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Moc09g18630 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g18630
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr9:14538257..14538946
RNA-Seq ExpressionMoc09g18630
SyntenyMoc09g18630
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025482.1 uncharacterized protein E6C27_scaffold417G00860 [Cucumis melo var. makuwa]5.4e-6856.58Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILE--SKAGKTASFEWG------QLDEINTK
        MS      K   +RLVE+EEQ+L+L +VPD +R+LE+RL+E+  K D ID    R++ LP+++LL R + LE  +  G+  ++E G      ++ ++N +
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILE--SKAGKTASFEWG------QLDEINTK

Query:  VNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKK
        +NLT++A+ NQ   GG +  ++VKIP+PKP  GARDAKALEN+IFD++QYF+AT+T TEEAK+TLATMHL+EDAKLWW S+Y+DIQEGRCTI TWD LK+
Subjt:  VNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKK

Query:  ALRVQFFPENVEILARRKLRELRHTGNI
         LR+QFFPENVEILAR KLR+LRHTG I
Subjt:  ALRVQFFPENVEILARRKLRELRHTGNI

KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]9.2e-6850.19Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------
        MS    L K   +RLVE+EEQ+L+L +VPD +R+LE+RLEE++ K + IDA   R++  P++EL+ R + LE+    G+T ++E G              
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------

Query:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK
                                      ++ ++N +++LT++A+ NQ   GG +  ++VKIP+PKPF GARDAKALEN+IFD+EQYFRAT+T TEEAK
Subjt:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK

Query:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        +TLATMHL+EDAKLWW S+++DIQEGRCTI+TWD LK+ LR QFFPENVEILARRKLREL+HTG+IR+Y
Subjt:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]9.2e-6850.19Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------
        MS    L K   +RLVE+EEQ+L+L +VPD +R+LE+RLEE++ K + IDA   R++  P++EL+ R + LE+    G+T ++E G              
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------

Query:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK
                                      ++ ++N +++LT++A+ NQ   GG +  ++VKIP+PKPF GARDAKALEN+IFD+EQYFRAT+T TEEAK
Subjt:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK

Query:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        +TLATMHL+EDAKLWW S+++DIQEGRCTI+TWD LK+ LR QFFPENVEILARRKLREL+HTG+IR+Y
Subjt:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]5.1e-7455.43Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------
        MS  K+L+K+HV+RLVEIEEQLL+LR+VPD +R LE R++E + K   IDA NARID LP++++ +R E LESKA +  SFE G                
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------

Query:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT
                                    ++ EI+T+VNLT++AVGNQ     N+ FNK+K+P+PKPF G RDAK LENF+FDVEQYF+AT TT+EE K+T
Subjt:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT

Query:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        LATMHL +DAKLWW SK  DIQ GRCTIN+WD+LKK LR QFFP+NVE +ARRKLRELRHTG IRDY
Subjt:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]2.4e-6852.43Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------
        MS  K+L+K+HV+RLVEIEEQLL+LR+VPD +R LE R++E + K   IDA NAR+D LP++++ +R E  ESKA +  SFE G                
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------

Query:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT
                                    ++ EI+T+VNLT++AVGNQ     N+ FNK+K+P+PKPF G R  K LENF FDVEQYF+ T T +E  K+T
Subjt:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT

Query:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        LATMHL +DAKLWW SK  DIQ GRCTIN+WD+LKK LR QFF +NVE +ARRKLRELRHTG IRDY
Subjt:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

TrEMBL top hitse value%identityAlignment
A0A5A7T3M3 Reverse transcriptase4.5e-6850.19Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------
        MS    L K   +RLVE+EEQ+L+L +VPD +R+LE+RLEE++ K + IDA   R++  P++EL+ R + LE+    G+T ++E G              
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------

Query:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK
                                      ++ ++N +++LT++A+ NQ   GG +  ++VKIP+PKPF GARDAKALEN+IFD+EQYFRAT+T TEEAK
Subjt:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK

Query:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        +TLATMHL+EDAKLWW S+++DIQEGRCTI+TWD LK+ LR QFFPENVEILARRKLREL+HTG+IR+Y
Subjt:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

A0A5D3BKV0 Retrotrans_gag domain-containing protein2.6e-6856.58Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILE--SKAGKTASFEWG------QLDEINTK
        MS      K   +RLVE+EEQ+L+L +VPD +R+LE+RL+E+  K D ID    R++ LP+++LL R + LE  +  G+  ++E G      ++ ++N +
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILE--SKAGKTASFEWG------QLDEINTK

Query:  VNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKK
        +NLT++A+ NQ   GG +  ++VKIP+PKP  GARDAKALEN+IFD++QYF+AT+T TEEAK+TLATMHL+EDAKLWW S+Y+DIQEGRCTI TWD LK+
Subjt:  VNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKK

Query:  ALRVQFFPENVEILARRKLRELRHTGNI
         LR+QFFPENVEILAR KLR+LRHTG I
Subjt:  ALRVQFFPENVEILARRKLRELRHTGNI

A0A5D3BYE6 Reverse transcriptase4.5e-6850.19Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------
        MS    L K   +RLVE+EEQ+L+L +VPD +R+LE+RLEE++ K + IDA   R++  P++EL+ R + LE+    G+T ++E G              
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILES--KAGKTASFEWG--------------

