; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g10060 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g10060
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr9:8526732..8527776
RNA-Seq ExpressionMoc09g10060
SyntenyMoc09g10060
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI39106.1 hypothetical protein CRG98_040530 [Punica granatum]1.0e-3339.39Show/hide
Query:  VQRTADGFD--ETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWEL
        +Q  A GF+   T + +    RK+ W+W  +RW  P   + K+NTDG+++GNPG+AGA G+    DG  + G+ HN+G   + IA+LWG L GLELAW+ 
Subjt:  VQRTADGFD--ETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWEL

Query:  GCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL
        G R + +ELDS++V +++ NQ    + L P +  I  +L ++W V V H Y+ESN CADW+A  A +  +G +     P  +  LL  +  GA++ RL
Subjt:  GCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL

PKI42247.1 hypothetical protein CRG98_037363 [Punica granatum]5.2e-4139.02Show/hide
Query:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE
        P D    +   A  F E W  ++Q++     +W  I W  P  ++ KLNTDG  +G+ G+ GA GI R+S G  + G+  +LG +   +AELWG+L+GLE
Subjt:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE

Query:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM
        LAW   CR+L +E+DS +V  +V  Q   +   +P  R I  LL ++W+V + H Y E N CADWL+  A +LP+G +V +  P ++L LL+ DI+GA +
Subjt:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM

Query:  PRLIT
         R ++
Subjt:  PRLIT

PKI65311.1 hypothetical protein CRG98_014275 [Punica granatum]4.7e-3442.94Show/hide
Query:  RKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ
        RK + +W  + W  PS  + KLNTDG++KGNP  AGA G+ R  DG  + G+   +G   A +AELWG+LSGLELAWELG R + +E+DS +V +++   
Subjt:  RKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ

Query:  KHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL
              LR  +R I   L+++W V V H YRE N  ADW+A  + +L +GLH+ + P  ++  LL  DI    +PRL
Subjt:  KHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL

XP_031376896.1 uncharacterized protein LOC116192475 [Punica granatum]5.3e-3838.92Show/hide
Query:  PKDPTSIVQRTADGFDETWKFAAQLLR-KQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGL
        P+D    ++ TA  F+      +   + ++ W+W  I+W  P   + K+NTDG+++GNPGIAGA G+ R+ DG+ + G+ HN+G   + IAELWG L GL
Subjt:  PKDPTSIVQRTADGFDETWKFAAQLLR-KQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGL

Query:  ELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGAT
        +LAW+ G R + +ELDS++V +++ +       L P +  I+ +L ++W + V H YRE N CADW+A  A +  +G H    PP  L  LL  D++GA+
Subjt:  ELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGAT

Query:  MPR
        +PR
Subjt:  MPR

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]1.0e-4143.35Show/hide
Query:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE
        P+D    + R A+ F   W+    ++R+ + +W  + WN PS  + KLNTDG++KGNPG AGA G+ R  DG     +  N+G   AV+AELWG+LSGLE
Subjt:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE

Query:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM
        LAWELG R + +E+DS +V +++         LR  +R+I   L+++W V V H YRE N  ADW+A  + +LP+GLH+ + PP ++  LL  DI GA +
Subjt:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM

Query:  PRL
        PRL
Subjt:  PRL

TrEMBL top hitse value%identityAlignment
A0A2I0I6R1 RNase H domain-containing protein5.0e-3439.39Show/hide
Query:  VQRTADGFD--ETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWEL
        +Q  A GF+   T + +    RK+ W+W  +RW  P   + K+NTDG+++GNPG+AGA G+    DG  + G+ HN+G   + IA+LWG L GLELAW+ 
Subjt:  VQRTADGFD--ETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWEL

Query:  GCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL
        G R + +ELDS++V +++ NQ    + L P +  I  +L ++W V V H Y+ESN CADW+A  A +  +G +     P  +  LL  +  GA++ RL
Subjt:  GCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL

