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Moc09g14070 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g14070
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:11986979..11989139
RNA-Seq ExpressionMoc09g14070
SyntenyMoc09g14070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.7e-2443.2Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + ++ L KWP +    S    +  YCLFH + GH T +C  LKEE+E +I  GYLKE+V+  + T    S        + P REIRTI  GP+  ES RK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA
        RK   R+AR                             L  PHNDALVITL IAN+RVHRILVDGGSSA
Subjt:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA

XP_022148331.1 uncharacterized protein LOC111017012 [Momordica charantia]6.0e-7082.35Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + DKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQAR----------------------------VLHQPHNDALVITLVIANIRVHRILVDGGSSAY
        RKIQARQAR                            VLHQPHNDALVITLVIANIRVHRILVDGGSSAY
Subjt:  RKIQARQAR----------------------------VLHQPHNDALVITLVIANIRVHRILVDGGSSAY

XP_022151636.1 uncharacterized protein LOC111019544 [Momordica charantia]5.0e-2443.2Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + D+ LFKWP + K       +  YCLFHR+ GH T +C  LKEE+E  I  GYLKE+++  + T  S +  KS      P REI+TI  G    ES RK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA
        RK+  R+AR                             L  PHNDALVITL IAN RVHRIL D GSSA
Subjt:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.1e-2640.4Show/hide
Query:  ESITPFTDSV------VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTRE
        E  TP T  +      + D+ L KWP + K  S    +  YCLFHR+ GH T +C  LKEE+E +I+ GYLKE+V+  + T    S        + P RE
Subjt:  ESITPFTDSV------VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTRE

Query:  IRTISSGPVGGESSRKRKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA----YGSFKASSL
        IRTI  GP+  ES RKRK   R+AR                             L  PHNDALVI L IAN++VHR+LVDGGSSA    + ++KA  L
Subjt:  IRTISSGPVGGESSRKRKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA----YGSFKASSL

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.7e-2444.97Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + D+ L KWP + K  S    +  YCLFHR+  H T +   LKEE+E +I+ GYL+E+V+  + T    S EKS      P REIRTI  GP+  ES+RK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQAR-------VLH---------------------QPHNDALVITLVIANIRVHRILVDGGSSA
        RK   R+AR       V H                      PHNDALVITL IAN++VHRILVDGGSSA
Subjt:  RKIQARQAR-------VLH---------------------QPHNDALVITLVIANIRVHRILVDGGSSA

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128058.3e-2543.2Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + ++ L KWP +    S    +  YCLFH + GH T +C  LKEE+E +I  GYLKE+V+  + T    S        + P REIRTI  GP+  ES RK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA
        RK   R+AR                             L  PHNDALVITL IAN+RVHRILVDGGSSA
Subjt:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA

A0A6J1D520 uncharacterized protein LOC1110170122.9e-7082.35Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + DKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQAR----------------------------VLHQPHNDALVITLVIANIRVHRILVDGGSSAY
        RKIQARQAR                            VLHQPHNDALVITLVIANIRVHRILVDGGSSAY
Subjt:  RKIQARQAR----------------------------VLHQPHNDALVITLVIANIRVHRILVDGGSSAY

A0A6J1DF96 uncharacterized protein LOC1110195442.4e-2443.2Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + D+ LFKWP + K       +  YCLFHR+ GH T +C  LKEE+E  I  GYLKE+++  + T  S +  KS      P REI+TI  G    ES RK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA
        RK+  R+AR                             L  PHNDALVITL IAN RVHRIL D GSSA
Subjt:  RKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA

A0A6J1DWY0 uncharacterized protein LOC1110252931.5e-2640.4Show/hide
Query:  ESITPFTDSV------VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTRE
        E  TP T  +      + D+ L KWP + K  S    +  YCLFHR+ GH T +C  LKEE+E +I+ GYLKE+V+  + T    S        + P RE
Subjt:  ESITPFTDSV------VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTRE

Query:  IRTISSGPVGGESSRKRKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA----YGSFKASSL
        IRTI  GP+  ES RKRK   R+AR                             L  PHNDALVI L IAN++VHR+LVDGGSSA    + ++KA  L
Subjt:  IRTISSGPVGGESSRKRKIQARQARV----------------------------LHQPHNDALVITLVIANIRVHRILVDGGSSA----YGSFKASSL

A0A6J1DYL6 uncharacterized protein LOC1110257858.3e-2544.97Show/hide
Query:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK
        + D+ L KWP + K  S    +  YCLFHR+  H T +   LKEE+E +I+ GYL+E+V+  + T    S EKS      P REIRTI  GP+  ES+RK
Subjt:  VADKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRK

Query:  RKIQARQAR-------VLH---------------------QPHNDALVITLVIANIRVHRILVDGGSSA
        RK   R+AR       V H                      PHNDALVITL IAN++VHRILVDGGSSA
Subjt:  RKIQARQAR-------VLH---------------------QPHNDALVITLVIANIRVHRILVDGGSSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTCAACGAGTTGTTCTAGTGGTTGTTCCAAGGCAAATGCGAAGTCACCACACTCGAGTTGCTCGAGATGTCCAAAGTACTCCATCTCCCACGCCCGAC
GAGATTCGACAAAAGGGAAATAACCCATGGAAGTCAGCGATGAAAAAGTCTGATCCCTGTACCACGAGAAAGAGCCATAATCCTTCCGAGGAAGGAAGACCATTC
CCTTGCAACCTTGTAAAAAATCTCCCTGTCAATAGGGGAAGAATGGAGGATGGATATGAACTGTCCGATGAATCTATTACCCCATTCACTGACAGCGTTGTAGCT
GATAAAAACCTCTTTAAATGGCCGATCAAAACAAAGCCAATCTCGTATCCCTGGGATCGGTGTTGGTATTGCCTGTTCCATCGAGAAACCGGACATAATACCTCC
GAGTGCATTCGTCTTAAGGAGGAAATTGAGTCCATAATACAGAATGGGTATCTCAAAGAATTTGTAGACCGGCGACGAGGGACCCTCCCCTCTACATCGAAAGAA
AAATCTCTAGTCAAAATCCAAGACCCCACGAGAGAAATTCGAACAATATCTAGCGGTCCCGTAGGAGGGGAGTCAAGTAGAAAGCGAAAGATTCAAGCCAGACAG
GCACGGGTTCTTCATCAACCTCATAATGATGCACTGGTCATTACGCTGGTTATAGCGAATATTAGAGTGCACCGCATTCTAGTGGATGGGGGAAGTTCGGCTTAT
GGATCATTCAAGGCGAGTAGTTTGCCGCTCATGAATGACATGGCTTTGAGAACCGATTCCCATGCAGAAAGGCGACCTCGAAAAACCCCAAGCAAAAACATCTTT
GGAACGGAGAAGCCTTCAGTAGCACCTCCAGTCAAGCTACCAGACAACGGAAAGCACATTCATGGTGAACCAGCAGAAGAAATTGAGAATGTCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTCAACGAGTTGTTCTAGTGGTTGTTCCAAGGCAAATGCGAAGTCACCACACTCGAGTTGCTCGAGATGTCCAAAGTACTCCATCTCCCACGCCCGAC
GAGATTCGACAAAAGGGAAATAACCCATGGAAGTCAGCGATGAAAAAGTCTGATCCCTGTACCACGAGAAAGAGCCATAATCCTTCCGAGGAAGGAAGACCATTC
CCTTGCAACCTTGTAAAAAATCTCCCTGTCAATAGGGGAAGAATGGAGGATGGATATGAACTGTCCGATGAATCTATTACCCCATTCACTGACAGCGTTGTAGCT
GATAAAAACCTCTTTAAATGGCCGATCAAAACAAAGCCAATCTCGTATCCCTGGGATCGGTGTTGGTATTGCCTGTTCCATCGAGAAACCGGACATAATACCTCC
GAGTGCATTCGTCTTAAGGAGGAAATTGAGTCCATAATACAGAATGGGTATCTCAAAGAATTTGTAGACCGGCGACGAGGGACCCTCCCCTCTACATCGAAAGAA
AAATCTCTAGTCAAAATCCAAGACCCCACGAGAGAAATTCGAACAATATCTAGCGGTCCCGTAGGAGGGGAGTCAAGTAGAAAGCGAAAGATTCAAGCCAGACAG
GCACGGGTTCTTCATCAACCTCATAATGATGCACTGGTCATTACGCTGGTTATAGCGAATATTAGAGTGCACCGCATTCTAGTGGATGGGGGAAGTTCGGCTTAT
GGATCATTCAAGGCGAGTAGTTTGCCGCTCATGAATGACATGGCTTTGAGAACCGATTCCCATGCAGAAAGGCGACCTCGAAAAACCCCAAGCAAAAACATCTTT
GGAACGGAGAAGCCTTCAGTAGCACCTCCAGTCAAGCTACCAGACAACGGAAAGCACATTCATGGTGAACCAGCAGAAGAAATTGAGAATGTCCCTTAA
Protein sequenceShow/hide protein sequence
MATQRVVLVVVPRQMRSHHTRVARDVQSTPSPTPDEIRQKGNNPWKSAMKKSDPCTTRKSHNPSEEGRPFPCNLVKNLPVNRGRMEDGYELSDESITPFTDSVVA
DKNLFKWPIKTKPISYPWDRCWYCLFHRETGHNTSECIRLKEEIESIIQNGYLKEFVDRRRGTLPSTSKEKSLVKIQDPTREIRTISSGPVGGESSRKRKIQARQ
ARVLHQPHNDALVITLVIANIRVHRILVDGGSSAYGSFKASSLPLMNDMALRTDSHAERRPRKTPSKNIFGTEKPSVAPPVKLPDNGKHIHGEPAEEIENVP