Query:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK
                                      ++ ++N +++LT++A+ NQ   GG +  ++VKIP+PKPF GARDAKALEN+IFD+EQYFRAT+T TEEAK
Subjt:  ------------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAK

Query:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        +TLATMHL+EDAKLWW S+++DIQEGRCTI+TWD LK+ LR QFFPENVEILARRKLREL+HTG+IR+Y
Subjt:  ITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

A0A6J1D906 Reverse transcriptase2.5e-7455.43Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------
        MS  K+L+K+HV+RLVEIEEQLL+LR+VPD +R LE R++E + K   IDA NARID LP++++ +R E LESKA +  SFE G                
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------

Query:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT
                                    ++ EI+T+VNLT++AVGNQ     N+ FNK+K+P+PKPF G RDAK LENF+FDVEQYF+AT TT+EE K+T
Subjt:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT

Query:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        LATMHL +DAKLWW SK  DIQ GRCTIN+WD+LKK LR QFFP+NVE +ARRKLRELRHTG IRDY
Subjt:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

A0A6J1DK29 uncharacterized protein LOC1110218291.2e-6852.43Show/hide
Query:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------
        MS  K+L+K+HV+RLVEIEEQLL+LR+VPD +R LE R++E + K   IDA NAR+D LP++++ +R E  ESKA +  SFE G                
Subjt:  MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWG----------------

Query:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT
                                    ++ EI+T+VNLT++AVGNQ     N+ FNK+K+P+PKPF G R  K LENF FDVEQYF+ T T +E  K+T
Subjt:  ----------------------------QLDEINTKVNLTIKAVGNQCLIGGNVHFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKIT

Query:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY
        LATMHL +DAKLWW SK  DIQ GRCTIN+WD+LKK LR QFF +NVE +ARRKLRELRHTG IRDY
Subjt:  LATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNIRDY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTAGTGAAAAAGTTGAACAAGACACATGTCGAACGACTCGTGGAAATTGAGGAACAACTGTTGTTTCTGAGGGACGTCCCTGATCATGTTCGGTTCCTAGAAAA
TCGGCTAGAAGAGTTGGCTAGTAAGGCCGATGGAATCGATGCGACAAATGCTCGAATTGACGCATTGCCTGTGAAAGAGTTGTTGGTTAGGACTGAGATCCTAGAAAGTA
AAGCCGGGAAAACGGCTAGTTTCGAGTGGGGGCAGCTCGACGAGATAAACACGAAGGTGAACCTCACCATTAAAGCGGTGGGAAACCAGTGCCTAATAGGGGGCAATGTC
CATTTTAACAAGGTGAAGATTCCGAAGCCTAAGCCCTTCGGCGGGGCTCGCGATGCCAAGGCCCTCGAGAACTTCATATTTGACGTCGAACAGTACTTTCGAGCTACGAG
TACCACGACAGAAGAAGCCAAGATAACTTTGGCAACCATGCATCTAGCTGAAGATGCAAAGCTTTGGTGGATGTCCAAGTACATGGACATCCAAGAGGGACGATGCACTA
TAAACACATGGGATGAGTTGAAGAAAGCTCTCAGGGTGCAGTTTTTTCCGGAAAATGTTGAGATTCTAGCGAGACGTAAACTGCGAGAGTTGCGACACACTGGGAATATT
AGAGACTACGAAAACAGTTTGCTGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTAGTGAAAAAGTTGAACAAGACACATGTCGAACGACTCGTGGAAATTGAGGAACAACTGTTGTTTCTGAGGGACGTCCCTGATCATGTTCGGTTCCTAGAAAA
TCGGCTAGAAGAGTTGGCTAGTAAGGCCGATGGAATCGATGCGACAAATGCTCGAATTGACGCATTGCCTGTGAAAGAGTTGTTGGTTAGGACTGAGATCCTAGAAAGTA
AAGCCGGGAAAACGGCTAGTTTCGAGTGGGGGCAGCTCGACGAGATAAACACGAAGGTGAACCTCACCATTAAAGCGGTGGGAAACCAGTGCCTAATAGGGGGCAATGTC
CATTTTAACAAGGTGAAGATTCCGAAGCCTAAGCCCTTCGGCGGGGCTCGCGATGCCAAGGCCCTCGAGAACTTCATATTTGACGTCGAACAGTACTTTCGAGCTACGAG
TACCACGACAGAAGAAGCCAAGATAACTTTGGCAACCATGCATCTAGCTGAAGATGCAAAGCTTTGGTGGATGTCCAAGTACATGGACATCCAAGAGGGACGATGCACTA
TAAACACATGGGATGAGTTGAAGAAAGCTCTCAGGGTGCAGTTTTTTCCGGAAAATGTTGAGATTCTAGCGAGACGTAAACTGCGAGAGTTGCGACACACTGGGAATATT
AGAGACTACGAAAACAGTTTGCTGGACTGA
Protein sequenceShow/hide protein sequence
MSVVKKLNKTHVERLVEIEEQLLFLRDVPDHVRFLENRLEELASKADGIDATNARIDALPVKELLVRTEILESKAGKTASFEWGQLDEINTKVNLTIKAVGNQCLIGGNV
HFNKVKIPKPKPFGGARDAKALENFIFDVEQYFRATSTTTEEAKITLATMHLAEDAKLWWMSKYMDIQEGRCTINTWDELKKALRVQFFPENVEILARRKLRELRHTGNI
RDYENSLLD