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Moc09g10320 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g10320
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr9:8721276..8724631
RNA-Seq ExpressionMoc09g10320
SyntenyMoc09g10320
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]5.0e-1448.42Show/hide
Query:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE
        W PP   ++K+N+DAACR  ST  G IIRD    L+ A S+ L  PL+PL AEIR ILE LK  A+ ++T L VESD   AI+L++ ++ + G+E
Subjt:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.0e-7591.25Show/hide
Query:  MSNYSPRTRPNHGPVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAI
        MSNYSPRT+ NH PV+QYWRP  SVSLKLNTDAACRGASTSFGCIIRDSS SLVAATSI + FPLSPLLAEIRCILEGLKF AASNFTHLEVESDSLLAI
Subjt:  MSNYSPRTRPNHGPVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAI

Query:  QLIRNEIHTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAKWGITSPSATYAW
        QLIRNEIHTRGDEQNWVMEIQALT CF+FISFSHSSRQCNRAA GLAKWGITSPSATYAW
Subjt:  QLIRNEIHTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAKWGITSPSATYAW

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]4.4e-1034.07Show/hide
Query:  PVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE
        P +  WRPPL   +K+NTDAA     +  G ++R+ +  +V A  +      +PLLA+I  I EGL          + VE+DSL A+ LI ++   +G+ 
Subjt:  PVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE

Query:  QNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAK
         +WV +I+A    F  I F H  R+ N  A  L +
Subjt:  QNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAK

XP_038690886.1 uncharacterized protein LOC119989439 [Tripterygium wilfordii]1.3e-0932.59Show/hide
Query:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVM
        WRPP    +K+N DAA R +    G I RD+  + +A+ SIC+  PL+PL AE     E L F  + N   + +E DSLL I+ +        +    + 
Subjt:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVM

Query:  EIQALTYCFSFISFSHSSRQCNRAARGLAKWGITS
          + +   F  + FSH  R  N  A  LAK+ +++
Subjt:  EIQALTYCFSFISFSHSSRQCNRAARGLAKWGITS

XP_038722072.1 uncharacterized protein LOC120014227 [Tripterygium wilfordii]8.9e-1134.78Show/hide
Query:  MSNYSPRTRPN-HG------PVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVE
        +++Y     PN HG      P I+ WRPP +  +K+N DAA R +    G I RD+  + +A+ +IC+  PL+PL AE     E L F  + N+  + +E
Subjt:  MSNYSPRTRPN-HG------PVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVE

Query:  SDSLLAIQ-LIRNEIHTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAKWGITS
         DSLL I+ L RNE+    +    V   + L      +SFSH  R  N  A  LAK+ +++
Subjt:  SDSLLAIQ-LIRNEIHTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAKWGITS

TrEMBL top hitse value%identityAlignment
A0A2I4E8M5 uncharacterized protein LOC1089873112.4e-0935.61Show/hide
Query:  WRPPLSVSLKLNTDAACRG--ASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNW
        W PP + +LKLNTD A     +S+  G I+RDS   ++ +TS        P+  E+  IL GL+       + L VESDSLL++Q I+N       + N 
Subjt:  WRPPLSVSLKLNTDAACRG--ASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNW

Query:  VMEIQALTYCFSFISFSHSSRQCNRAARGLAK
        +  I+ L      +S  H+++  NR A GLAK
Subjt:  VMEIQALTYCFSFISFSHSSRQCNRAARGLAK

A0A2I4EFW5 uncharacterized protein LOC1089892096.8e-0934.93Show/hide
Query:  NHGPVIQY-WRPPLSVSLKLNTDAA--CRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEI
        + GP   Y W  P    LKLN D A      S+  G ++R+S   ++ +TS   +    P+  E+  IL GL+F      +HL +ESDSLL +  ++++ 
Subjt:  NHGPVIQY-WRPPLSVSLKLNTDAA--CRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEI

Query:  HTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAK--WGI
         +R  + N V +I+ L   F   S  H+SR  N AA GLAK  W I
Subjt:  HTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAK--WGI

A0A6J1BQ49 uncharacterized protein LOC1110047862.4e-1448.42Show/hide
Query:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE
        W PP   ++K+N+DAACR  ST  G IIRD    L+ A S+ L  PL+PL AEIR ILE LK  A+ ++T L VESD   AI+L++ ++ + G+E
Subjt:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-7591.25Show/hide
Query:  MSNYSPRTRPNHGPVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAI
        MSNYSPRT+ NH PV+QYWRP  SVSLKLNTDAACRGASTSFGCIIRDSS SLVAATSI + FPLSPLLAEIRCILEGLKF AASNFTHLEVESDSLLAI
Subjt:  MSNYSPRTRPNHGPVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAI

Query:  QLIRNEIHTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAKWGITSPSATYAW
        QLIRNEIHTRGDEQNWVMEIQALT CF+FISFSHSSRQCNRAA GLAKWGITSPSATYAW
Subjt:  QLIRNEIHTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAKWGITSPSATYAW

A0A6J1DZK3 uncharacterized protein LOC1110249682.1e-1034.07Show/hide
Query:  PVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE
        P +  WRPPL   +K+NTDAA     +  G ++R+ +  +V A  +      +PLLA+I  I EGL          + VE+DSL A+ LI ++   +G+ 
Subjt:  PVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRNEIHTRGDE

