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Moc09g19280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g19280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:15007437..15011978
RNA-Seq ExpressionMoc09g19280
SyntenyMoc09g19280
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]4.5e-4840.54Show/hide
Query:  GTMHFNLSETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM---------------------
        GT+ F   E DLP   +R+ + PTEELELVPLLSPEKQV IGTKLGATDREELI+FLRSNSDVFAWSHEDMP IDPKIM                     
Subjt:  GTMHFNLSETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM---------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPT
                                          VRS+LA F TYEVS+VPR+ENSN DALAKLASAYET+LARSVPVEILD PSI EPD+ME+G P  +
Subjt:  ----------------------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPT

Query:  WMDPIVELIKGNPPQDPKEQKKMTRRAARFTLR
        WMDPI + I+GN PQDPKE++K+ RRAARF +R
Subjt:  WMDPIVELIKGNPPQDPKEQKKMTRRAARFTLR

XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]1.2e-6161.16Show/hide
Query:  SETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM----------------------------
        S+ DLP+  KR+F   TEELELVPLLSPE+QV IGTKLGATDREE INFLR+NS+VFAWSHE+MPGIDPKIM                            
Subjt:  SETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM----------------------------

Query:  -----------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKG
                               VRS+LA   TYEV+QVPRSENSN DALAKLASAYETDLARSVPVEILD PSILEPD+MEV TP+P+WMD IVE IKG
Subjt:  -----------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKG

Query:  NPPQDPKEQKKMTRRAARFTLREG
        N PQDPKE KKM R+ A+F LR+G
Subjt:  NPPQDPKEQKKMTRRAARFTLREG

XP_022153142.1 uncharacterized protein LOC111020710 [Momordica charantia]2.8e-4268.03Show/hide
Query:  VRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKI-----MVRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILE
        +R+  +LGA+     I     +  +     E+    DP++      VRS+LA FGTYEVSQVPRSENSN DALAKLASAYETDLARSVPVEILDTPSILE
Subjt:  VRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKI-----MVRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILE

Query:  PDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLREG
        PDVMEV TPS TWMDPIVE IKGNPPQDPKEQKKM +RAARFTL+EG
Subjt:  PDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLREG

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]5.7e-4393.07Show/hide
Query:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE
        VR YLAHFGTYEVSQVPRSENSN DALAKLASAYE DLARSVPVEILDTPSILEPDVMEV TPSPTWMDPIVE IKGNPPQDPKEQKKM RRA RFTLRE
Subjt:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE

Query:  G
        G
Subjt:  G

XP_022155869.1 uncharacterized protein LOC111022882 [Momordica charantia]9.7e-4393.07Show/hide
Query:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE
        VRSYLA FGTYEVSQVPRS NSN D LAKLASAYETDLARSVPVEILDTPSILEPDVMEV TPSPTWMDPIVE IKGNPPQDPKEQKKM RRAARFTLRE
Subjt:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE

Query:  G
        G
Subjt:  G

TrEMBL top hitse value%identityAlignment
A0A6J1C617 Ribonuclease H2.2e-4840.54Show/hide
Query:  GTMHFNLSETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM---------------------
        GT+ F   E DLP   +R+ + PTEELELVPLLSPEKQV IGTKLGATDREELI+FLRSNSDVFAWSHEDMP IDPKIM                     
Subjt:  GTMHFNLSETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM---------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPT
                                          VRS+LA F TYEVS+VPR+ENSN DALAKLASAYET+LARSVPVEILD PSI EPD+ME+G P  +
Subjt:  ----------------------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPT

Query:  WMDPIVELIKGNPPQDPKEQKKMTRRAARFTLR
        WMDPI + I+GN PQDPKE++K+ RRAARF +R
Subjt:  WMDPIVELIKGNPPQDPKEQKKMTRRAARFTLR

A0A6J1D6M1 Ribonuclease H5.9e-6261.16Show/hide
Query:  SETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM----------------------------
        S+ DLP+  KR+F   TEELELVPLLSPE+QV IGTKLGATDREE INFLR+NS+VFAWSHE+MPGIDPKIM                            
Subjt:  SETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKIM----------------------------

Query:  -----------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKG
                               VRS+LA   TYEV+QVPRSENSN DALAKLASAYETDLARSVPVEILD PSILEPD+MEV TP+P+WMD IVE IKG
Subjt:  -----------------------VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKG

Query:  NPPQDPKEQKKMTRRAARFTLREG
        N PQDPKE KKM R+ A+F LR+G
Subjt:  NPPQDPKEQKKMTRRAARFTLREG

A0A6J1DI47 Ribonuclease H1.4e-4268.03Show/hide
Query:  VRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKI-----MVRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILE
        +R+  +LGA+     I     +  +     E+    DP++      VRS+LA FGTYEVSQVPRSENSN DALAKLASAYETDLARSVPVEILDTPSILE
Subjt:  VRIGTKLGATDREELINFLRSNSDVFAWSHEDMPGIDPKI-----MVRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILE

Query:  PDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLREG
        PDVMEV TPS TWMDPIVE IKGNPPQDPKEQKKM +RAARFTL+EG
Subjt:  PDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLREG

A0A6J1DNM4 Ribonuclease H2.8e-4393.07Show/hide
Query:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE
        VR YLAHFGTYEVSQVPRSENSN DALAKLASAYE DLARSVPVEILDTPSILEPDVMEV TPSPTWMDPIVE IKGNPPQDPKEQKKM RRA RFTLRE
Subjt:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE

Query:  G
        G
Subjt:  G

A0A6J1DRI7 uncharacterized protein LOC1110228824.7e-4393.07Show/hide
Query:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE
        VRSYLA FGTYEVSQVPRS NSN D LAKLASAYETDLARSVPVEILDTPSILEPDVMEV TPSPTWMDPIVE IKGNPPQDPKEQKKM RRAARFTLRE
Subjt:  VRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKGNPPQDPKEQKKMTRRAARFTLRE

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCCTGGAAGAGCAGACCAATTGTGGCAAGCTGCAAGGGTCCGTGATATGAACCAAGGAGCTACCTTTGTTATGCCTTATGGACCGATTACAAGATCGAGAGCTAG
GAAACTTCAACAAGCTTTGCTACTTCGTGTCCAAGCATTCTTGAACTCGACAAGAGAAAAAAAGGAAGATGTGCAAGAAGTTGGAACTATGCACTTCAATTTGTCCGAGA
CAGACCTGCCTAAGGAAGACAAACGGAAGTTCTCCCCGCCAACAGAAGAGCTCGAGCTTGTTCCTTTACTTAGCCCTGAAAAACAAGTAAGAATAGGAACCAAGCTGGGG
GCCACTGACAGGGAAGAACTGATAAATTTCCTCAGGTCTAACTCGGACGTCTTCGCATGGTCTCACGAGGACATGCCTGGCATCGACCCGAAGATCATGGTCAGATCGTA
CCTCGCTCATTTCGGGACTTACGAGGTAAGTCAAGTTCCAAGATCTGAGAACTCTAATACGGACGCATTGGCCAAGTTGGCATCAGCATATGAGACCGACCTGGCTAGAT
CGGTCCCGGTCGAGATCTTGGACACTCCTTCAATCTTGGAGCCAGATGTAATGGAGGTTGGTACTCCATCACCCACTTGGATGGACCCAATCGTGGAGCTCATCAAAGGA
AACCCACCGCAAGATCCGAAGGAGCAAAAGAAGATGACGCGAAGAGCAGCTCGGTTCACACTCCGAGAAGGAGGGAAAGAGTCAGAGCTAGAAGCAGAACTGCAATTGAA
TGTAGGGAAAGAAGAATTCATTAATTGGAGGACAGAGCCAAGGCTTATAGACCTTGCAGCTCCGCCCAAAGACTTACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCCCTGGAAGAGCAGACCAATTGTGGCAAGCTGCAAGGGTCCGTGATATGAACCAAGGAGCTACCTTTGTTATGCCTTATGGACCGATTACAAGATCGAGAGCTAG
GAAACTTCAACAAGCTTTGCTACTTCGTGTCCAAGCATTCTTGAACTCGACAAGAGAAAAAAAGGAAGATGTGCAAGAAGTTGGAACTATGCACTTCAATTTGTCCGAGA
CAGACCTGCCTAAGGAAGACAAACGGAAGTTCTCCCCGCCAACAGAAGAGCTCGAGCTTGTTCCTTTACTTAGCCCTGAAAAACAAGTAAGAATAGGAACCAAGCTGGGG
GCCACTGACAGGGAAGAACTGATAAATTTCCTCAGGTCTAACTCGGACGTCTTCGCATGGTCTCACGAGGACATGCCTGGCATCGACCCGAAGATCATGGTCAGATCGTA
CCTCGCTCATTTCGGGACTTACGAGGTAAGTCAAGTTCCAAGATCTGAGAACTCTAATACGGACGCATTGGCCAAGTTGGCATCAGCATATGAGACCGACCTGGCTAGAT
CGGTCCCGGTCGAGATCTTGGACACTCCTTCAATCTTGGAGCCAGATGTAATGGAGGTTGGTACTCCATCACCCACTTGGATGGACCCAATCGTGGAGCTCATCAAAGGA
AACCCACCGCAAGATCCGAAGGAGCAAAAGAAGATGACGCGAAGAGCAGCTCGGTTCACACTCCGAGAAGGAGGGAAAGAGTCAGAGCTAGAAGCAGAACTGCAATTGAA
TGTAGGGAAAGAAGAATTCATTAATTGGAGGACAGAGCCAAGGCTTATAGACCTTGCAGCTCCGCCCAAAGACTTACAATAG
Protein sequenceShow/hide protein sequence
MRPGRADQLWQAARVRDMNQGATFVMPYGPITRSRARKLQQALLLRVQAFLNSTREKKEDVQEVGTMHFNLSETDLPKEDKRKFSPPTEELELVPLLSPEKQVRIGTKLG
ATDREELINFLRSNSDVFAWSHEDMPGIDPKIMVRSYLAHFGTYEVSQVPRSENSNTDALAKLASAYETDLARSVPVEILDTPSILEPDVMEVGTPSPTWMDPIVELIKG
NPPQDPKEQKKMTRRAARFTLREGGKESELEAELQLNVGKEEFINWRTEPRLIDLAAPPKDLQ