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Moc09g15980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g15980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNA-dependent RNA polymerase
Genome locationchr9:13175439..13176113
RNA-Seq ExpressionMoc09g15980
SyntenyMoc09g15980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1199680.1 hypothetical protein CJ030_MR0G017069 [Morella rubra]3.4e-1358.02Show/hide
Query:  ERVRDFLEWSLLRNWMKDWLRME-----------------------------RRESSELIRFGLLWKIYDLVAEKGVAWSP
        ERVRDFLEWSLLRNWMKDWLR                               RRESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVRDFLEWSLLRNWMKDWLRME-----------------------------RRESSELIRFGLLWKIYDLVAEKGVAWSP

KAB8477474.1 hypothetical protein FH972_025340 [Carpinus fangiana]1.1e-2238.34Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL-
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL 
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL-

Query:  -----------------------------RMERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT
                                     R+ER++++ L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  -----------------------------RMERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT

KAF3452148.1 hypothetical protein FNV43_RR08246 [Rhamnella rubrinervis]1.7e-4967.92Show/hide
Query:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVR-----------DFLEWSLLRNWMKDWLRME-----------------------------R
        RVLAKLSHTRSRHFERVLAMYTKPRGHND  LELWL RV             FLEWSLLRNWMKDWLR                               R
Subjt:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVR-----------DFLEWSLLRNWMKDWLRME-----------------------------R

Query:  RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLT
        RESSELIRF LLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLL GVSG+DFLVEPDG T
Subjt:  RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLT

KAF9601036.1 hypothetical protein IFM89_015021 [Coptis chinensis]6.1e-1029.53Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP-RGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL
        IGGGGY+ L KL   RSR  +R+ +M  K   GH    L LWL                                     E+V+   E++ LR WMK+WL
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP-RGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL

Query:  RMER-----------------------------RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG--WLLEGVSGIDFLVEPDGL
           R                             R+   LI+FGLLW+++DLV + G+ + PP L+      +   WLL G+ G  +LV  DGL
Subjt:  RMER-----------------------------RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG--WLLEGVSGIDFLVEPDGL

KAF9618544.1 hypothetical protein IFM89_002239 [Coptis chinensis]2.9e-1264.29Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPR-GHNDETLELWLERVRDFLEWSLLRNWMKDWLRMERRES
        IGGGGYRVLAKL HTRSRHFERVLAMYTKPR GHND  LELWL +V     +  LR ++  +L  E + S
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPR-GHNDETLELWLERVRDFLEWSLLRNWMKDWLRMERRES

TrEMBL top hitse value%identityAlignment
A0A2Z6JSN1 RNA-dependent RNA polymerase3.6e-0833.94Show/hide
Query:  RDFLEWSLLRNWMKDWLRM------------------------------ERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI
        ++F E +L+ NW+K WL+                                R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG 
Subjt:  RDFLEWSLLRNWMKDWLRM------------------------------ERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI

Query:  DFLVEPDGL
        DF+V   GL
Subjt:  DFLVEPDGL

A0A482F2N2 RNA-dependent RNA polymerase3.6e-0833.94Show/hide
Query:  RDFLEWSLLRNWMKDWLRM------------------------------ERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI
        ++F E +L+ NW+K WL+                                R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG 
Subjt:  RDFLEWSLLRNWMKDWLRM------------------------------ERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGI

Query:  DFLVEPDGL
        DF+V   GL
Subjt:  DFLVEPDGL

A0A5N6L0Z4 Uncharacterized protein5.2e-2338.34Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL-
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL 
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWL-

Query:  -----------------------------RMERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT
                                     R+ER++++ L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  -----------------------------RMERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT

A0A6A1UKL6 Uncharacterized protein1.7e-1358.02Show/hide
Query:  ERVRDFLEWSLLRNWMKDWLRME-----------------------------RRESSELIRFGLLWKIYDLVAEKGVAWSP
        ERVRDFLEWSLLRNWMKDWLR                               RRESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVRDFLEWSLLRNWMKDWLRME-----------------------------RRESSELIRFGLLWKIYDLVAEKGVAWSP

A0A6V7PYJ7 Uncharacterized protein9.5e-0931.45Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP---------RGH--------------------------NDETLELWLERVRDFLEWSLLRNWMKDWLRME
        +GG G+R +A+L H+RS + +RVLA+YT+          RG                            D+  E  +E ++DFLEWS+LR+W++ WLR  
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP---------RGH--------------------------NDETLELWLERVRDFLEWSLLRNWMKDWLRME

Query:  RRESS-----------------------------ELIRFGLLWKIYDLVAEKGVAWSPP
        +  SS                             +LI FGLLWK+YDLVA KG+ +  P
Subjt:  RRESS-----------------------------ELIRFGLLWKIYDLVAEKGVAWSPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGAAAGAGTCCGGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGAATGGAGAGACGCGAATCGAGTGAGCTCA
TTCGCTTTGGTCTTCTCTGGAAGATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTA
GAAGGAGTCTCCGGCATTGATTTCTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGCACCTGGGGGAAGGACTACCCTTTTTTT
AATATATGCAATTAATAAACGATACCGAATTAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGAAAGAGTCCGGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGAATGGAGAGACGCGAATCGAGTGAGCTCA
TTCGCTTTGGTCTTCTCTGGAAGATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTA
GAAGGAGTCTCCGGCATTGATTTCTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGCACCTGGGGGAAGGACTACCCTTTTTTT
AATATATGCAATTAATAAACGATACCGAATTAACTGA
Protein sequenceShow/hide protein sequence
MIGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVRDFLEWSLLRNWMKDWLRMERRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLL
EGVSGIDFLVEPDGLTGFERDHHKTLGAPGGRTTLFLIYAINKRYRIN