CuGenDBv2

Gene ID	Moc09g24370
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	chr9:18307706..18310858
RNA-Seq Expression	Moc09g24370
Synteny	Moc09g24370
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0009987 - cellular process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

PNY13708.1 hypothetical protein L195_g010371 [Trifolium pratense]

1.9e-25

45.64

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +GV  HL  E  PEE V  + GE   NPNY+ WI ND LL SWLL  + EEVL +++  +T++ IW S+EEQLL  T E    L   L++++KGS +LDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF
        +L++FKS C  LAA+K+P+ D  KVF  A GLG+  E      +  P +
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.6e-27

29.21

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+  HL E R   E  +  + +   + +   W +ND LLTSWLL ++TEEV+ +L+ T T++ +W SL E+LL +TKE E+ L   L  ++KG+ SLDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNFVG------------------------------------GPGRNRRSKMGSA
        +L++FK  C  LAA++KP+ D  KVF LA+GLG          ++ P +                                      G GRN+  +  S 
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNFVG------------------------------------GPGRNRRSKMGSA

Query:  G---GPWAEHDSGPSPGSRPSL-GRDRAPRGPV--------GFPPIITCSSTTNSHCITLSKPPNPTYNQFVAALKNHESKQG-----------------
        G    P    ++  +   R ++    R PR             P I   +STT+ H     K  N    Q +AA+  HE ++                  
Subjt:  G---GPWAEHDSGPSPGSRPSL-GRDRAPRGPV--------GFPPIITCSSTTNSHCITLSKPPNPTYNQFVAALKNHESKQG-----------------

Query:  --------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV
                      Q+L +GTKK GLYAL E   +A      V+ S KA   +WH RMGHP   ++K  ++    K+++V
Subjt:  --------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV

RVW82530.1 hypothetical protein CK203_046287 [Vitis vinifera]

7.7e-27

28.53

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+  HL E R   E  +  + +   + +   W +ND LLTSWLL ++TEEV+ +L+ T T++ +W SL E+LL +TKE E+ L   L  ++KG+ SLDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL
        +L++FK  C  LAA++KP+ D  KVF LA+GLG          ++ P +                +       +  +      + +   G + G R  S 
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL

Query:  GRDRAPRGPVGFPPIITCSSTTNSHC-----------------ITLSKPPNPTYNQF----------------VAALKNHESKQG---------------
        GR   P G   F    T     N H                  I+   P N   NQF                +AA+  HE ++                
Subjt:  GRDRAPRGPVGFPPIITCSSTTNSHC-----------------ITLSKPPNPTYNQF----------------VAALKNHESKQG---------------

Query:  ----------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV
                        Q+L +GTKK GLYAL E   +A      V+ S KA   +WH RMGHP   ++K  ++    K+++V
Subjt:  ----------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV

RVW93768.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

5.0e-26

28.35

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+  HL E R   E  +  + +   + +   W +ND LLTSWLL ++T+EV+ +L+ T T++ +W SL E+LL +TKE E+ L   L  ++KG+ SLDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL
        +L++FK  C  LAA++KP+ D  KVF LA+GLG          ++ P +                +       +  +      + +   G + G R  S 
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL

Query:  GRDRAPRGPVGFPPIITCSSTTNSHCITLSKPPNPTYNQF------------VAALKNHESKQG------------------------------------
        GR   P G   F    T     N H  T   P N   NQF            +AA+  HE ++                                     
Subjt:  GRDRAPRGPVGFPPIITCSSTTNSHCITLSKPPNPTYNQF------------VAALKNHESKQG------------------------------------

Query:  ---------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV
                       Q+L +GTKKEGLYAL E   +A      V+ S KA   +WH  MGHP   ++K  ++    K+++V
Subjt:  ---------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]

2.0e-35

59.4

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+E HL EE P  +     +GE+        WINND LLTSWLL II E+VL +LE T T+  +W SLEE LL +TKENE+HLNEALL+L+KGSLS+DE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLG
        ++++FK+ C +L AMKKPL+D TKVFHLARGLG
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLG

TrEMBL top hits

e value

%identity

Alignment

A0A2K3PEI3 Reverse transcriptase Ty1/copia-type domain-containing protein

9.2e-26

45.64

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +GV  HL  E  PEE V  + GE   NPNY+ WI ND LL SWLL  + EEVL +++  +T++ IW S+EEQLL  T E    L   L++++KGS +LDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF
        +L++FKS C  LAA+K+P+ D  KVF  A GLG+  E      +  P +
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF

A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE1

7.5e-28

29.21

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+  HL E R   E  +  + +   + +   W +ND LLTSWLL ++TEEV+ +L+ T T++ +W SL E+LL +TKE E+ L   L  ++KG+ SLDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNFVG------------------------------------GPGRNRRSKMGSA
        +L++FK  C  LAA++KP+ D  KVF LA+GLG          ++ P +                                      G GRN+  +  S 
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNFVG------------------------------------GPGRNRRSKMGSA

Query:  G---GPWAEHDSGPSPGSRPSL-GRDRAPRGPV--------GFPPIITCSSTTNSHCITLSKPPNPTYNQFVAALKNHESKQG-----------------
        G    P    ++  +   R ++    R PR             P I   +STT+ H     K  N    Q +AA+  HE ++                  
Subjt:  G---GPWAEHDSGPSPGSRPSL-GRDRAPRGPV--------GFPPIITCSSTTNSHCITLSKPPNPTYNQFVAALKNHESKQG-----------------

Query:  --------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV
                      Q+L +GTKK GLYAL E   +A      V+ S KA   +WH RMGHP   ++K  ++    K+++V
Subjt:  --------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV

A0A438HDK5 Uncharacterized protein

3.7e-27

28.53

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+  HL E R   E  +  + +   + +   W +ND LLTSWLL ++TEEV+ +L+ T T++ +W SL E+LL +TKE E+ L   L  ++KG+ SLDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL
        +L++FK  C  LAA++KP+ D  KVF LA+GLG          ++ P +                +       +  +      + +   G + G R  S 
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL

Query:  GRDRAPRGPVGFPPIITCSSTTNSHC-----------------ITLSKPPNPTYNQF----------------VAALKNHESKQG---------------
        GR   P G   F    T     N H                  I+   P N   NQF                +AA+  HE ++                
Subjt:  GRDRAPRGPVGFPPIITCSSTTNSHC-----------------ITLSKPPNPTYNQF----------------VAALKNHESKQG---------------

Query:  ----------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV
                        Q+L +GTKK GLYAL E   +A      V+ S KA   +WH RMGHP   ++K  ++    K+++V
Subjt:  ----------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV

A0A438IAM2 Retrovirus-related Pol polyprotein from transposon RE1

2.4e-26

28.35

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+  HL E R   E  +  + +   + +   W +ND LLTSWLL ++T+EV+ +L+ T T++ +W SL E+LL +TKE E+ L   L  ++KG+ SLDE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL
        +L++FK  C  LAA++KP+ D  KVF LA+GLG          ++ P +                +       +  +      + +   G + G R  S 
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNF----------------VGGPGRNRRSKMGSAGGPWAEHDSGPSPGSR-PSL

Query:  GRDRAPRGPVGFPPIITCSSTTNSHCITLSKPPNPTYNQF------------VAALKNHESKQG------------------------------------
        GR   P G   F    T     N H  T   P N   NQF            +AA+  HE ++                                     
Subjt:  GRDRAPRGPVGFPPIITCSSTTNSHCITLSKPPNPTYNQF------------VAALKNHESKQG------------------------------------

Query:  ---------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV
                       Q+L +GTKKEGLYAL E   +A      V+ S KA   +WH  MGHP   ++K  ++    K+++V
Subjt:  ---------------QILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDV

A0A6J1DMG5 uncharacterized protein LOC111021379

9.8e-36

59.4

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Query:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE
        +G+E HL EE P  +     +GE+        WINND LLTSWLL II E+VL +LE T T+  +W SLEE LL +TKENE+HLNEALL+L+KGSLS+DE
Subjt:  MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDE

Query:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLG
        ++++FK+ C +L AMKKPL+D TKVFHLARGLG
Subjt:  FLKQFKSFCYKLAAMKKPLEDTTKVFHLARGLG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.2e-06