Query:  QNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAK
         +WV +I+A    F  I F H  R+ N  A  L +
Subjt:  QNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACTATTCACCTCGAACTCGACCGAATCATGGGCCAGTCATTCAATATTGGCGCCCCCCATTGAGTGTCTCTCTAAAATTAAACACTGATGCGGCATGT
AGGGGTGCATCCACGAGCTTCGGCTGCATCATAAGAGACTCTTCTGATTCTCTGGTTGCCGCGACTTCAATTTGTCTTTCATTTCCGTTGTCGCCTCTTCTTGCA
GAAATCAGATGCATCTTGGAGGGTCTGAAGTTTGTGGCGGCTTCCAATTTCACCCATTTAGAAGTTGAATCTGATTCTTTGTTGGCAATTCAGCTGATTCGAAAT
GAGATACACACAAGGGGAGATGAGCAAAATTGGGTGATGGAGATTCAAGCCCTAACTTACTGCTTTTCCTTCATTTCCTTTTCCCATTCGTCCCGTCAATGCAAT
CGTGCTGCCCGTGGTTTAGCAAAATGGGGGATCACTTCCCCTTCTGCCACATATGCTTGGGCCGAGACCAAGTTGACTCGGACTGGGCTTGCACGGGGGTCGGGA
ATCACTGGAGAGGTTCTCGGCCACTGGGTCGAGCTGGTTGCAATCAAGTCTCTTAGTACCTCGGGATTCTCTTCCCCTGTTTCACTGACTGGCTTGCTTATCGAC
CTGCTCCTAGGTCTGTTCCAGTTTGAGTTCCTTGATCAGCTATTGACTTACTTACCCATGCCCCCACTTGAGGCACTCATGTACTTCTGGGTTCGGCTTAAAGCC
TCCGAGAAAGTGCCTGGAGTTGTCTTCCCAAAAGAGAATACTAATCGCTCATCTTTCACACCGGATACAAAGGCTATTGTGCCACTGCATCTGTACGTTACTGGT
TTCCTTCTAACCCGCCCTCCAACGAATTGGGTGACAAATGCCCTCGCCAATTCCTTGAAGCTTGAGATCGACTTTCTTTTCAACTGTTGGAACCACTTGTGTGTC
GAGCCAGTCAAAGTGAAAGAAAGCACTATGCATCTGATGGCTTCTGTTATGCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAACTATTCACCTCGAACTCGACCGAATCATGGGCCAGTCATTCAATATTGGCGCCCCCCATTGAGTGTCTCTCTAAAATTAAACACTGATGCGGCATGT
AGGGGTGCATCCACGAGCTTCGGCTGCATCATAAGAGACTCTTCTGATTCTCTGGTTGCCGCGACTTCAATTTGTCTTTCATTTCCGTTGTCGCCTCTTCTTGCA
GAAATCAGATGCATCTTGGAGGGTCTGAAGTTTGTGGCGGCTTCCAATTTCACCCATTTAGAAGTTGAATCTGATTCTTTGTTGGCAATTCAGCTGATTCGAAAT
GAGATACACACAAGGGGAGATGAGCAAAATTGGGTGATGGAGATTCAAGCCCTAACTTACTGCTTTTCCTTCATTTCCTTTTCCCATTCGTCCCGTCAATGCAAT
CGTGCTGCCCGTGGTTTAGCAAAATGGGGGATCACTTCCCCTTCTGCCACATATGCTTGGGCCGAGACCAAGTTGACTCGGACTGGGCTTGCACGGGGGTCGGGA
ATCACTGGAGAGGTTCTCGGCCACTGGGTCGAGCTGGTTGCAATCAAGTCTCTTAGTACCTCGGGATTCTCTTCCCCTGTTTCACTGACTGGCTTGCTTATCGAC
CTGCTCCTAGGTCTGTTCCAGTTTGAGTTCCTTGATCAGCTATTGACTTACTTACCCATGCCCCCACTTGAGGCACTCATGTACTTCTGGGTTCGGCTTAAAGCC
TCCGAGAAAGTGCCTGGAGTTGTCTTCCCAAAAGAGAATACTAATCGCTCATCTTTCACACCGGATACAAAGGCTATTGTGCCACTGCATCTGTACGTTACTGGT
TTCCTTCTAACCCGCCCTCCAACGAATTGGGTGACAAATGCCCTCGCCAATTCCTTGAAGCTTGAGATCGACTTTCTTTTCAACTGTTGGAACCACTTGTGTGTC
GAGCCAGTCAAAGTGAAAGAAAGCACTATGCATCTGATGGCTTCTGTTATGCCGTAG
Protein sequenceShow/hide protein sequence
MSNYSPRTRPNHGPVIQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICLSFPLSPLLAEIRCILEGLKFVAASNFTHLEVESDSLLAIQLIRN
EIHTRGDEQNWVMEIQALTYCFSFISFSHSSRQCNRAARGLAKWGITSPSATYAWAETKLTRTGLARGSGITGEVLGHWVELVAIKSLSTSGFSSPVSLTGLLID
LLLGLFQFEFLDQLLTYLPMPPLEALMYFWVRLKASEKVPGVVFPKENTNRSSFTPDTKAIVPLHLYVTGFLLTRPPTNWVTNALANSLKLEIDFLFNCWNHLCV
EPVKVKESTMHLMASVMP