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Moc09g12480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g12480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:10679250..10681464
RNA-Seq ExpressionMoc09g12480
SyntenyMoc09g12480
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]7.1e-4764.24Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M+ S+I+LL   +L G+NY  WK NLN ILVIDDL FVL E CP+A  P+ T  V +AYD+W K N KA+VYILA+ISD+LAKK E  ITA EIMD L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINE
        M G+PSSQ  HEAL+FI+NS MKEG+S+REHVL +MVHFN+AE NGAVI+E
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINE

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]2.5e-4460.39Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M+ S+I+LL   KL G+NY  WK NLN ILVIDDL FVL E CP+AP  + T  V  AYD+W K N KA+VYILA+ISD+LAKK E  +T  EIMD L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNE
        M G+PS Q  HEAL+F++NS MKEG+S+REHVL +MVHFN+AE NG VI+E ++
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNE

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]4.3e-4457.42Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M+ S I LL +DKL GDNY  WK NLN ILVIDDL FVL E CP AP P+  + V  AYD+W K N KARVYILA+IS++L+KK E + T  EIMD L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNEI
        + G+PS+ +MH+A+++++N  MKEG+S+REHVL MMVHFN+AE+N  V+NE +++
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNEI

XP_022158927.1 uncharacterized protein LOC111025384 [Momordica charantia]1.9e-4471.97Show/hide
Query:  INLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRDMLGKPSSQVMHEALEFIFNSWMK
        +NLN  LV+DDLY VL E C EAPGP  TKVV +AYD+ T  N KARVYILA+ISD+L KK E MITA EIMD L DM GKPSSQVMHEAL+FIFNS MK
Subjt:  INLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRDMLGKPSSQVMHEALEFIFNSWMK

Query:  EGTSIREHVLGMMVHFNMAEMNGAVINESNEI
        EGTS+REHVLGMMVHFN+ +MN A+INES+++
Subjt:  EGTSIREHVLGMMVHFNMAEMNGAVINESNEI

XP_038904195.1 uncharacterized protein LOC120090541 [Benincasa hispida]8.7e-4557.42Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M+ S+I LL ++KL GDNY TWK N+N ILVIDDL FVL E CP +PGP   + V  AYD W K N KA+VYILA+I D+L+KK E + TA EI+D L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNEI
        + G+PS+  MH+A++F++N  MKEGT +REHVL MMVHFN+AE+NG V+NE +++
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNEI

TrEMBL top hitse value%identityAlignment
A0A6J1DFZ2 uncharacterized protein LOC1110200953.5e-4764.24Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M+ S+I+LL   +L G+NY  WK NLN ILVIDDL FVL E CP+A  P+ T  V +AYD+W K N KA+VYILA+ISD+LAKK E  ITA EIMD L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINE
        M G+PSSQ  HEAL+FI+NS MKEG+S+REHVL +MVHFN+AE NGAVI+E
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINE

A0A6J1DUZ9 uncharacterized protein LOC1110242942.1e-4458.44Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M  S++ LL ++KL G NY TWK NLN ILV+DDL FVL E CP+ P  +  + V  A+D+W K N KARVYILA+++D+LAKK E ++TA EIMD L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNE
        M G+PSS + HEAL++++N  MKEGTS+REHVL MMVHFN AE+NGA I+E+ E
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNE

A0A6J1DWG6 uncharacterized protein LOC1110250212.1e-4457.42Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M+ S I LL +DKL GDNY  WK NLN ILVIDDL FVL E CP AP P+  + V  AYD+W K N KARVYILA+IS++L+KK E + T  EIMD L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNEI
        + G+PS+ +MH+A+++++N  MKEG+S+REHVL MMVHFN+AE+N  V+NE +++
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNEI

A0A6J1DWL0 uncharacterized protein LOC1110247341.2e-4460.39Show/hide
Query:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD
        M+ S+I+LL   KL G+NY  WK NLN ILVIDDL FVL E CP+AP  + T  V  AYD+W K N KA+VYILA+ISD+LAKK E  +T  EIMD L+ 
Subjt:  MAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRD

