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Moc09g12010 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g12010
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionribonuclease MC-like
Genome locationchr9:10236590..10241678
RNA-Seq ExpressionMoc09g12010
SyntenyMoc09g12010
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR033130 - Ribonuclease T2, His active site 2
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAA10891.1 ribonuclease (RNase LC1) [Luffa aegyptiaca]1.2e-5177.87Show/hide
Query:  WPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCFD
        WPNVITG+NK+FW HEWNKHG+CS SKF+ +AYFQMAINMRNSIDL++AL+VGG+ PNG SK++QRVQSA+R   GKEPVLRCRGTG   RL+EIVMCFD
Subjt:  WPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCFD

Query:  DDGVTLINCNPVSSNCANSFIF
        DDGVTLINCNP +SNC NSFIF
Subjt:  DDGVTLINCNPVSSNCANSFIF

XP_004147499.1 ribonuclease MC [Cucumis sativus]8.2e-4566.94Show/hide
Query:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSNIRLIEIVMC
        VWPNV+TG+NKFFW HEWNKHG+CSESKF+   YFQ AINMR+ IDL++ L+ GG+ PNG SK+KQRV++A+ +HFGK+P+LRC + +   + L EIVMC
Subjt:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSNIRLIEIVMC

Query:  FDDDGVTLINCNPVSSNCANSFIF
        FDDDGVTLINCN   SNCA SFIF
Subjt:  FDDDGVTLINCNPVSSNCANSFIF

XP_022142280.1 ribonuclease MC-like [Momordica charantia]5.8e-5986.29Show/hide
Query:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC
        RVWPNVITG+N+FFW HEWNKHG+CSESKF+MKAYFQMAINMR+S+DLMNAL+VGGLAPNG +KS+QRVQSA+R  FGKEPVLRCRGTG N+RLIEIVMC
Subjt:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC

Query:  FDDDGVTLINCNPVSSNCANSFIF
        FDDDGVTLINCNP SSNCANSFIF
Subjt:  FDDDGVTLINCNPVSSNCANSFIF

XP_022155091.1 ribonuclease MC-like [Momordica charantia]1.7e-66100Show/hide
Query:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC
        RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC
Subjt:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC

Query:  FDDDGVTLINCNPVSSNCANSFIF
        FDDDGVTLINCNPVSSNCANSFIF
Subjt:  FDDDGVTLINCNPVSSNCANSFIF

XP_038905534.1 ribonuclease MC-like [Benincasa hispida]2.1e-4568.8Show/hide
Query:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSN--IRLIEIVM
        VWPNVITG+NKFFW HEWNKHG+CSESKF+  AYFQ AINMR+SIDL++ ++ GG+ PNG SK+KQRV+S + +HFGK+P+LRC+ T SN  + L E+VM
Subjt:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSN--IRLIEIVM

Query:  CFDDDGVTLINCNPVSSNCANSFIF
        CFDDDGVTL+NCN   SNCA SFIF
Subjt:  CFDDDGVTLINCNPVSSNCANSFIF

TrEMBL top hitse value%identityAlignment
A0A0A0LC37 Ribonuclease T(2)4.0e-4566.94Show/hide
Query:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSNIRLIEIVMC
        VWPNV+TG+NKFFW HEWNKHG+CSESKF+   YFQ AINMR+ IDL++ L+ GG+ PNG SK+KQRV++A+ +HFGK+P+LRC + +   + L EIVMC
Subjt:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSNIRLIEIVMC

Query:  FDDDGVTLINCNPVSSNCANSFIF
        FDDDGVTLINCN   SNCA SFIF
Subjt:  FDDDGVTLINCNPVSSNCANSFIF

A0A5A7UJY4 Ribonuclease MC-like8.8e-4568Show/hide
Query:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSN--IRLIEIVM
        VWPNV+TG+NKFFW HEWNKHG+CSESKF+   YFQ AINMR+SIDL++ L+ GG+ PNG SK+KQRV++A+ +HF K+P+LRC+ T SN  + L EIV+
Subjt:  VWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSN--IRLIEIVM

Query:  CFDDDGVTLINCNPVSSNCANSFIF
        CFDDDGVTLINCN   SNCA SFIF
Subjt:  CFDDDGVTLINCNPVSSNCANSFIF

A0A6J1CKH7 Ribonuclease T(2)2.8e-5986.29Show/hide
Query:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC
        RVWPNVITG+N+FFW HEWNKHG+CSESKF+MKAYFQMAINMR+S+DLMNAL+VGGLAPNG +KS+QRVQSA+R  FGKEPVLRCRGTG N+RLIEIVMC
Subjt:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC

Query:  FDDDGVTLINCNPVSSNCANSFIF
        FDDDGVTLINCNP SSNCANSFIF
Subjt:  FDDDGVTLINCNPVSSNCANSFIF

A0A6J1DQN7 ribonuclease MC-like8.2e-67100Show/hide
Query:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC
        RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC
Subjt:  RVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMC

Query:  FDDDGVTLINCNPVSSNCANSFIF
        FDDDGVTLINCNPVSSNCANSFIF
Subjt:  FDDDGVTLINCNPVSSNCANSFIF

Q40115 Ribonuclease (RNase LC1)5.7e-5277.87Show/hide
Query:  WPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCFD
        WPNVITG+NK+FW HEWNKHG+CS SKF+ +AYFQMAINMRNSIDL++AL+VGG+ PNG SK++QRVQSA+R   GKEPVLRCRGTG   RL+EIVMCFD
Subjt:  WPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCFD

Query:  DDGVTLINCNPVSSNCANSFIF
        DDGVTLINCNP +SNC NSFIF
Subjt:  DDGVTLINCNPVSSNCANSFIF

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC1.1e-2846.21Show/hide
Query:  LPSISRRVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSN--I
        L S    +WPNV+  +N+ FWSHEW KHG CSES FN  AYF++A++MRN+ D++ AL+     PNG +KS+Q ++  L+  FGK P LRCR        
Subjt:  LPSISRRVWPNVITGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSN--I

Query:  RLIEIVMCFDDDGVTLINCNPVSSNCANSFIF
         L+++V CF  DG TLI+C      C  +FIF
Subjt:  RLIEIVMCFDDDGVTLINCNPVSSNCANSFIF

P42813 Ribonuclease 12.6e-1735.65Show/hide
Query:  RRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGS-NIRLIE
        ++ WP +   +G  + FW HEW KHG CSES  +   YFQ A+N++   +L+ AL   G+ P+G S S + ++ +++   G  P + C   GS N +L +
Subjt:  RRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGS-NIRLIE

Query:  IVMCFDDDGVTLINC
        + +C D  G  LI C
Subjt:  IVMCFDDDGVTLINC

P42815 Ribonuclease 36.6e-1329.17Show/hide
Query:  LPSISRRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSN
        L S  +R WP +   + D   FW+HEW KHG C+ES+ +   YF+  + ++   +L++AL   G+ P+      + +++ ++   G  P + C + +  N
Subjt:  LPSISRRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSN

Query:  IRLIEIVMCFDDDGVTLINC
         +L +I +C D      INC
Subjt:  IRLIEIVMCFDDDGVTLINC

P80022 Extracellular ribonuclease LE3.7e-1633.82Show/hide
Query:  LPSISRRVWPNVI--TGDNKFFWSHEWNKHGVCSESKF-NMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCR-GTGS
        L S  ++ WP +   +G    FWSHEW KHG C+ES   N  AYF+ A++++N IDL++ L+   + P+G S     +++A+++  G  P ++C      
Subjt:  LPSISRRVWPNVI--TGDNKFFWSHEWNKHGVCSESKF-NMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCR-GTGS

Query:  NIRLIEIVMCFDDDGVTLINCNPV--SSNCANSFIF
        N +L ++ +C D  G +LI C P+     C  S  F
Subjt:  NIRLIEIVMCFDDDGVTLINCNPV--SSNCANSFIF

Q40381 Ribonuclease S-71.5e-1232.17Show/hide
Query:  WPNVITGD-----NKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAP-NGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIE
        WP++ T +     ++ FW HE+NKHG C    +N + YF +A+ +++  DL+++L+  G+ P  G+  + Q++ S ++      P L C  T   + L+E
Subjt:  WPNVITGD-----NKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAP-NGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIE

Query:  IVMCFDDDGVTLINC
        I +CFD     +INC
Subjt:  IVMCFDDDGVTLINC

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein3.3e-1230.36Show/hide
Query:  WSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSNIRLIEIVMCFDDDGVTLINCNP
        W HEWNKHG C +S F+  +YF+  +  ++ + L+N L   G+ PN    S   +++A++   G  P + C      N +L +I +C D+     + C  
Subjt:  WSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSNIRLIEIVMCFDDDGVTLINCNP

Query:  V-SSNCANSFIF
        V   +CA+   F
Subjt:  V-SSNCANSFIF

AT1G14220.1 Ribonuclease T2 family protein7.9e-1430.83Show/hide
Query:  LPSISRRVWPNVITGDNK--FFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSN
        L S  ++ WP +    N+   FW HEW KHG CSES  +   YF+ A+ ++   +L+  LK  G+ P+    +  ++ +A++   G  P + C +    N
Subjt:  LPSISRRVWPNVITGDNK--FFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSN

Query:  IRLIEIVMCFDDDGVTLINC
         +L +I +C D  G   I C
Subjt:  IRLIEIVMCFDDDGVTLINC

AT1G26820.1 ribonuclease 34.7e-1429.17Show/hide
Query:  LPSISRRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSN
        L S  +R WP +   + D   FW+HEW KHG C+ES+ +   YF+  + ++   +L++AL   G+ P+      + +++ ++   G  P + C + +  N
Subjt:  LPSISRRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRC-RGTGSN

