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Moc09g10540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g10540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description40S ribosomal protein S28
Genome locationchr9:8948540..8949611
RNA-Seq ExpressionMoc09g10540
SyntenyMoc09g10540
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2289562.1 hypothetical protein GH714_037161 [Hevea brasiliensis]3.3e-2695.45Show/hide
Query:  WMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        WM+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  WMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG5086834.1 hypothetical protein JHK82_054231 [Glycine max]4.3e-2695.45Show/hide
Query:  WMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        WMESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  WMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG6595421.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]5.7e-2694.44Show/hide
Query:  LLLEGPWMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        LLL G  MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  LLLEGPWMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-2690.79Show/hide
Query:  PKLLLEGPW--MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        P L L   W  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  PKLLLEGPW--MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]1.9e-2663.36Show/hide
Query:  CLQKTLSPLR-LALTISSHLSARRSAVSVSRLRLEENFEIPVLKNEKLDQRVPSQHNPKLLLEGPWMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ
        CL+  L+P R L LT  S LSARR  +S   +R                        P  L+    MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ
Subjt:  CLQKTLSPLR-LALTISSHLSARRSAVSVSRLRLEENFEIPVLKNEKLDQRVPSQHNPKLLLEGPWMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ

Query:  NRYIMRNVKGPVREGDILTLLESEREARRLR
        NRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  NRYIMRNVKGPVREGDILTLLESEREARRLR

TrEMBL top hitse value%identityAlignment
A0A0A0LPR2 Uncharacterized protein4.7e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A1S3CD61 40S ribosomal protein S28-14.7e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6A6KKV3 Uncharacterized protein1.6e-2695.45Show/hide
Query:  WMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        WM+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  WMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1C0B5 40S ribosomal protein S28-1-like9.4e-2763.36Show/hide
Query:  CLQKTLSPLR-LALTISSHLSARRSAVSVSRLRLEENFEIPVLKNEKLDQRVPSQHNPKLLLEGPWMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ
        CL+  L+P R L LT  S LSARR  +S   +R                        P  L+    MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ
Subjt:  CLQKTLSPLR-LALTISSHLSARRSAVSVSRLRLEENFEIPVLKNEKLDQRVPSQHNPKLLLEGPWMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ

Query:  NRYIMRNVKGPVREGDILTLLESEREARRLR
        NRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  NRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1HTG7 40S ribosomal protein S28-14.7e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-27.2e-2489.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S281.1e-2490.77Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S281.4e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S281.4e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-11.9e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.3e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.3e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S285.1e-2589.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATCAGGTCGAACCGACCGGTTATATATATACACATAGGTTTAGGATTTGTTTACAGAAAACCCTGTCGCCTCTCAGACTCGCTCTCACGATCTCGTCTCACCT
CTCAGCCCGCCGTTCGGCCGTCAGTGTCTCTCGTCTTCGCCTTGAGGAAAATTTTGAGATCCCAGTTCTGAAAAATGAAAAATTGGATCAGCGTGTCCCATCCCAACACA
ACCCAAAGCTCTTATTAGAAGGGCCTTGGATGGAATCTCAGATTAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGGGGGCAGGTAACTCAAGTTAGA
GTCAAATTTCTTGATGATCAAAATCGTTACATCATGAGGAATGTGAAGGGACCAGTGAGGGAAGGCGATATTCTGACCCTGCTCGAGTCTGAGAGAGAAGCTAGGAGATT
GCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAATCAGGTCGAACCGACCGGTTATATATATACACATAGGTTTAGGATTTGTTTACAGAAAACCCTGTCGCCTCTCAGACTCGCTCTCACGATCTCGTCTCACCT
CTCAGCCCGCCGTTCGGCCGTCAGTGTCTCTCGTCTTCGCCTTGAGGAAAATTTTGAGATCCCAGTTCTGAAAAATGAAAAATTGGATCAGCGTGTCCCATCCCAACACA
ACCCAAAGCTCTTATTAGAAGGGCCTTGGATGGAATCTCAGATTAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGGGGGCAGGTAACTCAAGTTAGA
GTCAAATTTCTTGATGATCAAAATCGTTACATCATGAGGAATGTGAAGGGACCAGTGAGGGAAGGCGATATTCTGACCCTGCTCGAGTCTGAGAGAGAAGCTAGGAGATT
GCGTTGA
Protein sequenceShow/hide protein sequence
MKNQVEPTGYIYTHRFRICLQKTLSPLRLALTISSHLSARRSAVSVSRLRLEENFEIPVLKNEKLDQRVPSQHNPKLLLEGPWMESQIKHAVVVKVMGRTGSRGQVTQVR
VKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR