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Moc09g10310 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g10310
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:8719000..8720931
RNA-Seq ExpressionMoc09g10310
SyntenyMoc09g10310
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.3e-1026.11Show/hide
Query:  DRKSWGISDYWDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQQAE-KSEDNSLHNIRR------------------
        DR +W   +YW+ ++D A  E+ +  MI +  IW  RN  +FK     ++ +   + +++   + Q    K +    H IRR                  
Subjt:  DRKSWGISDYWDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQQAE-KSEDNSLHNIRR------------------

Query:  ----------SDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNR
                  ++T G+GW+LRD +GEVI  G +++    +I  +E  ++  GL+ A+  +   PI +E D+ E ++LL+R
Subjt:  ----------SDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.7e-2135.75Show/hide
Query:  IIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQ------QAEKSEDNSLH-------------NIRRSDTS---GLGWVL
        ++D AS EDL   +I S VIW  RN V+F+ E  +   M++Q+ KF+ E S Q         K+ +N L              +   SD++   G+GW++
Subjt:  IIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQ------QAEKSEDNSLH-------------NIRRSDTS---GLGWVL

Query:  RDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDILILK
        R W G+++L GN+ V+  +++K +EA ++L GL+   +     P+ +E D+AEV +LLNR+ EDLT+  WVV++IL L+
Subjt:  RDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDILILK

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]1.2e-1155.26Show/hide
Query:  MPSRNTSQVVIDHIQ-RELNIPYTKQLGRGRWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK
        +P       V  HI  R  ++ +  + GRGRWDE KVR +FI SEAD ILQ PLPS   DDEIIWG DK GIFSV+
Subjt:  MPSRNTSQVVIDHIQ-RELNIPYTKQLGRGRWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK

XP_024033483.1 uncharacterized protein LOC112095606 [Citrus clementina]3.6e-1323.84Show/hide
Query:  RWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK------------------------------------------RIMRNLRSSSSG
        +WDE ++  +F   +AD+I++IPLP    +D IIW  DKKG++SVK                                          R  +N+  S+  
Subjt:  RWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK------------------------------------------RIMRNLRSSSSG

Query:  ----------NCDRKSWGISDYWDLIID-NASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYS-VQQAEKSEDNSLH---------
                   C  +  G+ + +  +++  A+ +  K  ++ + ++  + N ++FK +  N + +V + +  M  Y  +Q+ E++   S           
Subjt:  ----------NCDRKSWGISDYWDLIID-NASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYS-VQQAEKSEDNSLH---------

Query:  --------NIRRSDTS-----GLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVK
                N+  + +S     GLG ++RD RG VI    K+      +   EAE++  GLQ A +   T  + VE DA  VVNL+N +    +EI W++ 
Subjt:  --------NIRRSDTS-----GLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVK

Query:  DI
        +I
Subjt:  DI

XP_024042628.1 uncharacterized protein LOC112099434 [Citrus clementina]1.5e-1124.56Show/hide
Query:  RWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK---RIMRNLR-----SSSSGN---------------CDRKSWGISDY-------
        RW E  +   F+  +AD I+ IPLP + S D++IW  D+KG +SVK   +I   ++     SSS  N                 RK+W  + +       
Subjt:  RWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK---RIMRNLR-----SSSSGN---------------CDRKSWGISDY-------

Query:  --------WDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYS-------VQQAEKSEDNSLH-----------NI-----
                +  ++   S  D +   +    IW +RN ++F+ + P  +  V   +  +  Y        +  A+K +  +             N+     
Subjt:  --------WDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYS-------VQQAEKSEDNSLH-----------NI-----

Query:  RRSDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVK
        +  + SGLG V+RD  G +I    K      ++   EAE+V  GLQ A+    T  I +E D+  V +L+N       EI W+++
Subjt:  RRSDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVK

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.1e-1027.32Show/hide
Query:  IDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFM---AEYSVQQAEKSEDNSLHNIRR----------------------------SD
        +D A  E+ +  MI +  IW  RN  +FK   P ++ +   + +++   A  +     KS +  LH IRR                            ++
Subjt:  IDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFM---AEYSVQQAEKSEDNSLHNIRR----------------------------SD

Query:  TSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDI
        T G+GW+LRD +GEVI    +++    +I  +E  ++  GL+ A+  +   PI +E D+ E ++LL+R+ +D TEI W++++I
Subjt:  TSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDI

A0A6J1CQG0 uncharacterized protein LOC1110132161.8e-1025.65Show/hide
Query:  RKSWGISDYWDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAE-----YSVQQAEKSEDN-----------SLHNIRRS---
        R  W   D W+ +++  S E++   M+ +  IW SRN  +F+ E  + + + R +  F+         + Q  +S+ N           ++  +R S   
Subjt:  RKSWGISDYWDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAE-----YSVQQAEKSEDN-----------SLHNIRRS---

Query:  ----------------DTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLT
                        +  G+GW+L D RGE++L GN  +     I  +E  +++ GLQ  ++     PI +E D+ EV+ L+ +ED DLT
Subjt:  ----------------DTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLT

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X16.2e-1126.11Show/hide
Query:  DRKSWGISDYWDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQQAE-KSEDNSLHNIRR------------------
        DR +W   +YW+ ++D A  E+ +  MI +  IW  RN  +FK     ++ +   + +++   + Q    K +    H IRR                  
Subjt:  DRKSWGISDYWDLIIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQQAE-KSEDNSLHNIRR------------------

Query:  ----------SDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNR
                  ++T G+GW+LRD +GEVI  G +++    +I  +E  ++  GL+ A+  +   PI +E D+ E ++LL+R
Subjt:  ----------SDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNR

A0A6J1DNV9 uncharacterized protein LOC1110224032.3e-2135.75Show/hide
Query:  IIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQ------QAEKSEDNSLH-------------NIRRSDTS---GLGWVL
        ++D AS EDL   +I S VIW  RN V+F+ E  +   M++Q+ KF+ E S Q         K+ +N L              +   SD++   G+GW++
Subjt:  IIDNASSEDLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQ------QAEKSEDNSLH-------------NIRRSDTS---GLGWVL

Query:  RDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDILILK
        R W G+++L GN+ V+  +++K +EA ++L GL+   +     P+ +E D+AEV +LLNR+ EDLT+  WVV++IL L+
Subjt:  RDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDILILK

A0A6J1DRA0 uncharacterized protein LOC1110224235.6e-1255.26Show/hide
Query:  MPSRNTSQVVIDHIQ-RELNIPYTKQLGRGRWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK
        +P       V  HI  R  ++ +  + GRGRWDE KVR +FI SEAD ILQ PLPS   DDEIIWG DK GIFSV+
Subjt:  MPSRNTSQVVIDHIQ-RELNIPYTKQLGRGRWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein9.5e-0421.47Show/hide
Query:  YWDLIIDNASSEDLKAFMICSKV---IWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQ-------------------------QAEKSEDNSLHNIRR
        YW   + N + +  KA  +   +   +W +RN +VF+    N++ ++R+ +  + E+ ++                         Q  K   ++  N R 
Subjt:  YWDLIIDNASSEDLKAFMICSKV---IWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQ-------------------------QAEKSEDNSLHNIRR

