; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g14690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g14690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr9:12620875..12626158
RNA-Seq ExpressionMoc09g14690
SyntenyMoc09g14690
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2294485.1 hypothetical protein GH714_011845 [Hevea brasiliensis]2.6e-0726.47Show/hide
Query:  VEGLARQLRDDETTMS----NLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGEVECYYC
        V G  +Q  +D  T+     N   +  +    +    ++EE        + S   A +     LV+  +G+ +      +    + G  +    VEC+YC
Subjt:  VEGLARQLRDDETTMS----NLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGEVECYYC

Query:  HKKGHVERFCRKFKKYFEKGINTANVVTEEDQ--------VEEFKACVQRNI-----SVDQWIVDTTASAYVVSNKRCFSSFTAG-----KLDDDGFSSE
         KKGH+++FCRKFKK  ++G N    V +ED         V+EF      +I         W++D+ A+ YV S K  FS +T G     K+ +D  S  
Subjt:  HKKGHVERFCRKFKKYFEKGINTANVVTEEDQ--------VEEFKACVQRNI-----SVDQWIVDTTASAYVVSNKRCFSSFTAG-----KLDDDGFSSE

Query:  FVRG
          +G
Subjt:  FVRG

RVW14266.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.4e-0830.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

RVW42505.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.4e-0830.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

RVW84195.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.4e-0830.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

RVW94144.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.2e-0830.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+ +GK     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

TrEMBL top hitse value%identityAlignment
A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-0930.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

A0A438E432 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-0930.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-0930.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-0830.43Show/hide
Query:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF
        T+SN   D  +  S +    L+EE  +K          + +    ALV++N+ +GK     K  H  +   G SS     +VECYYCHKKGH++R CRK 
Subjt:  TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKF

Query:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV
        K       K  EK  N   VVT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    +E V
Subjt:  K-------KYFEKGINTANVVTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFV

A0A6A6L287 Uncharacterized protein1.3e-0726.47Show/hide
Query:  VEGLARQLRDDETTMS----NLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGEVECYYC
        V G  +Q  +D  T+     N   +  +    +    ++EE        + S   A +     LV+  +G+ +      +    + G  +    VEC+YC
Subjt:  VEGLARQLRDDETTMS----NLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGEVECYYC

Query:  HKKGHVERFCRKFKKYFEKGINTANVVTEEDQ--------VEEFKACVQRNI-----SVDQWIVDTTASAYVVSNKRCFSSFTAG-----KLDDDGFSSE
         KKGH+++FCRKFKK  ++G N    V +ED         V+EF      +I         W++D+ A+ YV S K  FS +T G     K+ +D  S  
Subjt:  HKKGHVERFCRKFKKYFEKGINTANVVTEEDQ--------VEEFKACVQRNI-----SVDQWIVDTTASAYVVSNKRCFSSFTAG-----KLDDDGFSSE

