; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g14060 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g14060
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:11983827..11985379
RNA-Seq ExpressionMoc09g14060
SyntenyMoc09g14060
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY92744.1 hypothetical protein Acr_08g0011400 [Actinidia rufa]7.0e-1834.68Show/hide
Query:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGD-----------------------------------YQLDLLEELQEGTKQRM
        +R  FK  NN+ +Y+  + GL+   E     L ++S+S LVVNQV+GD                                     LDLL+E +E  +   
Subjt:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGD-----------------------------------YQLDLLEELQEGTKQRM

Query:  MTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH
        + YK    ++YN +++ ++F  G +VLRKV  STK P  G L  TWEGPY VIK+++P TY+L D  GK L +
Subjt:  MTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH

XP_020415508.1 uncharacterized protein LOC109948021 [Prunus persica]7.0e-1844.64Show/hide
Query:  YEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETY
        Y+AT     +D  L +N       LD ++EL++ +  R + YK+R A++Y+ R++PRAF++GD V+RKV  +TKNP  G L  TWEGPY +IK+ +P TY
Subjt:  YEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETY

Query:  YLSDAMGKVLTH
         L D+ GK L H
Subjt:  YLSDAMGKVLTH

XP_020415514.1 uncharacterized protein LOC109948028 [Prunus persica]9.1e-1845.54Show/hide
Query:  YEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETY
        Y+AT     +D  L +N       LD +EEL++ +  R   YK+R A++Y+ R++PRAF++GD V+RKV  +TKNP  G L  TWEGPY +IK+ +P TY
Subjt:  YEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETY

Query:  YLSDAMGKVLTH
         L D+ GK L H
Subjt:  YLSDAMGKVLTH

XP_020417276.1 uncharacterized protein LOC109948519 [Prunus persica]5.3e-1839.19Show/hide
Query:  RFEFKTLNNETKYK-----DFVVGLKASQ------EYEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDM
        R  F+T   ET +      + V  ++  Q       Y+AT     +D  L +N       LD ++EL++ +  R + YK+R A++Y+ R++PRAF++GD 
Subjt:  RFEFKTLNNETKYK-----DFVVGLKASQ------EYEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDM

Query:  VLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH
        VLRKV  +TKNP  G L  TWEGPY +IK+ +P TY L D+ GK L H
Subjt:  VLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH

XP_030945303.1 uncharacterized protein LOC115969823 [Quercus lobata]3.1e-1838.57Show/hide
Query:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGDY------------QLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVG
        +  +F   NNE KY+  V GL  ++   AT + +Y DS +V +QV  D+            QLDL++E++  T+QR+  Y+   A+HYN R++ R FQV 
Subjt:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGDY------------QLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVG

Query:  DMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYL
        D+VLRKV+ +T++P+ G L   WEGPY +    +  TY+L
Subjt:  DMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYL

TrEMBL top hitse value%identityAlignment
A0A2N9GIU6 Ribonuclease H3.7e-1751.14Show/hide
Query:  LDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH
        LDL++E++E  + RM  Y+E+ A+HYN R++PR   VGD+VLRKV  +TKNP+ G L   WEGPY VI++ +P TY+L D  G+ L H
Subjt:  LDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH

A0A2N9GIU6 Ribonuclease H2.6e-0235.8Show/hide
Query:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQR-MMTYKERSAQHYNVRM
        +R ++ T NNE +Y+  ++GL  ++   AT L ++SDS LVV QV GDY      E +EG  Q+ +   + + +Q   VR+
Subjt:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQR-MMTYKERSAQHYNVRM

A0A2N9IPQ6 Ribonuclease H1.7e-1752.27Show/hide
Query:  LDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH
        LDL++E++E  K RM  Y+E+ A+HYN R++PR   VGD+VLRKV  +TKNP+ G L   WEGPY VI++ +P TY+L D  G+ L H
Subjt:  LDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH

