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Moc09g15890 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g15890
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr9:13144319..13144837
RNA-Seq ExpressionMoc09g15890
SyntenyMoc09g15890
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3449792.1 hypothetical protein FNV43_RR05870 [Rhamnella rubrinervis]1.3e-3676.11Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV
        MNENVTELV VTLR+G+EEG+RF+NEE+D +TSKELNEEPYE+KIS                  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV

Query:  GVKDRQQGRSSAL
        GVKDRQQGRSSAL
Subjt:  GVKDRQQGRSSAL

KAF6139964.1 hypothetical protein GIB67_011674, partial [Kingdonia uniflora]1.7e-4469.08Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEP-------------------------------YEVK--ISCIGHNLQEHSVVLVRGGRVKDL
        +ENVTELV VTL DG+EEGRRFSNEEKD +TSKELN+EP                               +E+   I  IGHN QEHSVVLVRGGRVKDL
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEP-------------------------------YEVK--ISCIGHNLQEHSVVLVRGGRVKDL

Query:  PGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCEVYG
        PGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMM CESLETCEVYG
Subjt:  PGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCEVYG

RWR98291.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]2.4e-3565.22Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-------------------------------------------IGHNLQEHSVV
        +ENVTELV VTLRDG+EEGRRFSNEEKD ITSKELNEEPYEVKISC                                           IGHN QEHSVV
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-------------------------------------------IGHNLQEHSVV

Query:  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]5.2e-3865.73Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------------------------------------IGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKD +TSKELNEEPYEVKISC                                               IGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------------------------------------IGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.1e-3563.64Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKIS-----------------------------------------------CIGHNLQ
        MNENVT+LVPVTLRDGMEEGRRFSNEEKD +TSKELNEEPYEVKIS                                                IGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKIS-----------------------------------------------CIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHS VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic1.5e-3564.75Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC--------------------------------------------IGHNLQEHSV
        +ENVTELV VTLRDG+EEGRRFSNEEKD ITSKELNEEPYEVKISC                                            IGHN QEHSV
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC--------------------------------------------IGHNLQEHSV

Query:  VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A3S3PCQ6 30S ribosomal protein S12, chloroplastic1.2e-3565.22Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-------------------------------------------IGHNLQEHSVV
        +ENVTELV VTLRDG+EEGRRFSNEEKD ITSKELNEEPYEVKISC                                           IGHN QEHSVV
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-------------------------------------------IGHNLQEHSVV

Query:  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6J1F0L1 uncharacterized protein LOC1114383942.5e-3865.73Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------------------------------------IGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKD +TSKELNEEPYEVKISC                                               IGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------------------------------------IGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A7J7LBS2 Uncharacterized protein8.1e-4569.08Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEP-------------------------------YEVK--ISCIGHNLQEHSVVLVRGGRVKDL
        +ENVTELV VTL DG+EEGRRFSNEEKD +TSKELN+EP                               +E+   I  IGHN QEHSVVLVRGGRVKDL
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEP-------------------------------YEVK--ISCIGHNLQEHSVVLVRGGRVKDL

Query:  PGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCEVYG
        PGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMM CESLETCEVYG
Subjt:  PGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCEVYG

A0A7N2N888 Uncharacterized protein3.7e-3778.76Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV
        MNENVTE V VTLR G+EEGRRFSNEEKD  TSKELNEEPYEVKIS                  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-----------------IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV

Query:  GVKDRQQGRSSAL
        GVKDRQQGRSSAL
Subjt:  GVKDRQQGRSSAL

SwissProt top hitse value%identityAlignment
A4QJV5 30S ribosomal protein S12-A, chloroplastic1.1e-19100Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

A4QJX7 30S ribosomal protein S12-B, chloroplastic1.1e-19100Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic1.8e-2097.96Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic1.8e-2097.96Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic1.8e-2097.96Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.5e-1162.22Show/hide
Query:  GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00065.1 ribosomal protein S12A8.1e-21100Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00905.1 ribosomal protein S12C8.1e-21100Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG01230.1 ribosomal protein S12B8.1e-21100Show/hide
Query:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein1.5e-1162.22Show/hide
Query:  GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGTCCCAGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCAAATTACTTCGAAAGAATTGAA
CGAGGAACCGTATGAGGTGAAAATCTCATGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATC
ACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGT
GAATCGCTAGAAACATGTGAAGTGTATGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGTCCCAGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCAAATTACTTCGAAAGAATTGAA
CGAGGAACCGTATGAGGTGAAAATCTCATGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATC
ACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGT
GAATCGCTAGAAACATGTGAAGTGTATGGCTAA
Protein sequenceShow/hide protein sequence
MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISCIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPC
ESLETCEVYG