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Moc09g15610 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g15610
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:13056489..13057153
RNA-Seq ExpressionMoc09g15610
SyntenyMoc09g15610
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER39086.1 ribosomal protein S12 [Striga asiatica]4.3e-1783.33Show/hide
Query:  PAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        P REEACLKCT+      CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  PAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

KAF7141076.1 hypothetical protein RHSIM_Rhsim06G0084200 [Rhododendron simsii]2.6e-1440.98Show/hide
Query:  DLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCG---------------------TTTPAREEACLKCTWMPSRAECAFIDVV-DWRQPYI
        +LK FT   G L Y+ S G+LARC+G E+A  +++EVH++ CG                     T   A +  C KC  +PS+ EC FI+V  DWR+PYI
Subjt:  DLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCG---------------------TTTPAREEACLKCTWMPSRAECAFIDVV-DWRQPYI

Query:  EYLTKGTLPDDRYEANKLKKIA
        ++LT+GTLP DR +    KK A
Subjt:  EYLTKGTLPDDRYEANKLKKIA

KAG5552838.1 hypothetical protein RHGRI_010819 [Rhododendron griersonianum]8.9e-1544.17Show/hide
Query:  DLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGT-------------------TTPARE--EACLKCTWMPSRAECAFIDVV-DWRQPYI
        +LK FT   G L Y+ S G+LARC+G EEA  +++EVH++ CGT                    T A E    C KC  +PS+AEC FI V  DWR+PYI
Subjt:  DLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGT-------------------TTPARE--EACLKCTWMPSRAECAFIDVV-DWRQPYI

Query:  EYLTKGTLPDDRYEANKLKK
        ++LT GTLP DR +   +KK
Subjt:  EYLTKGTLPDDRYEANKLKK

KAG5562371.1 hypothetical protein RHGRI_005194 [Rhododendron griersonianum]2.6e-1443.44Show/hide
Query:  DLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGT-------------------TTPARE--EACLKCTWMPSRAECAFIDVV-DWRQPYI
        +LK FT   G L Y+ S G+LARC+G EE   +++EVH++ CGT                    T A E    C KC  +PS+AEC FI V  DWR+PYI
Subjt:  DLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGT-------------------TTPARE--EACLKCTWMPSRAECAFIDVV-DWRQPYI

Query:  EYLTKGTLPDDRYEANKLKKIA
        ++LT GTLP DR +   +KK A
Subjt:  EYLTKGTLPDDRYEANKLKKIA

KJB09732.1 hypothetical protein B456_001G160800 [Gossypium raimondii]5.0e-2671.11Show/hide
Query:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTP----------------------AREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK
        MSDGVLARCLGVEEAAKRLEEVHDKVCGTT P                      AREEACLKCTWMP RAECAFI+VVDWRQPYIEYLT+
Subjt:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTP----------------------AREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK

TrEMBL top hitse value%identityAlignment
A0A0D2LZA6 Uncharacterized protein2.4e-2671.11Show/hide
Query:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTP----------------------AREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK
        MSDGVLARCLGVEEAAKRLEEVHDKVCGTT P                      AREEACLKCTWMP RAECAFI+VVDWRQPYIEYLT+
Subjt:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTP----------------------AREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTK

A0A2N9GY06 Ribonuclease H3.2e-1032.26Show/hide
Query:  KDLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCG----------------------TTTPAREEACLKCTWMPSRAE-CAFIDVVDWRQP
        + +K +T  CG+L  ++ +GVLARC+ +EEA +RL EVH+K CG                            +  C  C +  +  E CA     DWR P
Subjt:  KDLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCG----------------------TTTPAREEACLKCTWMPSRAE-CAFIDVVDWRQP

Query:  YIEYLTKGTLPDDRYEANKLKKIA
        ++EYL +G LP +  +  +LK++A
Subjt:  YIEYLTKGTLPDDRYEANKLKKIA

A0A2N9HL55 Ribonuclease H1.4e-1034.65Show/hide
Query:  KDLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKI
        +++K +T   G+L  ++ +GVL RC+ +EEA ++L EVH+K CG     +         +P+   CA     DWR P++EYL +G LP +  +  +LK++
Subjt:  KDLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKI

Query:  A
        A
Subjt:  A

A0A5A7Q2J0 Ribosomal protein S122.1e-1783.33Show/hide
Query:  PAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        P REEACLKCT+      CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  PAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

A0A7J0D7F1 Uncharacterized protein2.4e-1038.94Show/hide
Query:  GNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGT--------------TTPAREE-------ACLKCTWMPSRAECAFI-DVVDWRQPYIEYLTKGTLP
        G L Y+   G LARCLG EEA  RL ++H+K CG                 P  E        +C +C  +    EC F+ +V DWRQ YI+YL +G+LP
Subjt:  GNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGT--------------TTPAREE-------ACLKCTWMPSRAECAFI-DVVDWRQPYIEYLTKGTLP

Query:  DDRYEANKLKKIA
         DR +A ++KK A
Subjt:  DDRYEANKLKKIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGGAAAGACTTGAAATGCTTCACAAAATGTTGTGGCAATTTGGACTACAAGATGTCCGATGGGGTCTTAGCTCGGTGCCTTGGCGTTGAAGAAGCAGCAAAGAG
ACTTGAAGAAGTTCATGATAAGGTCTGTGGGACAACAACACCGGCTCGAGAAGAGGCTTGTCTAAAATGCACATGGATGCCCTCTCGAGCAGAATGTGCATTTATCGATG
TAGTGGATTGGAGACAGCCATATATCGAGTATCTGACAAAAGGAACCTTACCGGATGATAGATACGAAGCGAATAAGCTAAAGAAGATAGCCAACCTAAAGGTGATGAAG
CGATGGAGATCATGCACCAATCACATGCTGGCATCTTGGCGAGCACCAAGGAGGGCGAAAGCTGTTTCAGTATTTGCTGCAATCAGAAAAAAAAGGGAAATCCCGGCGGG
ACCCTTGTTCGCCGTTACTGGAAGGTACTCGACTCCTTCTAGAAAAGTCAGGCCGATCGCCTTGGCTAAAAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGGAAAGACTTGAAATGCTTCACAAAATGTTGTGGCAATTTGGACTACAAGATGTCCGATGGGGTCTTAGCTCGGTGCCTTGGCGTTGAAGAAGCAGCAAAGAG
ACTTGAAGAAGTTCATGATAAGGTCTGTGGGACAACAACACCGGCTCGAGAAGAGGCTTGTCTAAAATGCACATGGATGCCCTCTCGAGCAGAATGTGCATTTATCGATG
TAGTGGATTGGAGACAGCCATATATCGAGTATCTGACAAAAGGAACCTTACCGGATGATAGATACGAAGCGAATAAGCTAAAGAAGATAGCCAACCTAAAGGTGATGAAG
CGATGGAGATCATGCACCAATCACATGCTGGCATCTTGGCGAGCACCAAGGAGGGCGAAAGCTGTTTCAGTATTTGCTGCAATCAGAAAAAAAAGGGAAATCCCGGCGGG
ACCCTTGTTCGCCGTTACTGGAAGGTACTCGACTCCTTCTAGAAAAGTCAGGCCGATCGCCTTGGCTAAAAAAGAATGA
Protein sequenceShow/hide protein sequence
MARKDLKCFTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPAREEACLKCTWMPSRAECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIANLKVMK
RWRSCTNHMLASWRAPRRAKAVSVFAAIRKKREIPAGPLFAVTGRYSTPSRKVRPIALAKKE