Query:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNE
        M G+PS Q  HEAL+F++NS MKEG+S+REHVL +MVHFN+AE NG VI+E ++
Subjt:  MLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNE

A0A6J1DYF7 uncharacterized protein LOC1110253849.4e-4571.97Show/hide
Query:  INLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRDMLGKPSSQVMHEALEFIFNSWMK
        +NLN  LV+DDLY VL E C EAPGP  TKVV +AYD+ T  N KARVYILA+ISD+L KK E MITA EIMD L DM GKPSSQVMHEAL+FIFNS MK
Subjt:  INLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKREIMITALEIMDLLRDMLGKPSSQVMHEALEFIFNSWMK

Query:  EGTSIREHVLGMMVHFNMAEMNGAVINESNEI
        EGTS+REHVLGMMVHFN+ +MN A+INES+++
Subjt:  EGTSIREHVLGMMVHFNMAEMNGAVINESNEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCGCTTCGTGTGCCTTAGGAGCGTCCTCCCTTCGGAAGGTGTTTGCATGGGTCAATATCAAGCAATGATGGCTATGTCTTTAATTTCACTTCTCACCACTGATAA
ACTAACTGGGGATAACTATCCTACATGGAAAATAAACCTTAACGCCATACTCGTAATAGATGATCTCTACTTTGTCTTAATGGAGGCCTGTCCGGAGGCCCCTGGACCTG
ATACCACGAAAGTTGTTTGTGTCGCATATGACAAGTGGACAAAGGTCAATTCAAAGGCCCGAGTTTACATTTTGGCCAACATATCTGATATTTTGGCCAAGAAGCGTGAA
ATCATGATCACTGCACTCGAGATCATGGATTTATTGCGCGACATGCTTGGAAAACCTTCCTCACAAGTCATGCATGAAGCTCTCGAATTCATCTTCAACTCATGGATGAA
AGAGGGAACATCTATCCGGGAACATGTTCTCGGCATGATGGTCCACTTCAACATGGCAGAGATGAATGGCGCTGTCATCAATGAGTCCAACGAAATCATTTTATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCCGCTTCGTGTGCCTTAGGAGCGTCCTCCCTTCGGAAGGTGTTTGCATGGGTCAATATCAAGCAATGATGGCTATGTCTTTAATTTCACTTCTCACCACTGATAA
ACTAACTGGGGATAACTATCCTACATGGAAAATAAACCTTAACGCCATACTCGTAATAGATGATCTCTACTTTGTCTTAATGGAGGCCTGTCCGGAGGCCCCTGGACCTG
ATACCACGAAAGTTGTTTGTGTCGCATATGACAAGTGGACAAAGGTCAATTCAAAGGCCCGAGTTTACATTTTGGCCAACATATCTGATATTTTGGCCAAGAAGCGTGAA
ATCATGATCACTGCACTCGAGATCATGGATTTATTGCGCGACATGCTTGGAAAACCTTCCTCACAAGTCATGCATGAAGCTCTCGAATTCATCTTCAACTCATGGATGAA
AGAGGGAACATCTATCCGGGAACATGTTCTCGGCATGATGGTCCACTTCAACATGGCAGAGATGAATGGCGCTGTCATCAATGAGTCCAACGAAATCATTTTATTCTAG
Protein sequenceShow/hide protein sequence
MLRFVCLRSVLPSEGVCMGQYQAMMAMSLISLLTTDKLTGDNYPTWKINLNAILVIDDLYFVLMEACPEAPGPDTTKVVCVAYDKWTKVNSKARVYILANISDILAKKRE
IMITALEIMDLLRDMLGKPSSQVMHEALEFIFNSWMKEGTSIREHVLGMMVHFNMAEMNGAVINESNEIILF