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Moc09g12220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g12220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:10343937..10346545
RNA-Seq ExpressionMoc09g12220
SyntenyMoc09g12220
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151295.1 uncharacterized protein LOC111019259 [Momordica charantia]6.5e-4073.11Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        NDLRFVL+++ P APA +ATVAV   YD+WIKA DKA+VYIL SIS+VL KKHE+ VTAKEIMDSLQSMFGQ SS+A+HE LKF+Y SCMKE   VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLMIHFN+AE+N  +IDE
Subjt:  LNLMIHFNVAESNGGVIDE

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]6.5e-4884.03Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DL+FVL++DCPQA APNATVAVR  YD+WIKA DKAKVYILASISDVL KKHEDT+TAKEIMDSLQSMFGQPSS+ARHE LKFIY S MKE S VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESNG VIDE
Subjt:  LNLMIHFNVAESNGGVIDE

XP_022154837.1 uncharacterized protein LOC111022000 [Momordica charantia]2.5e-4782.35Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DLRFVL++DCPQAPAPNAT+AVRN YD+WIKA DKAKVYIL+SISDVL KKHEDTVTAKEIMDSLQSMFGQPSS+ARHE LKF+Y S MK+ S VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESN  VI E
Subjt:  LNLMIHFNVAESNGGVIDE

XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]6.7e-4580.67Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DLRFVL++DCPQAPAPNATVAVRN+YD+WIKA DKAKV ILASISDVL KKHE++V  KEIMDSLQSMFGQPSS+ARHE L  IY S MK+DS VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESN  VIDE
Subjt:  LNLMIHFNVAESNGGVIDE

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]7.2e-4782.35Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DLRFVL++DCPQAP  NATVAVRN YD+WIK+ DKAKVYILASISDVL KKHEDTVT KEIMDSLQSMFGQPS +ARHE LKF+Y S MKE S VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESNG VIDE
Subjt:  LNLMIHFNVAESNGGVIDE

TrEMBL top hitse value%identityAlignment
A0A6J1DAT1 uncharacterized protein LOC1110192593.2e-4073.11Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        NDLRFVL+++ P APA +ATVAV   YD+WIKA DKA+VYIL SIS+VL KKHE+ VTAKEIMDSLQSMFGQ SS+A+HE LKF+Y SCMKE   VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLMIHFN+AE+N  +IDE
Subjt:  LNLMIHFNVAESNGGVIDE

A0A6J1DFZ2 uncharacterized protein LOC1110200953.1e-4884.03Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DL+FVL++DCPQA APNATVAVR  YD+WIKA DKAKVYILASISDVL KKHEDT+TAKEIMDSLQSMFGQPSS+ARHE LKFIY S MKE S VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESNG VIDE
Subjt:  LNLMIHFNVAESNGGVIDE

A0A6J1DMS3 uncharacterized protein LOC1110220001.2e-4782.35Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DLRFVL++DCPQAPAPNAT+AVRN YD+WIKA DKAKVYIL+SISDVL KKHEDTVTAKEIMDSLQSMFGQPSS+ARHE LKF+Y S MK+ S VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESN  VI E
Subjt:  LNLMIHFNVAESNGGVIDE

A0A6J1DW68 uncharacterized protein LOC1110246373.3e-4580.67Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DLRFVL++DCPQAPAPNATVAVRN+YD+WIKA DKAKV ILASISDVL KKHE++V  KEIMDSLQSMFGQPSS+ARHE L  IY S MK+DS VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESN  VIDE
Subjt:  LNLMIHFNVAESNGGVIDE

A0A6J1DWL0 uncharacterized protein LOC1110247343.5e-4782.35Show/hide
Query:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV
        +DLRFVL++DCPQAP  NATVAVRN YD+WIK+ DKAKVYILASISDVL KKHEDTVT KEIMDSLQSMFGQPS +ARHE LKF+Y S MKE S VREHV
Subjt:  NDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASISDVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHV

Query:  LNLMIHFNVAESNGGVIDE
        LNLM+HFNVAESNG VIDE
Subjt:  LNLMIHFNVAESNGGVIDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATGAGATATCCATTTGCTACCTTCCTCATTTGAAAGAATGCTATCTCTCATCATTTCGAACCACTACTGCCCAAATCTTCACGACTCTCTCCCAAGATACCCT
AGGTATTCATCCTCCAACTTCAAACAAGGAATACTACAGCCATAGGAAGCAAGGCGACTTAACAAGGTTTTCCCAAGCCTCAAATGATCTTAGGTTCGTCTTAGAAAAGG
ATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAATGTCTATGACAAATGGATCAAGGCCAAAGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCT
GATGTGCTTGGTAAGAAGCATGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTACAGAGCATGTTTGGACAACCGTCCTCAGAGGCTCGGCATGAAACCCTTAA
GTTCATTTACATCTCCTGCATGAAGGAGGACTCCTTAGTGCGAGAACACGTTCTCAACCTGATGATCCACTTCAACGTGGCAGAGTCGAACGGGGGTGTCATAGACGAGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATGAGATATCCATTTGCTACCTTCCTCATTTGAAAGAATGCTATCTCTCATCATTTCGAACCACTACTGCCCAAATCTTCACGACTCTCTCCCAAGATACCCT
AGGTATTCATCCTCCAACTTCAAACAAGGAATACTACAGCCATAGGAAGCAAGGCGACTTAACAAGGTTTTCCCAAGCCTCAAATGATCTTAGGTTCGTCTTAGAAAAGG
ATTGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAATGTCTATGACAAATGGATCAAGGCCAAAGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCT
GATGTGCTTGGTAAGAAGCATGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTACAGAGCATGTTTGGACAACCGTCCTCAGAGGCTCGGCATGAAACCCTTAA
GTTCATTTACATCTCCTGCATGAAGGAGGACTCCTTAGTGCGAGAACACGTTCTCAACCTGATGATCCACTTCAACGTGGCAGAGTCGAACGGGGGTGTCATAGACGAGT
AG
Protein sequenceShow/hide protein sequence
MGNEISICYLPHLKECYLSSFRTTTAQIFTTLSQDTLGIHPPTSNKEYYSHRKQGDLTRFSQASNDLRFVLEKDCPQAPAPNATVAVRNVYDKWIKAKDKAKVYILASIS
DVLGKKHEDTVTAKEIMDSLQSMFGQPSSEARHETLKFIYISCMKEDSLVREHVLNLMIHFNVAESNGGVIDE