Query:  SDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDILILKAQ
        ++  G+GWVLR+ +GEV   G + +    S+ + E E++   +         Y I  E D+  ++ +LN  DE    ++  ++D+  L +Q
Subjt:  SDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCDPTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDILILKAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAGCAGGAACACAAGCCAGGTCGTGATTGATCATATCCAACGCGAACTGAATATTCCTTATACCAAGCAGTTGGGTCGAGGAAGGTGGGATGAGGAGAAGGTCCG
AACCAACTTTATCGCTTCAGAGGCCGATCAAATTCTTCAGATTCCTTTGCCAAGTGATGGTTCGGATGACGAGATTATATGGGGAGCGGATAAGAAAGGGATCTTTTCAG
TAAAAAGAATCATGAGGAATCTGCGGTCCTCCTCTTCTGGGAATTGTGACAGGAAATCGTGGGGGATTAGCGACTATTGGGATTTGATTATTGATAATGCGAGTTCGGAG
GATCTGAAGGCATTTATGATTTGTTCGAAGGTGATTTGGATTTCAAGGAACAATGTGGTTTTCAAGAAGGAGCCGCCTAATTCTAAAGGGATGGTTCGACAAGTGAAGAA
ATTTATGGCAGAATATTCTGTTCAACAAGCAGAAAAGTCCGAAGATAATAGTTTGCATAATATCAGAAGGTCAGATACTAGCGGATTAGGATGGGTTTTGCGAGATTGGA
GGGGAGAAGTCATCCTCGGCGGCAACAAAGTGGTGGATAATTTCAGTAGCATAAAGAAGATGGAGGCAGAATCAGTCCTCAACGGTCTTCAATGTGCGCTTTCGTGTGAC
CCAACCTACCCGATTAGAGTGGAAATGGACGCAGCAGAGGTGGTGAATCTCTTGAATAGGGAAGATGAAGATCTCACCGAAATACGGTGGGTTGTGAAGGACATTCTGAT
TTTGAAAGCCCAAATCTATAATTTGGTCGAGTTGTATCCCGACTTGGTTGACTTGTTGGCCAAGGAGGCTTTTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAGCAGGAACACAAGCCAGGTCGTGATTGATCATATCCAACGCGAACTGAATATTCCTTATACCAAGCAGTTGGGTCGAGGAAGGTGGGATGAGGAGAAGGTCCG
AACCAACTTTATCGCTTCAGAGGCCGATCAAATTCTTCAGATTCCTTTGCCAAGTGATGGTTCGGATGACGAGATTATATGGGGAGCGGATAAGAAAGGGATCTTTTCAG
TAAAAAGAATCATGAGGAATCTGCGGTCCTCCTCTTCTGGGAATTGTGACAGGAAATCGTGGGGGATTAGCGACTATTGGGATTTGATTATTGATAATGCGAGTTCGGAG
GATCTGAAGGCATTTATGATTTGTTCGAAGGTGATTTGGATTTCAAGGAACAATGTGGTTTTCAAGAAGGAGCCGCCTAATTCTAAAGGGATGGTTCGACAAGTGAAGAA
ATTTATGGCAGAATATTCTGTTCAACAAGCAGAAAAGTCCGAAGATAATAGTTTGCATAATATCAGAAGGTCAGATACTAGCGGATTAGGATGGGTTTTGCGAGATTGGA
GGGGAGAAGTCATCCTCGGCGGCAACAAAGTGGTGGATAATTTCAGTAGCATAAAGAAGATGGAGGCAGAATCAGTCCTCAACGGTCTTCAATGTGCGCTTTCGTGTGAC
CCAACCTACCCGATTAGAGTGGAAATGGACGCAGCAGAGGTGGTGAATCTCTTGAATAGGGAAGATGAAGATCTCACCGAAATACGGTGGGTTGTGAAGGACATTCTGAT
TTTGAAAGCCCAAATCTATAATTTGGTCGAGTTGTATCCCGACTTGGTTGACTTGTTGGCCAAGGAGGCTTTTCGTTAA
Protein sequenceShow/hide protein sequence
MPSRNTSQVVIDHIQRELNIPYTKQLGRGRWDEEKVRTNFIASEADQILQIPLPSDGSDDEIIWGADKKGIFSVKRIMRNLRSSSSGNCDRKSWGISDYWDLIIDNASSE
DLKAFMICSKVIWISRNNVVFKKEPPNSKGMVRQVKKFMAEYSVQQAEKSEDNSLHNIRRSDTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAESVLNGLQCALSCD
PTYPIRVEMDAAEVVNLLNREDEDLTEIRWVVKDILILKAQIYNLVELYPDLVDLLAKEAFR