A0A2I0IE25 RNase H domain-containing protein2.5e-4139.02Show/hide
Query:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE
        P D    +   A  F E W  ++Q++     +W  I W  P  ++ KLNTDG  +G+ G+ GA GI R+S G  + G+  +LG +   +AELWG+L+GLE
Subjt:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE

Query:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM
        LAW   CR+L +E+DS +V  +V  Q   +   +P  R I  LL ++W+V + H Y E N CADWL+  A +LP+G +V +  P ++L LL+ DI+GA +
Subjt:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM

Query:  PRLIT
         R ++
Subjt:  PRLIT

A0A2I0K9U3 RNase H domain-containing protein2.3e-3442.94Show/hide
Query:  RKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ
        RK + +W  + W  PS  + KLNTDG++KGNP  AGA G+ R  DG  + G+   +G   A +AELWG+LSGLELAWELG R + +E+DS +V +++   
Subjt:  RKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ

Query:  KHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL
              LR  +R I   L+++W V V H YRE N  ADW+A  + +L +GLH+ + P  ++  LL  DI    +PRL
Subjt:  KHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRL

A0A6P8C599 uncharacterized protein LOC1161924752.6e-3838.92Show/hide
Query:  PKDPTSIVQRTADGFDETWKFAAQLLR-KQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGL
        P+D    ++ TA  F+      +   + ++ W+W  I+W  P   + K+NTDG+++GNPGIAGA G+ R+ DG+ + G+ HN+G   + IAELWG L GL
Subjt:  PKDPTSIVQRTADGFDETWKFAAQLLR-KQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGL

Query:  ELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGAT
        +LAW+ G R + +ELDS++V +++ +       L P +  I+ +L ++W + V H YRE N CADW+A  A +  +G H    PP  L  LL  D++GA+
Subjt:  ELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGAT

Query:  MPR
        +PR
Subjt:  MPR

A0A6P8E5K3 uncharacterized protein LOC1162123245.0e-4243.35Show/hide
Query:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE
        P+D    + R A+ F   W+    ++R+ + +W  + WN PS  + KLNTDG++KGNPG AGA G+ R  DG     +  N+G   AV+AELWG+LSGLE
Subjt:  PKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLE

Query:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM
        LAWELG R + +E+DS +V +++         LR  +R+I   L+++W V V H YRE N  ADW+A  + +LP+GLH+ + PP ++  LL  DI GA +
Subjt:  LAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATM

Query:  PRL
        PRL
Subjt:  PRL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657508.9e-2838.37Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL
        I W  P   + K+NTDG+++GNPG+A A G+ RD  G    G+  N+G+ +A  AELWG+  GL  AWE    ++ +E+DSE++    K   +  HP + 
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL

Query:  LRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRLI
        L   +R     L ++W V + H+YRE+N  AD LAN A++L +G H  +  P  +  LL  D  G+T PR +
Subjt:  LRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRLI

Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-1636.44Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL
        I W  P   + K+NTDG+++GNPG+A A G+ RD +G    G+  N+G+ +A  AELWG+  GL  AWE    ++ +E+DSE +    K   +  HP + 
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL

Query:  LRPFLRKITQLLDQEWDV
        L   +R     L ++W +
Subjt:  LRPFLRKITQLLDQEWDV

AT5G51080.1 RNase H family protein4.8e-1334.65Show/hide
Query:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD
        DG++KGNPG++GA  + +  DG+ +   +  LG      AE  GL+ GL+ A E G  K+ V+ DS++VC  +  Q K    +L    ++  QL D+   
Subjt:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD

Query:  VSVHHIYRESNFCADWLANNAWNLPIG
          + H+ R  N  AD  AN A  L  G
Subjt:  VSVHHIYRESNFCADWLANNAWNLPIG

AT5G51080.2 RNase H family protein4.8e-1334.65Show/hide
Query:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD
        DG++KGNPG++GA  + +  DG+ +   +  LG      AE  GL+ GL+ A E G  K+ V+ DS++VC  +  Q K    +L    ++  QL D+   
Subjt:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD

Query:  VSVHHIYRESNFCADWLANNAWNLPIG
          + H+ R  N  AD  AN A  L  G
Subjt:  VSVHHIYRESNFCADWLANNAWNLPIG

AT5G51080.3 RNase H family protein4.8e-1334.65Show/hide
Query:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD
        DG++KGNPG++GA  + +  DG+ +   +  LG      AE  GL+ GL+ A E G  K+ V+ DS++VC  +  Q K    +L    ++  QL D+   
Subjt:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD

Query:  VSVHHIYRESNFCADWLANNAWNLPIG
          + H+ R  N  AD  AN A  L  G
Subjt:  VSVHHIYRESNFCADWLANNAWNLPIG

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-1528.66Show/hide
Query:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL
        W PP     KLN  G++     +  + GI RD  G  V GY         V+A L  +  GL+  W+ G R++H+E  S  +   +  +       +  L
Subjt:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL

Query:  RKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMAD
             ++ +EW+  ++HI +E N CA+WLA  +   P  L     PP  L+  L  D
Subjt:  RKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCAAAGGATCCAACTAGTATTGTTCAAAGAACAGCGGATGGTTTTGATGAAACATGGAAGTTCGCTGCGCAACTACTAAGAAAGCAGATCTGGCAATGGGCAGA
TATTAGATGGAACCCTCCTTCGTTTAACTACTGGAAGTTAAACACTGATGGTTCTGCTAAAGGTAATCCAGGGATAGCGGGTGCTGAGGGCATTTTTCGAGATTCTGATG
GTAATAGGGTCAAAGGTTACCAACATAACCTTGGCCAAACAGCGGCAGTTATAGCAGAGCTTTGGGGGTTACTATCAGGCCTAGAATTAGCCTGGGAGCTGGGCTGTCGA
AAGCTACACGTTGAATTAGACTCTGAAATTGTTTGCAAAATGGTTCATAATCAAAAGCATCCAACTGCTTTGCTAAGGCCTTTTTTAAGGAAGATCACCCAACTGCTAGA
TCAGGAGTGGGACGTTTCTGTTCATCACATATATAGGGAATCCAATTTTTGTGCAGATTGGTTAGCTAATAATGCTTGGAATCTCCCCATAGGTCTTCACGTGTGTAATG
AGCCCCCAACCAAGCTTCTCCATCTGTTGATGGCTGACATCTCAGGGGCCACCATGCCCCGCCTCATCACCTCTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCAAAGGATCCAACTAGTATTGTTCAAAGAACAGCGGATGGTTTTGATGAAACATGGAAGTTCGCTGCGCAACTACTAAGAAAGCAGATCTGGCAATGGGCAGA
TATTAGATGGAACCCTCCTTCGTTTAACTACTGGAAGTTAAACACTGATGGTTCTGCTAAAGGTAATCCAGGGATAGCGGGTGCTGAGGGCATTTTTCGAGATTCTGATG
GTAATAGGGTCAAAGGTTACCAACATAACCTTGGCCAAACAGCGGCAGTTATAGCAGAGCTTTGGGGGTTACTATCAGGCCTAGAATTAGCCTGGGAGCTGGGCTGTCGA
AAGCTACACGTTGAATTAGACTCTGAAATTGTTTGCAAAATGGTTCATAATCAAAAGCATCCAACTGCTTTGCTAAGGCCTTTTTTAAGGAAGATCACCCAACTGCTAGA
TCAGGAGTGGGACGTTTCTGTTCATCACATATATAGGGAATCCAATTTTTGTGCAGATTGGTTAGCTAATAATGCTTGGAATCTCCCCATAGGTCTTCACGTGTGTAATG
AGCCCCCAACCAAGCTTCTCCATCTGTTGATGGCTGACATCTCAGGGGCCACCATGCCCCGCCTCATCACCTCTTTTTAG
Protein sequenceShow/hide protein sequence
MLPKDPTSIVQRTADGFDETWKFAAQLLRKQIWQWADIRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTAAVIAELWGLLSGLELAWELGCR
KLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQEWDVSVHHIYRESNFCADWLANNAWNLPIGLHVCNEPPTKLLHLLMADISGATMPRLITSF