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Moc09g12640 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g12640
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag-pro-like protein
Genome locationchr9:10803097..10803868
RNA-Seq ExpressionMoc09g12640
SyntenyMoc09g12640
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038145.1 Gag-pro-like protein [Cucumis melo var. makuwa]5.1e-3447.25Show/hide
Query:  MTDQKAEQKKIRKDIEELREKLDVI--LFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTM-YNPLYDIP-----VVIPSKFKV
        M ++  +  K+R++I  L E++  I  L ++ KGK V D   SSN + +  + P +P G++P    V +    QH +  NPLY +P     ++IP+KFKV
Subjt:  MTDQKAEQKKIRKDIEELREKLDVI--LFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTM-YNPLYDIP-----VVIPSKFKV

Query:  LEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
         EF+KYDGS+C ++HLIMYCRK+  ++ NDKLL+H  QDSL+  ASR Y+QLD+ H+  WK+L D+FLKQYKH IDMA DRL
Subjt:  LEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]3.9e-3485.71Show/hide
Query:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
        +VIP KFKV EFEKYDGSSC KNHLIMYCRKM  YVQNDKLLIH  QDSLSSPASR YMQLDS HVGSWKNL DSFLKQYKH IDMA DRL
Subjt:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.0e-4746.59Show/hide
Query:  DQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGY-------SPPFRPVAEGFMPQHTMYNPLYDIP------------
        D+K+EQ+K RKDIEELREKLD IL ALEKGKT+A+   +SN +HEP  TP +P G+        P FRP+ EGFM Q+T YNPLYDIP            
Subjt:  DQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGY-------SPPFRPVAEGFMPQHTMYNPLYDIP------------

Query:  -------------------------------------------------------------------------VVIPSKFKVLEFEKYDGSSCLKNHLIM
                                                                                 +VIP KFK+ EFEKY+GSSC KNHLIM
Subjt:  -------------------------------------------------------------------------VVIPSKFKVLEFEKYDGSSCLKNHLIM

Query:  YCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
        YCRKM  Y+QNDKLLIH  QDSLS P S  YM LDS HV SWKNL DSFLKQYKH IDM  DRL
Subjt:  YCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.2e-6054.05Show/hide
Query:  MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTMYNPLYDIPV----------------
        M DQKAEQ+K RKDIEELREKLD I   LEKGK  ADPATSSN +HEPQETPPYP GY PP RPVAEGFMPQ+T YNPLYD+P+                
Subjt:  MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTMYNPLYDIPV----------------

Query:  ---------------------------------------------------------------------VIPSKFKVLEFEKYDGSSCLKNHLIMYCRKM
                                                                             VIP KFKV EFEKYDGSSC KNHLIMYCRKM
Subjt:  ---------------------------------------------------------------------VIPSKFKVLEFEKYDGSSCLKNHLIMYCRKM

Query:  TVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
          YVQN KLLIH  QDSL   ASR YMQLDS HVGSWKNL DSFLKQYKH IDMA DRL
Subjt:  TVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]7.3e-3383.52Show/hide
Query:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
        +VIP KFKV EFEKYDGSSC KNHLIMYCRKM  YVQNDKLLIH  QDSLS PASR YMQLDS +VGSWKNL DSFLKQYKH IDMA DRL
Subjt:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

TrEMBL top hitse value%identityAlignment
A0A5A7T9N7 Gag-pro-like protein2.5e-3447.25Show/hide
Query:  MTDQKAEQKKIRKDIEELREKLDVI--LFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTM-YNPLYDIP-----VVIPSKFKV
        M ++  +  K+R++I  L E++  I  L ++ KGK V D   SSN + +  + P +P G++P    V +    QH +  NPLY +P     ++IP+KFKV
Subjt:  MTDQKAEQKKIRKDIEELREKLDVI--LFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTM-YNPLYDIP-----VVIPSKFKV

Query:  LEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
         EF+KYDGS+C ++HLIMYCRK+  ++ NDKLL+H  QDSL+  ASR Y+QLD+ H+  WK+L D+FLKQYKH IDMA DRL
Subjt:  LEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

A0A6J1CNY7 Ribonuclease H1.9e-3485.71Show/hide
Query:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
        +VIP KFKV EFEKYDGSSC KNHLIMYCRKM  YVQNDKLLIH  QDSLSSPASR YMQLDS HVGSWKNL DSFLKQYKH IDMA DRL
Subjt:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.1e-4746.97Show/hide
Query:  DQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGY-------SPPFRPVAEGFMPQHTMYNPLYDIP------------
        D+K+EQ+K RKDIEELREKLD IL ALEKGKT+A+   +SN +HEP  TP +P G+        P FRP+ EGFM Q+T YNPLYDIP            
Subjt:  DQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGY-------SPPFRPVAEGFMPQHTMYNPLYDIP------------