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Query:  FIFVMRGWEGSASDSRVLRDAVSR--------PNGLNVPRGFLVPYRGERYHLTKW
        FI+V+ GWEGSA DSRVL DA+ +         N LN    FL P+RG RYHL ++
Subjt:  FIFVMRGWEGSASDSRVLRDAVSR--------PNGLNVPRGFLVPYRGERYHLTKW

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.2e-04

41.82

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Query:  QFIFVMRGWEGSASDSRVLRDAVSRPNGLNVPR--------------GFLVPYRG
        +F +V+ GWEGSASD +VL  A++R N L VP+              GF+ PY G
Subjt:  QFIFVMRGWEGSASDSRVLRDAVSRPNGLNVPR--------------GFLVPYRG

Sequences

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CDS sequence

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ATGGGAGTGGAACAACATCTTTATGAAGAAAGGCCTCCAGAAGAATTTGTTGTGGACAATAAGGGAGAAAATGTAGAAAATCCAAACTACAACTTCTGGATCAAC
AATGATAGATTACTCACATCTTGGTTGTTGAGAATCATCACAGAGGAAGTTCTCAACATGCTTGAAAGCACCAACACATCACATCACATATGGAAATCTTTGGAA
GAGCAGCTACTTGCCATCACCAAAGAAAATGAGCTTCATCTTAATGAAGCGTTGCTCAGCTTAAGAAAAGGAAGTTTAAGCCTTGATGAATTCCTAAAACAATTC
AAGAGCTTTTGTTACAAGTTGGCAGCTATGAAGAAGCCATTAGAAGATACAACAAAGGTATTCCATTTAGCAAGGGGCTTGGGAAACAACTGTGAAGTTGTTCCA
GAACTTTCCGTAGCTAACCCCAATTTCGTTGGAGGGCCTGGGCGAAATCGTCGATCGAAGATGGGGAGCGCTGGAGGGCCGTGGGCCGAGCACGACTCGGGACCG
AGCCCCGGGTCGAGACCGAGCTTAGGTCGGGACCGAGCCCCTCGCGGCCCAGTGGGCTTCCCTCCAATCATAACCTGTAGCTCGACTACCAATTCCCATTGCATA
ACACTGTCAAAGCCCCCTAATCCTACATATAACCAATTTGTGGCTGCCTTGAAAAATCATGAGAGCAAGCAGGGGCAAATCTTGGGCAAGGGGACTAAAAAGGAA
GGATTGTATGCCTTAATTGAACAAAATCAAGAAGCTTTCAAGGCGTTTACTGCGGTTTCAAGCTCGAAGAAGGCCCCATACTCCATATGGCATATGAGAATGGGT
CATCCTAATGACACTACCTTAAAGAGAACAGAGGAGTTGATAGCGACTAAATATGTGGATGTCGAGGAGATGGTCGCTATTTTTCTCCATATCCTAGCACATGAT
GTCAAGATTAGAGTCAATGGACAGTTCATATTTGTTATGCGTGGGTGGGAAGGATCCGCATCCGATTCAAGAGTTCTAAGAGATGCAGTATCTCGACCTAATGGT
CTAAATGTCCCAAGGGGATTCTTGGTGCCATATCGTGGAGAACGATACCATTTGACTAAATGGCGTGCGGGAAACGAACCAACTGAAAGGATGTGA

mRNA sequence

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Protein sequence

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MGVEQHLYEERPPEEFVVDNKGENVENPNYNFWINNDRLLTSWLLRIITEEVLNMLESTNTSHHIWKSLEEQLLAITKENELHLNEALLSLRKGSLSLDEFLKQF
KSFCYKLAAMKKPLEDTTKVFHLARGLGNNCEVVPELSVANPNFVGGPGRNRRSKMGSAGGPWAEHDSGPSPGSRPSLGRDRAPRGPVGFPPIITCSSTTNSHCI
TLSKPPNPTYNQFVAALKNHESKQGQILGKGTKKEGLYALIEQNQEAFKAFTAVSSSKKAPYSIWHMRMGHPNDTTLKRTEELIATKYVDVEEMVAIFLHILAHD
VKIRVNGQFIFVMRGWEGSASDSRVLRDAVSRPNGLNVPRGFLVPYRGERYHLTKWRAGNEPTERM

Moc09g24370 (gene) of Bitter gourd (OHB3-1) v2 genome