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Moc09g11430 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g11430
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:9682604..9685654
RNA-Seq ExpressionMoc09g11430
SyntenyMoc09g11430
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]1.6e-1668.12Show/hide
Query:  GVNVIEGC-----SLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK
        G+NV+E       S+AEGS+ +LKPK LTIFY EKPDAPN SR  ITI VP PFEYK+SKAVPW+YECK
Subjt:  GVNVIEGC-----SLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]2.9e-1085.71Show/hide
Query:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
        +DM GLDTDIVVH LQINP +KPVRQKLRKM PDMLIKIKDE
Subjt:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]2.8e-0850.62Show/hide
Query:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPLEKDMTGLDTDIVVHSLQINPN-------YKPVR
        +EDILVS+LAS+ Y+E AE+AFESS QSFEIA+ATTL+G   RPKP L +     D + +   L++  N       YKP R
Subjt:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPLEKDMTGLDTDIVVHSLQINPN-------YKPVR

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]1.6e-1629.93Show/hide
Query:  VNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK-------------------------------------
        ++V+E  S AE S+ + KPKPLT+ Y EKP+ P++S   ITIQVP PFEY +SKAVPW+YECK                                     
Subjt:  VNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK-------------------------------------

Query:  ------------------------DK-------EDI---------------------------------------------LVSKLAS---ISYIEVAEK
                                DK       EDI                                             ++S L S   +  +E  EK
Subjt:  ------------------------DK-------EDI---------------------------------------------LVSKLAS---ISYIEVAEK

Query:  AFESSIQSFEIAHATT----------LYGHLKRPKPPLE-------------KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
              +S EI +  +              L+  K  +E             +DM  LDTDIVVH L INP  KPVRQKLRKM PDMLIK+KDE
Subjt:  AFESSIQSFEIAHATT----------LYGHLKRPKPPLE-------------KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]3.6e-1670.97Show/hide
Query:  NVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK
        NV+E   +AEGS+ S+KPK LTIFY EKPDAP+ SR  ITI VP PFEYK+SKAVPW+YECK
Subjt:  NVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]5.5e-0980.95Show/hide
Query:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
        +DM GLDTDIVVH L  NP +KPVRQKLRKM PDMLIKIKDE
Subjt:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]8.0e-0870.83Show/hide
Query:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPL
        +EDILVS+LAS+ Y+E AE+AFESS QSFEIA+ATTL+G   RPKP L
Subjt:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPL

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.2e-3351.48Show/hide
Query:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECKDK--EDILVSKLASISYIEVAEKAFESSIQSFEIAH
        G+NV+E  S+AEGS+ +LKPK LTIFY EKPDAP+ S+  ITI VP PFEYK+SKAVPW+Y+CK    +D+    L   +  EV +    S  ++ EI  
Subjt:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECKDK--EDILVSKLASISYIEVAEKAFESSIQSFEIAH

Query:  ATTLYGHLKRPKPPL-----------EKDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
         T +    ++    L            +DM GLDTDIVVH L INP +KPVRQKL KM PDMLIKIKDE
Subjt:  ATTLYGHLKRPKPPL-----------EKDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]4.2e-1768.75Show/hide
Query:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK
        G+N++E  S+AEGS+ +LKPK LTIFY EKP+APN SR  ITI VP PFEYK+SKAVPW+Y+CK
Subjt:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H7.8e-1768.12Show/hide
Query:  GVNVIEGC-----SLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK
        G+NV+E       S+AEGS+ +LKPK LTIFY EKPDAPN SR  ITI VP PFEYK+SKAVPW+YECK
Subjt:  GVNVIEGC-----SLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK

A0A6J1CNY7 Ribonuclease H1.4e-1085.71Show/hide
Query:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
        +DM GLDTDIVVH LQINP +KPVRQKLRKM PDMLIKIKDE
Subjt:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

A0A6J1CNY7 Ribonuclease H1.3e-0850.62Show/hide
Query:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPLEKDMTGLDTDIVVHSLQINPN-------YKPVR
        +EDILVS+LAS+ Y+E AE+AFESS QSFEIA+ATTL+G   RPKP L +     D + +   L++  N       YKP R
Subjt:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPLEKDMTGLDTDIVVHSLQINPN-------YKPVR

A0A6J1CNY7 Ribonuclease H7.8e-1729.93Show/hide
Query:  VNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK-------------------------------------
        ++V+E  S AE S+ + KPKPLT+ Y EKP+ P++S   ITIQVP PFEY +SKAVPW+YECK                                     
Subjt:  VNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK-------------------------------------

Query:  ------------------------DK-------EDI---------------------------------------------LVSKLAS---ISYIEVAEK
                                DK       EDI                                             ++S L S   +  +E  EK
Subjt:  ------------------------DK-------EDI---------------------------------------------LVSKLAS---ISYIEVAEK

Query:  AFESSIQSFEIAHATT----------LYGHLKRPKPPLE-------------KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
              +S EI +  +              L+  K  +E             +DM  LDTDIVVH L INP  KPVRQKLRKM PDMLIK+KDE
Subjt:  AFESSIQSFEIAHATT----------LYGHLKRPKPPLE-------------KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

A0A6J1D7C7 Ribonuclease H1.7e-1670.97Show/hide
Query:  NVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK
        NV+E   +AEGS+ S+KPK LTIFY EKPDAP+ SR  ITI VP PFEYK+SKAVPW+YECK
Subjt:  NVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK

A0A6J1D7C7 Ribonuclease H2.7e-0980.95Show/hide
Query:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
        +DM GLDTDIVVH L  NP +KPVRQKLRKM PDMLIKIKDE
Subjt:  KDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