A0A2N9IPQ6 Ribonuclease H1.5e-0236.25Show/hide
Query:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRM
        +R ++ T NNE +Y+  +VGLK ++   AT L + SDS LVV QV GDY     E  +   +Q +   + + +Q   VR+
Subjt:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRM

A0A2N9IPQ6 Ribonuclease H3.7e-1751.55Show/hide
Query:  VNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH
        +N+ +    LDLLEE +E  + R M YK + A++YN R+R R+F  GD+VLRKV  STK P  G L  TWE PY VIK+++P TY+L D  GKVL+H
Subjt:  VNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH

A0A2N9J1F3 Ribonuclease H7.5e-1845.87Show/hide
Query:  TCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLS
        T  R+   S  V N+ +    LDL++E++E  + R+  Y+ER A+HYN R++PR   VGD+VLRKV  +TKNP+ G L   WEGPY VI++ +P TY+L 
Subjt:  TCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLS

Query:  DAMGKVLTH
        D  G+ L H
Subjt:  DAMGKVLTH

A0A7J0F238 RNase H domain-containing protein3.4e-1834.68Show/hide
Query:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGD-----------------------------------YQLDLLEELQEGTKQRM
        +R  FK  NN+ +Y+  + GL+   E     L ++S+S LVVNQV+GD                                     LDLL+E +E  +   
Subjt:  MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGD-----------------------------------YQLDLLEELQEGTKQRM

Query:  MTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH
        + YK    ++YN +++ ++F  G +VLRKV  STK P  G L  TWEGPY VIK+++P TY+L D  GK L +
Subjt:  MTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLTWEGPYVVIKLAQPETYYLSDAMGKVLTH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTTGAATTCAAGACCTTAAACAATGAGACCAAGTACAAGGATTTTGTCGTAGGACTGAAAGCCAGTCAAGAATATGAAGCAACTTGTCTCCGCATCTACAGTGA
CTCAATGTTGGTAGTAAACCAAGTTAAAGGAGATTATCAGTTGGATTTGTTAGAAGAGTTACAAGAAGGCACTAAGCAACGAATGATGACATACAAGGAACGTAGTGCGC
AACATTATAACGTTCGTATGCGACCACGAGCGTTTCAAGTTGGAGATATGGTTCTACGCAAAGTACTCCCTAGCACCAAGAACCCAACAAATGGTGTCCTTTGTCTTACA
TGGGAAGGTCCGTACGTGGTCATTAAGCTGGCTCAACCAGAAACTTATTACTTGTCTGATGCAATGGGAAAGGTATTGACCCATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTTGAATTCAAGACCTTAAACAATGAGACCAAGTACAAGGATTTTGTCGTAGGACTGAAAGCCAGTCAAGAATATGAAGCAACTTGTCTCCGCATCTACAGTGA
CTCAATGTTGGTAGTAAACCAAGTTAAAGGAGATTATCAGTTGGATTTGTTAGAAGAGTTACAAGAAGGCACTAAGCAACGAATGATGACATACAAGGAACGTAGTGCGC
AACATTATAACGTTCGTATGCGACCACGAGCGTTTCAAGTTGGAGATATGGTTCTACGCAAAGTACTCCCTAGCACCAAGAACCCAACAAATGGTGTCCTTTGTCTTACA
TGGGAAGGTCCGTACGTGGTCATTAAGCTGGCTCAACCAGAAACTTATTACTTGTCTGATGCAATGGGAAAGGTATTGACCCATAAATGA
Protein sequenceShow/hide protein sequence
MRFEFKTLNNETKYKDFVVGLKASQEYEATCLRIYSDSMLVVNQVKGDYQLDLLEELQEGTKQRMMTYKERSAQHYNVRMRPRAFQVGDMVLRKVLPSTKNPTNGVLCLT
WEGPYVVIKLAQPETYYLSDAMGKVLTHK