Query:  IRLIEIVMCFDDDGVTLINC
         +L +I +C D      INC
Subjt:  IRLIEIVMCFDDDGVTLINC

AT2G02990.1 ribonuclease 11.8e-1835.65Show/hide
Query:  RRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGS-NIRLIE
        ++ WP +   +G  + FW HEW KHG CSES  +   YFQ A+N++   +L+ AL   G+ P+G S S + ++ +++   G  P + C   GS N +L +
Subjt:  RRVWPNVI--TGDNKFFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGS-NIRLIE

Query:  IVMCFDDDGVTLINC
        + +C D  G  LI C
Subjt:  IVMCFDDDGVTLINC

AT2G39780.1 ribonuclease 21.5e-0428.16Show/hide
Query:  PNVITGDNKFFWSHEWNKHGVCSESKFNMK-AYFQMAINMRNSIDLMNAL-KVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCF
        P+   G    FW HEW KHG CS   F+ +  YF   +N+    ++ + L + G +A N        + +A++  F   P + C+       + EI +CF
Subjt:  PNVITGDNKFFWSHEWNKHGVCSESKFNMK-AYFQMAINMRNSIDLMNAL-KVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCF

Query:  DDD
          D
Subjt:  DDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCTCGTCCACGAGAATGATGAGACAGTGGGCGATAATTGGCCATCATGGCAGTGGATTGGAATATGGACTCTACACCTTTGGCTTGAGAAAAGATTGCAGCTT
CTTTTGTTTTAAGAAGAACATGAAGTTCTTCCACACGAACAGGACTGGACCATACCCAAAACTAGTTTCCAACAAGGACGATGTGTCGGACAAGGGCTACGAACCTTCAC
AATCCATGGCGTGTGGCCGCAAAAGGGAGGCACCTCTGTTGTTAATTGCCCTGGCACTCCCTTCGATTTCACGAAGAGTATGGCCGAACGTTATAACGGGAGACAACAAA
TTTTTCTGGTCACATGAGTGGAACAAGCATGGGGTTTGCTCAGAGAGTAAATTCAACATGAAAGCGTACTTCCAAATGGCTATTAATATGAGAAATAGTATCGATCTTAT
GAATGCCCTCAAAGTTGGTGGGTTAGCACCAAACGGGCTCAGCAAGTCAAAGCAAAGAGTACAGAGTGCACTACGAACACACTTTGGGAAGGAACCTGTTCTTCGCTGTA
GAGGAACTGGCAGCAACATCCGATTGATAGAGATTGTGATGTGTTTTGACGATGATGGTGTCACTCTTATCAACTGTAATCCTGTCAGTTCCAACTGTGCTAATAGCTTT
ATATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCTCGTCCACGAGAATGATGAGACAGTGGGCGATAATTGGCCATCATGGCAGTGGATTGGAATATGGACTCTACACCTTTGGCTTGAGAAAAGATTGCAGCTT
CTTTTGTTTTAAGAAGAACATGAAGTTCTTCCACACGAACAGGACTGGACCATACCCAAAACTAGTTTCCAACAAGGACGATGTGTCGGACAAGGGCTACGAACCTTCAC
AATCCATGGCGTGTGGCCGCAAAAGGGAGGCACCTCTGTTGTTAATTGCCCTGGCACTCCCTTCGATTTCACGAAGAGTATGGCCGAACGTTATAACGGGAGACAACAAA
TTTTTCTGGTCACATGAGTGGAACAAGCATGGGGTTTGCTCAGAGAGTAAATTCAACATGAAAGCGTACTTCCAAATGGCTATTAATATGAGAAATAGTATCGATCTTAT
GAATGCCCTCAAAGTTGGTGGGTTAGCACCAAACGGGCTCAGCAAGTCAAAGCAAAGAGTACAGAGTGCACTACGAACACACTTTGGGAAGGAACCTGTTCTTCGCTGTA
GAGGAACTGGCAGCAACATCCGATTGATAGAGATTGTGATGTGTTTTGACGATGATGGTGTCACTCTTATCAACTGTAATCCTGTCAGTTCCAACTGTGCTAATAGCTTT
ATATTTTGA
Protein sequenceShow/hide protein sequence
MATSSTRMMRQWAIIGHHGSGLEYGLYTFGLRKDCSFFCFKKNMKFFHTNRTGPYPKLVSNKDDVSDKGYEPSQSMACGRKREAPLLLIALALPSISRRVWPNVITGDNK
FFWSHEWNKHGVCSESKFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCRGTGSNIRLIEIVMCFDDDGVTLINCNPVSSNCANSF
IF