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Moc09g12560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g12560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon gag domain-containing protein
Genome locationchr9:10746303..10747008
RNA-Seq ExpressionMoc09g12560
SyntenyMoc09g12560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3949672.1 hypothetical protein CMV_024487 [Castanea mollissima]4.2e-0538.04Show/hide
Query:  KKSTTSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKE--DPLKE
        K  T  +T+         Q+L  ++D   L     L +  +KR + +YC FH+DH HDTS+C NLK+Q K L+ +G   R++ KE  DP KE
Subjt:  KKSTTSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKE--DPLKE

MQL88744.1 hypothetical protein [Colocasia esculenta]6.5e-0637.36Show/hide
Query:  TSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKGS--RYLWK--EDPLKEIHT
        T+YT L        QILA + + + ++    +H    KRDQ++YCRFH+DH HDTS C  LK + + L+ +G+  R++ +  E P +  HT
Subjt:  TSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKGS--RYLWK--EDPLKEIHT

XP_028119485.1 uncharacterized protein LOC114316974 [Camellia sinensis]1.1e-0550Show/hide
Query:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG
        Q+L  ++   LLK    L  PS++RDQS+YCRFHQDH H+T  C NLK Q ++L+ +G
Subjt:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG

XP_030929562.1 uncharacterized protein LOC115955545 [Quercus lobata]3.2e-0539.77Show/hide
Query:  TSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKE--DPLKE
        TS+T L    T   Q+L  ++D   L+    L    +KR + +YCRFH+DH HDT+NC +LK+Q + L+ +G   R++ KE  DP +E
Subjt:  TSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKE--DPLKE

XP_030936419.1 uncharacterized protein LOC115961609 [Quercus lobata]8.4e-0629.37Show/hide
Query:  PDDPLDDAQATEGESLQNY-----------DDMKCYALMAGLKQDCLVISLY----KKSTTSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRD
        P   L + Q  EGESL+ Y           D+ K   ++   +   L+   +    K    +   L  +A K+M +L  + D   L+    +  P+ K+D
Subjt:  PDDPLDDAQATEGESLQNY-----------DDMKCYALMAGLKQDCLVISLY----KKSTTSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRD

Query:  QSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKEDP
        +++YCRFHQDH H T+ C + K Q +TL+ +G   +Y+ K +P
Subjt:  QSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKEDP

TrEMBL top hitse value%identityAlignment
A0A1Q3BZ55 Uncharacterized protein4.5e-0531.73Show/hide
Query:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYL-----------------------WKEDPLKEIHTIF
        +ILA  +D   ++  + +  P+ KR+  +YCR+H+DH HDT  C  LK Q K L+ KG   +Y+                        +++P+  IHTIF
Subjt:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYL-----------------------WKEDPLKEIHTIF

Query:  GDLA
        G +A
Subjt:  GDLA

A0A1Q3CBJ7 Uncharacterized protein7.7e-0539.13Show/hide
Query:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKEDP
        +ILA  +D  L++  + L  P+ +RD  +YCR+H+DH HDT  C  LK Q + L+ +G   +Y+ +E P
Subjt:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG--SRYLWKEDP

A0A1Q3CPM1 Uncharacterized protein1.0e-0432.58Show/hide
Query:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKGSRYLWKEDPL--------KEIHTIFGDLAGG
        +IL   +D   ++    L  P+ K D ++YCR+H+DH HDT  C +LK Q + L+ KG    + E+ L        K++H++   ++GG
Subjt:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKGSRYLWKEDPL--------KEIHTIFGDLAGG

A0A2U1LNB2 Retrotransposon gag domain-containing protein4.5e-0539.47Show/hide
Query:  KKSTTSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG
        + ST   T  P   T   +I A+ E  SLL+    +  P+H+RD++RYC FH DH HDT++C +L+K+ +T +  G
Subjt:  KKSTTSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKG

A0A6J1D8C9 uncharacterized protein LOC1110183005.9e-0534.02Show/hide
Query:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKGSRYLWKED-------------PLKEIHTIFGDLAGGSFG
        Q+L  ++   LL+  + ++ P  KR + RYC FH+DH H T +C +LKK+ K L+ +G    + ED             P +EI TI G      FG
Subjt:  QILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTSNCNNLKKQAKTLLAKGSRYLWKED-------------PLKEIHTIFGDLAGGSFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTCTGATGCCCGACGACCCACTTGATGATGCTCAAGCAACAGAAGGCGAATCCCTGCAAAACTACGATGACATGAAGTGTTATGCTCTGATGGCCGGACTC
AAACAAGATTGTCTGGTGATTTCACTGTACAAGAAGTCAACCACTTCCTACACCGCACTCCCTGCTCGTGCCACCAAGTTCATGCAGATTCTGGCTAGTATGGAG
GACCTAAGCTTACTCAAGCTTTCCGACCATCTGCATCAACCCTCCCACAAGCGCGACCAAAGCCGATACTGTCGCTTTCACCAGGATCACTGCCATGACACGTCG
AATTGCAACAACCTGAAGAAGCAGGCCAAAACCTTGCTCGCCAAAGGGTCAAGGTACCTTTGGAAAGAAGACCCTCTAAAGGAAATCCACACCATCTTTGGCGAC
CTTGCTGGAGGATCGTTTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTCTGATGCCCGACGACCCACTTGATGATGCTCAAGCAACAGAAGGCGAATCCCTGCAAAACTACGATGACATGAAGTGTTATGCTCTGATGGCCGGACTC
AAACAAGATTGTCTGGTGATTTCACTGTACAAGAAGTCAACCACTTCCTACACCGCACTCCCTGCTCGTGCCACCAAGTTCATGCAGATTCTGGCTAGTATGGAG
GACCTAAGCTTACTCAAGCTTTCCGACCATCTGCATCAACCCTCCCACAAGCGCGACCAAAGCCGATACTGTCGCTTTCACCAGGATCACTGCCATGACACGTCG
AATTGCAACAACCTGAAGAAGCAGGCCAAAACCTTGCTCGCCAAAGGGTCAAGGTACCTTTGGAAAGAAGACCCTCTAAAGGAAATCCACACCATCTTTGGCGAC
CTTGCTGGAGGATCGTTTGGATAA
Protein sequenceShow/hide protein sequence
MRLMPDDPLDDAQATEGESLQNYDDMKCYALMAGLKQDCLVISLYKKSTTSYTALPARATKFMQILASMEDLSLLKLSDHLHQPSHKRDQSRYCRFHQDHCHDTS
NCNNLKKQAKTLLAKGSRYLWKEDPLKEIHTIFGDLAGGSFG