CuGenDBv2

Gene ID	Moc09g11210
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Genome location	chr9:9521036..9521722
RNA-Seq Expression	Moc09g11210
Synteny	Moc09g11210
Gene Ontology terms	GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

5.5e-113

91.23

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVH ETRDIQL IDRYIINSAGR+TNLKGKS NKDLHLIRRI DNTGA+WKPPTSNSWKLNT+AAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
        TGGIGWILRDEKGEVIKA CRIIR ERNITYLEVMAICEGLRAIR        QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMM+DM+IV
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV

Query:  SMRHISREANKVAHDLARRAMENDLREE
        SMRHISREANKVAH LARRAMENDLREE
Subjt:  SMRHISREANKVAHDLARRAMENDLREE

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]

1.5e-78

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIA QIWEMRNKSIFKGVHSETRDIQL IDRYIINSAG+DTNLK KS  KD H IRRIGDNT ARWKPPTSNSWKLNTDAAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR
        T GIGWILRDEKGEVIK  CRIIR ERNITYLEVMAICEGLRAIR        QEHCRPIHLESDSLEAIHLLHR
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]

1.5e-78

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIA QIWEMRNKSIFKGVHSETRDIQL IDRYIINSAG+DTNLK KS  KD H IRRIGDNT ARWKPPTSNSWKLNTDAAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR
        T GIGWILRDEKGEVIK  CRIIR ERNITYLEVMAICEGLRAIR        QEHCRPIHLESDSLEAIHLLHR
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]

1.3e-26

33.64

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        +DKA +E+    +I +W IW  RN  IF+G HS    +   + +++  S     + + +++   LH       N   +W+PP  + W LN DA+W   T+
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
         GGIGWI+R   G+++ A  R +    N+  LE  AI EGLR +             RP+H+E+DS E   LL+R+ +D T+  W++EEI  + +  +I+
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV

Query:  SMRHISREANKVAHDLARRA
        +   + RE N  AH LA+RA
Subjt:  SMRHISREANKVAHDLARRA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

1.0e-127

100

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
        TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV

Query:  SMRHISREANKVAHDLARRAMENDLREE
        SMRHISREANKVAHDLARRAMENDLREE
Subjt:  SMRHISREANKVAHDLARRAMENDLREE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

2.7e-113

91.23

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVH ETRDIQL IDRYIINSAGR+TNLKGKS NKDLHLIRRI DNTGA+WKPPTSNSWKLNT+AAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
        TGGIGWILRDEKGEVIKA CRIIR ERNITYLEVMAICEGLRAIR        QEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMM+DM+IV
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV

Query:  SMRHISREANKVAHDLARRAMENDLREE
        SMRHISREANKVAH LARRAMENDLREE
Subjt:  SMRHISREANKVAHDLARRAMENDLREE

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X1

7.3e-79

Show/hide

Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIA QIWEMRNKSIFKGVHSETRDIQL IDRYIINSAG+DTNLK KS  KD H IRRIGDNT ARWKPPTSNSWKLNTDAAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR
        T GIGWILRDEKGEVIK  CRIIR ERNITYLEVMAICEGLRAIR        QEHCRPIHLESDSLEAIHLLHR
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR

A0A6J1DNV9 uncharacterized protein LOC111022403

6.5e-27

33.64

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        +DKA +E+    +I +W IW  RN  IF+G HS    +   + +++  S     + + +++   LH       N   +W+PP  + W LN DA+W   T+
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
         GGIGWI+R   G+++ A  R +    N+  LE  AI EGLR +             RP+H+E+DS E   LL+R+ +D T+  W++EEI  + +  +I+
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV

Query:  SMRHISREANKVAHDLARRA
        +   + RE N  AH LA+RA
Subjt:  SMRHISREANKVAHDLARRA

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X2

7.3e-79

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Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIA QIWEMRNKSIFKGVHSETRDIQL IDRYIINSAG+DTNLK KS  KD H IRRIGDNT ARWKPPTSNSWKLNTDAAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR
        T GIGWILRDEKGEVIK  CRIIR ERNITYLEVMAICEGLRAIR        QEHCRPIHLESDSLEAIHLLHR
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR

A0A6J1DSV1 uncharacterized protein LOC111023608

5.0e-128

100

Show/hide

Query:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
        MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN
Subjt:  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTN

Query:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
        TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV
Subjt:  TGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIV

Query:  SMRHISREANKVAHDLARRAMENDLREE
        SMRHISREANKVAHDLARRAMENDLREE
Subjt:  SMRHISREANKVAHDLARRAMENDLREE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

9.0e-13

25.82

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Query:  IAWQIWEMRNKSIFKGVHSETRDI-QLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKG
        + W++W+ RN+ +FKG   +  ++ +  ++ +   S  R+  L+GK++        ++  N   +WK P     K NTDA W+ +    GIGWILR+E G
Subjt:  IAWQIWEMRNKSIFKGVHSETRDI-QLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKG

Query:  EVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW-----LLEEIWQMMEDMKIVSMRHISRE
         V+    R +   +N+   E+ A+   +          + + + + I  ESD+   ++LL+      ++  W      LE+I Q++   + V      R 
Subjt:  EVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW-----LLEEIWQMMEDMKIVSMRHISRE

Query:  ANKVAHDLARRAM
         NKVA  +AR ++
Subjt:  ANKVAHDLARRAM

AT4G29090.1 Ribonuclease H-like superfamily protein

2.9e-11

23.15

Show/hide

Query:  IAWQIWEMRNKSIFKGVHSETRDI----QLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRD
        + W++W+ RN+ +F+G     +++    +  ++ + I +       K            ++  ++  RW+PP     K NTDA W  D    GIGW+LR+
Subjt:  IAWQIWEMRNKSIFKGVHSETRDI----QLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRD

Query:  EKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW-----LLEEIWQMMEDMKIVSMRHI
        EKGEV     R +   +++   E+ A+   + ++ +      Q  +   +  ESDS   I +L+       + IW      ++++ +++     V    I
Subjt:  EKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW-----LLEEIWQMMEDMKIVSMRHI

Query:  SREANKVAHDLARRAM
         RE N +A  +AR ++
Subjt:  SREANKVAHDLARRAM

Sequences

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CDS sequence

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ATGGATAAGGCTGGTGAAGAAGAACGTAGAAGAAGCATGATAATAGCTTGGCAGATTTGGGAAATGCGGAACAAATCAATTTTCAAAGGTGTTCATTCAGAAACTAGAGA
TATTCAATTGGTGATTGACAGATACATAATCAACAGTGCAGGTCGAGACACAAATCTAAAAGGAAAGTCGGCAAACAAGGACTTGCACCTGATAAGGCGAATTGGAGATA
ATACAGGTGCCCGATGGAAACCTCCCACGTCAAATTCATGGAAGTTAAATACGGATGCAGCATGGCGAGCTGATACAAACACTGGCGGGATTGGCTGGATTTTAAGAGAC
GAGAAGGGAGAAGTCATCAAAGCAGACTGTAGAATTATAAGAACGGAAAGAAATATTACTTACCTAGAGGTGATGGCTATTTGCGAGGGATTGCGTGCGATTCGACAAGA
ACACTGTCGACCAATTCAACAAGAACACTGTCGACCAATTCACTTGGAATCTGACTCCCTCGAAGCCATTCATCTACTTCACAGACAGTGTCAAGATCAAACTGAAATTA
TTTGGCTTTTGGAAGAAATTTGGCAGATGATGGAAGATATGAAGATAGTTTCAATGAGACATATCAGTCGAGAGGCAAATAAGGTGGCCCATGACTTAGCCAGACGAGCG
ATGGAAAACGATTTGAGGGAAGAGTGA

mRNA sequence

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Protein sequence

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MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRD
EKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA
MENDLREE

Moc09g11210 (gene) of Bitter gourd (OHB3-1) v2 genome