; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g17730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g17730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:14048477..14061646
RNA-Seq ExpressionMoc09g17730
SyntenyMoc09g17730
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-2867.96Show/hide
Query:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA
        +  EAT+ STRVVD+ G ++R VDE +TS Q HP Q LR+PRRSGR+VSQP+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLEMES+  
Subjt:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA

Query:  NGL
        N +
Subjt:  NGL

KAA0065386.1 gag/pol protein [Cucumis melo var. makuwa]9.6e-2966.97Show/hide
Query:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE
        K+V+N    EATN STRVVD+ G ++R VDE +TS Q HP Q+LR+PR SGRIVS+P+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLE
Subjt:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE

Query:  MESIIANGL
        MES+  N +
Subjt:  MESIIANGL

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-2867.96Show/hide
Query:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA
        +  EAT+ STRVVD+ G ++R VDE +TS Q HP Q LR+PRRSGR+VSQP+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLEMES+  
Subjt:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA

Query:  NGL
        N +
Subjt:  NGL

TYK20422.1 gag/pol protein [Cucumis melo var. makuwa]7.4e-2968.81Show/hide
Query:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE
        K+V+N    EAT+ STRVVD+ G ++R VDE +TS Q HP Q LR+PRRSGRIVSQP+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLE
Subjt:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE

Query:  MESIIANGL
        MES+  N L
Subjt:  MESIIANGL

TYK28868.1 gag/pol protein [Cucumis melo var. makuwa]9.6e-2966.97Show/hide
Query:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE
        K+V+N    EATN STRVVD+ G ++R VDE +TS Q HP Q+LR+PR SGRIVS+P+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLE
Subjt:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE

Query:  MESIIANGL
        MES+  N +
Subjt:  MESIIANGL

TrEMBL top hitse value%identityAlignment
A0A5A7TZD0 Gag/pol protein1.0e-2867.96Show/hide
Query:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA
        +  EAT+ STRVVD+ G ++R VDE +TS Q HP Q LR+PRRSGR+VSQP+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLEMES+  
Subjt:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA

Query:  NGL
        N +
Subjt:  NGL

A0A5A7VGC7 Gag/pol protein4.7e-2966.97Show/hide
Query:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE
        K+V+N    EATN STRVVD+ G ++R VDE +TS Q HP Q+LR+PR SGRIVS+P+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLE
Subjt:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE

Query:  MESIIANGL
        MES+  N +
Subjt:  MESIIANGL

A0A5D3BUN8 Gag/pol protein1.0e-2867.96Show/hide
Query:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA
        +  EAT+ STRVVD+ G ++R VDE +TS Q HP Q LR+PRRSGR+VSQP+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLEMES+  
Subjt:  ISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA

Query:  NGL
        N +
Subjt:  NGL

A0A5D3DA25 Gag/pol protein3.6e-2968.81Show/hide
Query:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE
        K+V+N    EAT+ STRVVD+ G ++R VDE +TS Q HP Q LR+PRRSGRIVSQP+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLE
Subjt:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE

Query:  MESIIANGL
        MES+  N L
Subjt:  MESIIANGL

A0A5D3DZH9 Gag/pol protein4.7e-2966.97Show/hide
Query:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE
        K+V+N    EATN STRVVD+ G ++R VDE +TS Q HP Q+LR+PR SGRIVS+P+RY+ LTETQVVIPDDGVEDPL+YK+AM D+D D+WVKAMDLE
Subjt:  KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLE

Query:  MESIIANGL
        MES+  N +
Subjt:  MESIIANGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAGAGAAGGAAGCAAGGCTTGATGACTTTGGTGGAGAAGCTGCTGGAATTTATAGCTGTGCAGAATTGGTTAGTGGAACACTTTTTCTACACTTATGCATCGGT
TGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCACGCAGGCGCCTGGCGCCTCCTGAGCTAGCGCTGG
AGGCCAGGAAGGTAAAACCGCAAAATCCAATGAAGCCCTCAAGTTGTAGATATGTTGCACGACTTCTCGAACTTGATCTCGCAGCTGTTGGTTCTCCTCTCGGAGACGAC
GGATCTCCGATTAAGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAG
CACATCGCGTCAGTTGCATCCACCTCAAGTGTTAAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCGCTACGTGAGTTTAACTGAAACTCAAGTTGTCA
TACCTGATGACGGCGTCGAGGATCCATTGACCTATAAGAAGGCAATGGAAGATATTGACATGGACAAATGGGTCAAAGCAATGGACCTGGAAATGGAGTCGATCATAGCT
AATGGTCTTTCCGATCAAGCCTCCTCCTCGCCATCACCGTCCCAAGAGCTAGCTCGATACCTGCAAACTGGAGGGGAAAAGAGGGATGAGTACAACCACAATACTCAGAG
TGGGTCGATGCCGAGGAGGTCCGAGCTTTCAACTCCAAGTTTGAAGGACTTTGCGCTTGCTGTTTCGATGTCAAAAAGTGATGGAACGTCGGGACGCCATGAACTGAGGC
AAACATCGTCGGAACGCCATGACCCGCCGCTGCAGCACCGTCAAGTGCTCGGGCTGTCGCAAAATTCGTGGGTAGCCGCCGAAATTGCCGTGGGCTGGTGTTGGGCATCG
GGGTCGCGCGCTGTCGGGGGAGTGGGAGGAGTTGTGACGTGGGGAGTTACCCCACGTCACCCTTCTTCTTCCTCTCCAAGTGTTGAGAAGCAGAAGAAGAAGTGCGTTAC
AGAACAGAACCAAGGAAGAAACTCCCACAACTCTCTCTCTCAAAATTCTCTCAAACTCTCCCTCTCTTCTATCAAGGTCCACCTCGGCCCTACCGAGGAGACCGGGTTCG
CCCATTATAAAAAGGCTAAGTATGGGCGTCAAGATTCGACCTGGTCCGCCCTAGTGTTCAGGTCGGATCCGGAGATCGGGTTCGAGCTTGATTCGCGAAGAACCGTTGTG
CAAACTCTTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATCAAGAGAAGGAAGCAAGGCTTGATGACTTTGGTGGAGAAGCTGCTGGAATTTATAGCTGTGCAGAATTGGTTAGTGGAACACTTTTTCTACACTTATGCATCGGT
TGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCACGCAGGCGCCTGGCGCCTCCTGAGCTAGCGCTGG
AGGCCAGGAAGGTAAAACCGCAAAATCCAATGAAGCCCTCAAGTTGTAGATATGTTGCACGACTTCTCGAACTTGATCTCGCAGCTGTTGGTTCTCCTCTCGGAGACGAC
GGATCTCCGATTAAGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCCAG
CACATCGCGTCAGTTGCATCCACCTCAAGTGTTAAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCGCTACGTGAGTTTAACTGAAACTCAAGTTGTCA
TACCTGATGACGGCGTCGAGGATCCATTGACCTATAAGAAGGCAATGGAAGATATTGACATGGACAAATGGGTCAAAGCAATGGACCTGGAAATGGAGTCGATCATAGCT
AATGGTCTTTCCGATCAAGCCTCCTCCTCGCCATCACCGTCCCAAGAGCTAGCTCGATACCTGCAAACTGGAGGGGAAAAGAGGGATGAGTACAACCACAATACTCAGAG
TGGGTCGATGCCGAGGAGGTCCGAGCTTTCAACTCCAAGTTTGAAGGACTTTGCGCTTGCTGTTTCGATGTCAAAAAGTGATGGAACGTCGGGACGCCATGAACTGAGGC
AAACATCGTCGGAACGCCATGACCCGCCGCTGCAGCACCGTCAAGTGCTCGGGCTGTCGCAAAATTCGTGGGTAGCCGCCGAAATTGCCGTGGGCTGGTGTTGGGCATCG
GGGTCGCGCGCTGTCGGGGGAGTGGGAGGAGTTGTGACGTGGGGAGTTACCCCACGTCACCCTTCTTCTTCCTCTCCAAGTGTTGAGAAGCAGAAGAAGAAGTGCGTTAC
AGAACAGAACCAAGGAAGAAACTCCCACAACTCTCTCTCTCAAAATTCTCTCAAACTCTCCCTCTCTTCTATCAAGGTCCACCTCGGCCCTACCGAGGAGACCGGGTTCG
CCCATTATAAAAAGGCTAAGTATGGGCGTCAAGATTCGACCTGGTCCGCCCTAGTGTTCAGGTCGGATCCGGAGATCGGGTTCGAGCTTGATTCGCGAAGAACCGTTGTG
CAAACTCTTGCATAA
Protein sequenceShow/hide protein sequence
MIKRRKQGLMTLVEKLLEFIAVQNWLVEHFFYTYASVGTTKTHWKTRFIKGKVGRKPVFLQARRRLAPPELALEARKVKPQNPMKPSSCRYVARLLELDLAAVGSPLGDD
GSPIKVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQLHPPQVLRVPRRSGRIVSQPDRYVSLTETQVVIPDDGVEDPLTYKKAMEDIDMDKWVKAMDLEMESIIA
NGLSDQASSSPSPSQELARYLQTGGEKRDEYNHNTQSGSMPRRSELSTPSLKDFALAVSMSKSDGTSGRHELRQTSSERHDPPLQHRQVLGLSQNSWVAAEIAVGWCWAS
GSRAVGGVGGVVTWGVTPRHPSSSSPSVEKQKKKCVTEQNQGRNSHNSLSQNSLKLSLSSIKVHLGPTEETGFAHYKKAKYGRQDSTWSALVFRSDPEIGFELDSRRTVV
QTLA