Query:  -------------------------------------------------------------------------VVIPSKFKVLEFEKYDGSSCLKNHLIM
                                                                                 +VIP KFK+ EFEKYDGSSC KNHLIM
Subjt:  -------------------------------------------------------------------------VVIPSKFKVLEFEKYDGSSCLKNHLIM

Query:  YCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
        YCRKM  Y+QNDKLLIH  QDSLS P S  YM LDS HV SWKNL DSFLKQYKH IDM  DRL
Subjt:  YCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

A0A6J1DZ90 Ribonuclease H1.5e-6054.05Show/hide
Query:  MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTMYNPLYDIPV----------------
        M DQKAEQ+K RKDIEELREKLD I   LEKGK  ADPATSSN +HEPQETPPYP GY PP RPVAEGFMPQ+T YNPLYD+P+                
Subjt:  MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTMYNPLYDIPV----------------

Query:  ---------------------------------------------------------------------VIPSKFKVLEFEKYDGSSCLKNHLIMYCRKM
                                                                             VIP KFKV EFEKYDGSSC KNHLIMYCRKM
Subjt:  ---------------------------------------------------------------------VIPSKFKVLEFEKYDGSSCLKNHLIMYCRKM

Query:  TVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
          YVQN KLLIH  QDSL   ASR YMQLDS HVGSWKNL DSFLKQYKH IDMA DRL
Subjt:  TVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

A0A6J1E2J7 Ribonuclease H3.6e-3383.52Show/hide
Query:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL
        +VIP KFKV EFEKYDGSSC KNHLIMYCRKM  YVQNDKLLIH  QDSLS PASR YMQLDS +VGSWKNL DSFLKQYKH IDMA DRL
Subjt:  VVIPSKFKVLEFEKYDGSSCLKNHLIMYCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKH-IDMALDRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATCAAAAAGCTGAGCAGAAGAAAATAAGGAAAGACATTGAGGAGTTGCGCGAAAAGTTAGATGTCATCCTCTTCGCGTTAGAAAAAGGCAAGACGGTTGCGGA
TCCTGCTACATCTAGCAACCTCGTCCATGAGCCACAAGAAACCCCGCCTTATCCATTTGGGTACAGTCCACCTTTTAGGCCAGTAGCAGAGGGTTTCATGCCACAACATA
CAATGTACAACCCTCTGTATGATATTCCGGTTGTCATCCCTTCGAAGTTTAAGGTGCTAGAATTCGAGAAATATGATGGTTCTTCTTGTCTTAAGAACCACCTTATAATG
TACTGTAGGAAGATGACAGTGTACGTCCAAAATGACAAACTGTTGATACACTACATTCAAGATAGTTTATCTAGTCCAGCTTCTCGTTTGTACATGCAGTTGGACAGCTT
TCATGTCGGCTCGTGGAAGAATCTGGTCGACTCATTCCTTAAGCAATATAAACATATAGATATGGCTCTAGATCGCTTATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGATCAAAAAGCTGAGCAGAAGAAAATAAGGAAAGACATTGAGGAGTTGCGCGAAAAGTTAGATGTCATCCTCTTCGCGTTAGAAAAAGGCAAGACGGTTGCGGA
TCCTGCTACATCTAGCAACCTCGTCCATGAGCCACAAGAAACCCCGCCTTATCCATTTGGGTACAGTCCACCTTTTAGGCCAGTAGCAGAGGGTTTCATGCCACAACATA
CAATGTACAACCCTCTGTATGATATTCCGGTTGTCATCCCTTCGAAGTTTAAGGTGCTAGAATTCGAGAAATATGATGGTTCTTCTTGTCTTAAGAACCACCTTATAATG
TACTGTAGGAAGATGACAGTGTACGTCCAAAATGACAAACTGTTGATACACTACATTCAAGATAGTTTATCTAGTCCAGCTTCTCGTTTGTACATGCAGTTGGACAGCTT
TCATGTCGGCTCGTGGAAGAATCTGGTCGACTCATTCCTTAAGCAATATAAACATATAGATATGGCTCTAGATCGCTTATACTAG
Protein sequenceShow/hide protein sequence
MTDQKAEQKKIRKDIEELREKLDVILFALEKGKTVADPATSSNLVHEPQETPPYPFGYSPPFRPVAEGFMPQHTMYNPLYDIPVVIPSKFKVLEFEKYDGSSCLKNHLIM
YCRKMTVYVQNDKLLIHYIQDSLSSPASRLYMQLDSFHVGSWKNLVDSFLKQYKHIDMALDRLY