Query:  FVRG
          +G
Subjt:  FVRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAACATGGAAAACACACTATGTTCGGAAAATGCACCAGGTGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGGTGTTGCAGA
GGCTAGGGTAACCTACAATCATATGCTTATGTGTGATTACAATCCTAGAGAATATCTACCAACTCATTTGCATTATAGGTGCTACCGCAAGCACGATCCCGAGACCCAAG
AGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGGCATGAACATGCAAAGTGGCGAGGAGCCACTCACCAAAAAAAGTAC
AAGGAAAAGCATGCGCTTCTTGTCTGCCCAGTTTTTCATGTATTTAGACGTCTTTTTGGGGTACGTCCCTACTTCAGTAGACTACCACCATTCTTTGGTGAAGTTGTAAG
CTTGAGGACTCTTCCCTACATAGGGGTGGTCGATAACATTAGGCAACACAGGACCGTTAATTTCCCAACAAGTGGTATCAAAGCTATAGGGTTGCAGATCATGGGAGACA
TATATCAAGTACACCATTACTATGAAGGGGTTCTAAAGTTCAGTGGAGAGACTTTCAGTTTTTTGAAGATGCAGGAAAAGGATCTTCTTAAGTACCATTGCGAATATCAA
AATGTCATTATCGATGGGGGTATGCTGTTTGCTGGCGATAGGGACTATAACGAAGGAACTGTTGAAGGCCTTGCAAGACAGCTGAGAGACGATGAAACCACAATGTCGAA
TTTGTTAGGTGATAATAGCTTGAAATTTTCAACTATATGTGATGATGCCTTATCTGAGGAAGCCTGGAAAAAATTAGGGGAAATGTATGCATCTACTCCAGGGGCAGAGA
ACAAGATTGAATCAGCTTTGGTAGTGCAGAACAAGGGGAAGGGCAAGATGAACTGCATGGGGAAGCAGCAGCATAGATATAACGGGGGTAGTGGAAGTTCCAGTGGAGAA
GTGGAGTGTTATTACTGCCATAAGAAGGGACACGTTGAACGCTTTTGTAGGAAGTTCAAAAAATATTTTGAGAAGGGGATCAATACTGCAAATGTTGTAACAGAAGAAGA
TCAGGTTGAAGAGTTTAAAGCTTGTGTTCAGAGGAACATATCTGTAGATCAGTGGATAGTGGACACTACAGCATCAGCGTATGTTGTTTCAAACAAACGTTGCTTTTCAT
CTTTTACTGCAGGAAAGCTAGACGACGATGGCTTTAGTAGTGAGTTTGTTAGGGGTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAACATGGAAAACACACTATGTTCGGAAAATGCACCAGGTGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGGTGTTGCAGA
GGCTAGGGTAACCTACAATCATATGCTTATGTGTGATTACAATCCTAGAGAATATCTACCAACTCATTTGCATTATAGGTGCTACCGCAAGCACGATCCCGAGACCCAAG
AGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGGCATGAACATGCAAAGTGGCGAGGAGCCACTCACCAAAAAAAGTAC
AAGGAAAAGCATGCGCTTCTTGTCTGCCCAGTTTTTCATGTATTTAGACGTCTTTTTGGGGTACGTCCCTACTTCAGTAGACTACCACCATTCTTTGGTGAAGTTGTAAG
CTTGAGGACTCTTCCCTACATAGGGGTGGTCGATAACATTAGGCAACACAGGACCGTTAATTTCCCAACAAGTGGTATCAAAGCTATAGGGTTGCAGATCATGGGAGACA
TATATCAAGTACACCATTACTATGAAGGGGTTCTAAAGTTCAGTGGAGAGACTTTCAGTTTTTTGAAGATGCAGGAAAAGGATCTTCTTAAGTACCATTGCGAATATCAA
AATGTCATTATCGATGGGGGTATGCTGTTTGCTGGCGATAGGGACTATAACGAAGGAACTGTTGAAGGCCTTGCAAGACAGCTGAGAGACGATGAAACCACAATGTCGAA
TTTGTTAGGTGATAATAGCTTGAAATTTTCAACTATATGTGATGATGCCTTATCTGAGGAAGCCTGGAAAAAATTAGGGGAAATGTATGCATCTACTCCAGGGGCAGAGA
ACAAGATTGAATCAGCTTTGGTAGTGCAGAACAAGGGGAAGGGCAAGATGAACTGCATGGGGAAGCAGCAGCATAGATATAACGGGGGTAGTGGAAGTTCCAGTGGAGAA
GTGGAGTGTTATTACTGCCATAAGAAGGGACACGTTGAACGCTTTTGTAGGAAGTTCAAAAAATATTTTGAGAAGGGGATCAATACTGCAAATGTTGTAACAGAAGAAGA
TCAGGTTGAAGAGTTTAAAGCTTGTGTTCAGAGGAACATATCTGTAGATCAGTGGATAGTGGACACTACAGCATCAGCGTATGTTGTTTCAAACAAACGTTGCTTTTCAT
CTTTTACTGCAGGAAAGCTAGACGACGATGGCTTTAGTAGTGAGTTTGTTAGGGGTTACTGA
Protein sequenceShow/hide protein sequence
MQNMENTLCSENAPGAIPDFSWDLSSTLSLPLLGVAEARVTYNHMLMCDYNPREYLPTHLHYRCYRKHDPETQEDSEEDVVVVFVGNRRRKVLQRHEHAKWRGATHQKKY
KEKHALLVCPVFHVFRRLFGVRPYFSRLPPFFGEVVSLRTLPYIGVVDNIRQHRTVNFPTSGIKAIGLQIMGDIYQVHHYYEGVLKFSGETFSFLKMQEKDLLKYHCEYQ
NVIIDGGMLFAGDRDYNEGTVEGLARQLRDDETTMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGE
VECYYCHKKGHVERFCRKFKKYFEKGINTANVVTEEDQVEEFKACVQRNISVDQWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFVRGY