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Moc09g15860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g15860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr9:13127866..13136621
RNA-Seq ExpressionMoc09g15860
SyntenyMoc09g15860
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0050896 - response to stimulus (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045281 - succinate dehydrogenase complex (cellular component)
GO:0000104 - succinate dehydrogenase activity (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS28528.1 hypothetical protein Acr_00g0002340 [Actinidia rufa]8.2e-4389.81Show/hide
Query:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA
        PA LREKLSPR PL+SFLDMLSP APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRR   V+Q 
Subjt:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA

Query:  RTTPEDQQ
        +TTPED Q
Subjt:  RTTPEDQQ

GFY81748.1 hypothetical protein Acr_01g0015560 [Actinidia rufa]8.2e-4389.81Show/hide
Query:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA
        PA LREKLSPR PL+SFLDMLSP APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRR   V+Q 
Subjt:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA

Query:  RTTPEDQQ
        +TTPED Q
Subjt:  RTTPEDQQ

GFY90575.1 hypothetical protein Acr_07g0007720 [Actinidia rufa]3.0e-4560.94Show/hide
Query:  GAYALYSLPLNDEAKKERKEGLEP---------------------------------STSALARL-----------CSTIKLFPPATLREKLSPRPPLVS
        GAYAL+SLPLNDEA+  R++ L P                                 S+S  +R            C    +  PA LREKLSPR PL+S
Subjt:  GAYALYSLPLNDEAKKERKEGLEP---------------------------------STSALARL-----------CSTIKLFPPATLREKLSPRPPLVS

Query:  FLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQ
        FLDMLSP APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRR   V+Q +TTPED Q
Subjt:  FLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQ

PPS06319.1 hypothetical protein GOBAR_AA14324 [Gossypium barbadense]4.5e-3371.05Show/hide
Query:  PLVSFLDMLSPAPGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVA
        PL   L      P ENGDGDV RPSPVHQLEPHSS VDVTDQPHSSGQQ C A  ADCQ +QLTSEDS+HPAQH  S R+ HYV+Q + TPEDQQ  PV+
Subjt:  PLVSFLDMLSPAPGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVA

Query:  SLPVASSDSGSLSQ
         LP ASSDSGSLSQ
Subjt:  SLPVASSDSGSLSQ

YP_009045815.1 orf221 [Batis maritima]1.6e-3074.77Show/hide
Query:  FLDMLS-PAPGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVASLP
        FL++++ P    NGDGDVLRPSPVH    HSSAVDVTDQPHSSGQQ C ASSADCQPVQLTSEDSSHPAQH+SSRRR H V+Q +TTPEDQQS      P
Subjt:  FLDMLS-PAPGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVASLP

Query:  VASSDSGSLSQ
        VASSDS SLSQ
Subjt:  VASSDSGSLSQ

TrEMBL top hitse value%identityAlignment
A0A2N9FRH9 Reverse transcriptase Ty1/copia-type domain-containing protein1.8e-4393.14Show/hide
Query:  PGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVASLPVASSDSGSL
        PGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLC ASSADCQPVQLTSEDSSHPAQH+ SRRR HYV+QA+TTPEDQQS PVASLPVASSDSGSL
Subjt:  PGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVASLPVASSDSGSL

Query:  SQ
        SQ
Subjt:  SQ

A0A2N9GIJ9 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-5848.01Show/hide
Query:  HHPSPITFHIPLQTFRFLGGTPLFYFEKGIPASKAGEPGRAFKTEMHYSIWKELSLVEKEKNTLFKGQVR----GREKGFFCFTTGIRNLRMNPTCRSKN
        HH S  T H  L    F     L Y  KGIPAS+A   GRAFKTEMHYSIWK LSLV KEKN LFK + R      +K  F     ++ L  +  C   +
Subjt:  HHPSPITFHIPLQTFRFLGGTPLFYFEKGIPASKAGEPGRAFKTEMHYSIWKELSLVEKEKNTLFKGQVR----GREKGFFCFTTGIRNLRMNPTCRSKN

Query:  GIGEDHLREDQKDF--YGMSYSCPSFPINQSPNFRGISFLGSGIPSLVGGFGSKVRKCMWCGFISLDQFRGCLQLAPISKGAYALYSLPLNDEAKKERKE
            D  R  ++D       +   + P++     R +  L + I +      S+V   +   FI +         AP  + +Y+L S         +R+ 
Subjt:  GIGEDHLREDQKDF--YGMSYSCPSFPINQSPNFRGISFLGSGIPSLVGGFGSKVRKCMWCGFISLDQFRGCLQLAPISKGAYALYSLPLNDEAKKERKE

Query:  GLEPSTSALARLC------STIKLFPPATLREKLSPRPPLVSFLDMLSPAPGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQ
             +  L RL       S+    PP T R       PL   L      PGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLC ASSADCQPVQ
Subjt:  GLEPSTSALARLC------STIKLFPPATLREKLSPRPPLVSFLDMLSPAPGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQ

Query:  LTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVASLPVASSDSGSLSQ
        LTSEDSSHPAQH+ SRRR HYV+QA+TTPEDQQS PVASLPVASSDSGSLSQ
Subjt:  LTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSGPVASLPVASSDSGSLSQ

A0A7J0E5P9 Uncharacterized protein3.9e-4389.81Show/hide
Query:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA
        PA LREKLSPR PL+SFLDMLSP APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRR   V+Q 
Subjt:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA

Query:  RTTPEDQQ
        +TTPED Q
Subjt:  RTTPEDQQ

A0A7J0E729 Uncharacterized protein3.9e-4389.81Show/hide
Query:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA
        PA LREKLSPR PL+SFLDMLSP APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRR   V+Q 
Subjt:  PATLREKLSPRPPLVSFLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQA

Query:  RTTPEDQQ
        +TTPED Q
Subjt:  RTTPEDQQ

A0A7J0EVU5 Uncharacterized protein1.5e-4560.94Show/hide
Query:  GAYALYSLPLNDEAKKERKEGLEP---------------------------------STSALARL-----------CSTIKLFPPATLREKLSPRPPLVS
        GAYAL+SLPLNDEA+  R++ L P                                 S+S  +R            C    +  PA LREKLSPR PL+S
Subjt:  GAYALYSLPLNDEAKKERKEGLEP---------------------------------STSALARL-----------CSTIKLFPPATLREKLSPRPPLVS

Query:  FLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQ
        FLDMLSP APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRR   V+Q +TTPED Q
Subjt:  FLDMLSP-APGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGGATTTCATAACCACCATCCATCACCAATCACATTCCACATCCCACTTCAAACTTTTCGATTCCTCGGGGGGACTCCTCTATTCTATTTCGAGAAAGGCAT
TCCAGCTTCAAAGGCAGGTGAGCCGGGGCGGGCTTTCAAGACAGAGATGCACTACTCCATCTGGAAAGAGCTTTCCCTCGTGGAGAAAGAGAAGAACACCTTATTTAAAG
GACAGGTCAGGGGCAGGGAGAAGGGCTTCTTCTGCTTTACAACCGGAATAAGGAACCTTAGAATGAACCCTACCTGTCGATCAAAAAATGGGATTGGAGAGGACCACCTG
CGGGAGGATCAGAAAGATTTTTATGGAATGTCCTACTCCTGCCCGAGCTTTCCGATCAACCAATCCCCTAATTTCAGGGGCATCTCTTTCTTAGGTTCTGGAATTCCATC
TCTAGTTGGGGGTTTCGGTTCGAAGGTTAGAAAATGTATGTGGTGCGGGTTCATCTCTCTCGACCAGTTCAGGGGCTGCTTGCAGCTCGCCCCTATTTCTAAGGGGGCTT
ATGCACTCTACTCGTTACCACTAAACGACGAAGCCAAGAAAGAGCGGAAGGAGGGACTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTAAGCTATTT
CCGCCAGCTACGTTAAGAGAAAAATTGTCCCCAAGGCCACCGCTTGTTTCTTTCTTGGATATGCTCAGTCCGGCCCCGGGGGAGAATGGTGATGGAGATGTATTGCGGCC
TTCTCCTGTTCATCAACTCGAACCTCATTCTTCTGCAGTTGATGTTACGGATCAGCCCCACTCTTCAGGCCAGCAGCTTTGCTCAGCATCTTCTGCCGATTGTCAGCCTG
TTCAGTTGACCTCAGAGGATTCCAGTCACCCGGCACAGCATCTTTCTTCTCGGCGGCGAAACCATTATGTTGCCCAGGCTAGGACTACTCCAGAAGATCAGCAGTCGGGA
CCAGTTGCTTCCCTTCCAGTCGCTTCCTCAGATTCTGGATCCCTCTCTCAGGAGTGGAAACGTCTGAGAGAGCGCTTCGCGAAAGAATCGTGTGGCGCGGTGAAAGGTTT
CCCGTTGGGGTTTCCGGCCCCCCTCCCCTGGTCTTCACCTAATTGTGGAAGAGGGGAGGCAGCCCACATACATGAAGAGAAGAAGAGAGGGGGGTTCCTTGATATTAAGG
CGTCAAGGCGGTCGAAGAAGGCCACAAGTGGAAGCAACCGATGCTTTGGTCATTCAGTTGACTCCTTGCTGCCAGTCTGTGCTTGCTGTCATGCTGGCAAAAGCAGGGGT
TTCGGCCGCTTACTCTGCTACAGCGGACCGTTAGGTTCGCAGGGTGCCGCGGTTTGTGGGCTTGAAGGACTTAGCGCCATGACAAGTGGTATCAGAGCCAAAGGTTCGGC
CAAGCCATGGCTAGTGGGAAAAAAAAACCGTAGGCTAGTGTCGTCGAAGAGGCTCGACGGGAGCAGACTCGTAATCGTGTGGACGCCTTGTTACACAACTGAAGGGACAG
ATTTCGAGCGAGCGGGTTGCTTCTCCGGAGAAAGATGGGCTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGAACGGATTTCATAACCACCATCCATCACCAATCACATTCCACATCCCACTTCAAACTTTTCGATTCCTCGGGGGGACTCCTCTATTCTATTTCGAGAAAGGCAT
TCCAGCTTCAAAGGCAGGTGAGCCGGGGCGGGCTTTCAAGACAGAGATGCACTACTCCATCTGGAAAGAGCTTTCCCTCGTGGAGAAAGAGAAGAACACCTTATTTAAAG
GACAGGTCAGGGGCAGGGAGAAGGGCTTCTTCTGCTTTACAACCGGAATAAGGAACCTTAGAATGAACCCTACCTGTCGATCAAAAAATGGGATTGGAGAGGACCACCTG
CGGGAGGATCAGAAAGATTTTTATGGAATGTCCTACTCCTGCCCGAGCTTTCCGATCAACCAATCCCCTAATTTCAGGGGCATCTCTTTCTTAGGTTCTGGAATTCCATC
TCTAGTTGGGGGTTTCGGTTCGAAGGTTAGAAAATGTATGTGGTGCGGGTTCATCTCTCTCGACCAGTTCAGGGGCTGCTTGCAGCTCGCCCCTATTTCTAAGGGGGCTT
ATGCACTCTACTCGTTACCACTAAACGACGAAGCCAAGAAAGAGCGGAAGGAGGGACTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTAAGCTATTT
CCGCCAGCTACGTTAAGAGAAAAATTGTCCCCAAGGCCACCGCTTGTTTCTTTCTTGGATATGCTCAGTCCGGCCCCGGGGGAGAATGGTGATGGAGATGTATTGCGGCC
TTCTCCTGTTCATCAACTCGAACCTCATTCTTCTGCAGTTGATGTTACGGATCAGCCCCACTCTTCAGGCCAGCAGCTTTGCTCAGCATCTTCTGCCGATTGTCAGCCTG
TTCAGTTGACCTCAGAGGATTCCAGTCACCCGGCACAGCATCTTTCTTCTCGGCGGCGAAACCATTATGTTGCCCAGGCTAGGACTACTCCAGAAGATCAGCAGTCGGGA
CCAGTTGCTTCCCTTCCAGTCGCTTCCTCAGATTCTGGATCCCTCTCTCAGGAGTGGAAACGTCTGAGAGAGCGCTTCGCGAAAGAATCGTGTGGCGCGGTGAAAGGTTT
CCCGTTGGGGTTTCCGGCCCCCCTCCCCTGGTCTTCACCTAATTGTGGAAGAGGGGAGGCAGCCCACATACATGAAGAGAAGAAGAGAGGGGGGTTCCTTGATATTAAGG
CGTCAAGGCGGTCGAAGAAGGCCACAAGTGGAAGCAACCGATGCTTTGGTCATTCAGTTGACTCCTTGCTGCCAGTCTGTGCTTGCTGTCATGCTGGCAAAAGCAGGGGT
TTCGGCCGCTTACTCTGCTACAGCGGACCGTTAGGTTCGCAGGGTGCCGCGGTTTGTGGGCTTGAAGGACTTAGCGCCATGACAAGTGGTATCAGAGCCAAAGGTTCGGC
CAAGCCATGGCTAGTGGGAAAAAAAAACCGTAGGCTAGTGTCGTCGAAGAGGCTCGACGGGAGCAGACTCGTAATCGTGTGGACGCCTTGTTACACAACTGAAGGGACAG
ATTTCGAGCGAGCGGGTTGCTTCTCCGGAGAAAGATGGGCTGGTTAG
Protein sequenceShow/hide protein sequence
MQNGFHNHHPSPITFHIPLQTFRFLGGTPLFYFEKGIPASKAGEPGRAFKTEMHYSIWKELSLVEKEKNTLFKGQVRGREKGFFCFTTGIRNLRMNPTCRSKNGIGEDHL
REDQKDFYGMSYSCPSFPINQSPNFRGISFLGSGIPSLVGGFGSKVRKCMWCGFISLDQFRGCLQLAPISKGAYALYSLPLNDEAKKERKEGLEPSTSALARLCSTIKLF
PPATLREKLSPRPPLVSFLDMLSPAPGENGDGDVLRPSPVHQLEPHSSAVDVTDQPHSSGQQLCSASSADCQPVQLTSEDSSHPAQHLSSRRRNHYVAQARTTPEDQQSG
PVASLPVASSDSGSLSQEWKRLRERFAKESCGAVKGFPLGFPAPLPWSSPNCGRGEAAHIHEEKKRGGFLDIKASRRSKKATSGSNRCFGHSVDSLLPVCACCHAGKSRG
FGRLLCYSGPLGSQGAAVCGLEGLSAMTSGIRAKGSAKPWLVGKKNRRLVSSKRLDGSRLVIVWTPCYTTEGTDFERAGCFSGERWAG