A0A6J1D7C7 Ribonuclease H3.9e-0870.83Show/hide
Query:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPL
        +EDILVS+LAS+ Y+E AE+AFESS QSFEIA+ATTL+G   RPKP L
Subjt:  KEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPL

A0A6J1DZ90 Ribonuclease H1.6e-3351.48Show/hide
Query:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECKDK--EDILVSKLASISYIEVAEKAFESSIQSFEIAH
        G+NV+E  S+AEGS+ +LKPK LTIFY EKPDAP+ S+  ITI VP PFEYK+SKAVPW+Y+CK    +D+    L   +  EV +    S  ++ EI  
Subjt:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECKDK--EDILVSKLASISYIEVAEKAFESSIQSFEIAH

Query:  ATTLYGHLKRPKPPL-----------EKDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE
         T +    ++    L            +DM GLDTDIVVH L INP +KPVRQKL KM PDMLIKIKDE
Subjt:  ATTLYGHLKRPKPPL-----------EKDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDMLIKIKDE

A0A6J1E2J7 Ribonuclease H2.1e-1768.75Show/hide
Query:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK
        G+N++E  S+AEGS+ +LKPK LTIFY EKP+APN SR  ITI VP PFEYK+SKAVPW+Y+CK
Subjt:  GVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQVPTPFEYKNSKAVPWRYECK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTGAGCACGACCTGGATAACTAGTATTGCTAATGAGTCATCAACCATGAAGAAAGCAAGTTCTTCGAAGAAAAAGGAAGGTGAGGTGCAAATTGGAGAA
GACCGACTCTCTTGGAAGCACAATCATATGATAGGACGCAACGATATTCTTCATATTATTACCCAACGCCTTACGGGGGTAAATGTCATAGAAGGTTGCTCATTA
GCTGAAGGCTCAACTGTGTCTCTTAAGCCAAAACCTCTCACGATCTTTTATCATGAAAAGCCTGACGCACCCAACAGTAGCCGGAATTCAATTACTATTCAAGTC
CCGACTCCTTTTGAGTATAAAAATTCTAAAGCAGTTCCTTGGAGATACGAGTGCAAGGACAAAGAGGACATCCTAGTTTCAAAACTTGCTTCGATATCATATATT
GAAGTAGCAGAAAAAGCTTTTGAGTCTTCAATTCAATCATTTGAGATTGCACATGCCACAACTTTATATGGACATCTCAAAAGACCCAAACCACCTTTAGAGAAA
GATATGACTGGTTTAGATACAGATATTGTGGTCCACAGTTTGCAAATCAACCCAAATTACAAACCTGTGAGGCAGAAGTTACGGAAAATGATGCCTGATATGTTG
ATCAAGATAAAGGATGAATGTGCAAGTGTCAGCGACAAGCATATGTCGCCCATCGGGCCATGTCAAGGGCCGAGAGTGAAGTGTCGTGATGCGACCAAGGAGGAT
GGTGCATCACCTATCACACCATATGGATGTGCTCAAGAATGCCTAGAGAAGGCATATGCAGAATGCAAAGCGAAGGCGACGTCAGTGGTGTCGGTGACAAGCTCA
ATGAGGGCCAGTTGGGGCCCCGGGCCACGACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTGAGCACGACCTGGATAACTAGTATTGCTAATGAGTCATCAACCATGAAGAAAGCAAGTTCTTCGAAGAAAAAGGAAGGTGAGGTGCAAATTGGAGAA
GACCGACTCTCTTGGAAGCACAATCATATGATAGGACGCAACGATATTCTTCATATTATTACCCAACGCCTTACGGGGGTAAATGTCATAGAAGGTTGCTCATTA
GCTGAAGGCTCAACTGTGTCTCTTAAGCCAAAACCTCTCACGATCTTTTATCATGAAAAGCCTGACGCACCCAACAGTAGCCGGAATTCAATTACTATTCAAGTC
CCGACTCCTTTTGAGTATAAAAATTCTAAAGCAGTTCCTTGGAGATACGAGTGCAAGGACAAAGAGGACATCCTAGTTTCAAAACTTGCTTCGATATCATATATT
GAAGTAGCAGAAAAAGCTTTTGAGTCTTCAATTCAATCATTTGAGATTGCACATGCCACAACTTTATATGGACATCTCAAAAGACCCAAACCACCTTTAGAGAAA
GATATGACTGGTTTAGATACAGATATTGTGGTCCACAGTTTGCAAATCAACCCAAATTACAAACCTGTGAGGCAGAAGTTACGGAAAATGATGCCTGATATGTTG
ATCAAGATAAAGGATGAATGTGCAAGTGTCAGCGACAAGCATATGTCGCCCATCGGGCCATGTCAAGGGCCGAGAGTGAAGTGTCGTGATGCGACCAAGGAGGAT
GGTGCATCACCTATCACACCATATGGATGTGCTCAAGAATGCCTAGAGAAGGCATATGCAGAATGCAAAGCGAAGGCGACGTCAGTGGTGTCGGTGACAAGCTCA
ATGAGGGCCAGTTGGGGCCCCGGGCCACGACCCTAG
Protein sequenceShow/hide protein sequence
MGLSTTWITSIANESSTMKKASSSKKKEGEVQIGEDRLSWKHNHMIGRNDILHIITQRLTGVNVIEGCSLAEGSTVSLKPKPLTIFYHEKPDAPNSSRNSITIQV
PTPFEYKNSKAVPWRYECKDKEDILVSKLASISYIEVAEKAFESSIQSFEIAHATTLYGHLKRPKPPLEKDMTGLDTDIVVHSLQINPNYKPVRQKLRKMMPDML
IKIKDECASVSDKHMSPIGPCQGPRVKCRDATKEDGASPITPYGCAQECLEKAYAECKAKATSVVSVTSSMRASWGPGPRP