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Moc09g24660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g24660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:18506187..18512115
RNA-Seq ExpressionMoc09g24660
SyntenyMoc09g24660
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150033.1 uncharacterized protein LOC111018305 [Momordica charantia]2.4e-2569.89Show/hide
Query:  TEYGSSHPQPWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        T   S+  QPWTMY  GSSNEKGC A VLLL P  M FEYALRFNFRTSNNEAE + LLAGL MARGLGASH+++FSD Q IVNQIK+  + K
Subjt:  TEYGSSHPQPWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

XP_022150038.1 uncharacterized protein K02A2.6-like [Momordica charantia]2.2e-2673.81Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT+Y  GSSNEKGC A +LLL P G  FEYALRFNFRTSNNEAEYEALLAGLR+A+GLGASH+++FSD Q IVNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]5.3e-2569.05Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT++  GSSNE+GC+  +LLL P G  FEYAL+FNFRTSNNEAEYEALLAGLR+A+GLGASH+++FSD Q IVNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

XP_022157610.1 uncharacterized protein LOC111024267 [Momordica charantia]4.1e-2569.05Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT+Y  GSSNEKGC A +LLL P GM FEYALRFNF TSNNEAEYE LLAGLR+A+GLGA+H+++F+D Q +VNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

XP_022157920.1 uncharacterized protein LOC111024530 [Momordica charantia]4.1e-2570.24Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT+Y  GSSNE+GC A++LLL P G  FEYALRFNFRTSNNEAEYEALLAGLR+A+GL A+H+++FSD Q IVNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

TrEMBL top hitse value%identityAlignment
A0A6J1D8D3 Ribonuclease H1.2e-2569.89Show/hide
Query:  TEYGSSHPQPWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        T   S+  QPWTMY  GSSNEKGC A VLLL P  M FEYALRFNFRTSNNEAE + LLAGL MARGLGASH+++FSD Q IVNQIK+  + K
Subjt:  TEYGSSHPQPWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

A0A6J1D8D8 Ribonuclease H1.0e-2673.81Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT+Y  GSSNEKGC A +LLL P G  FEYALRFNFRTSNNEAEYEALLAGLR+A+GLGASH+++FSD Q IVNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

A0A6J1DNM4 Ribonuclease H2.6e-2569.05Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT++  GSSNE+GC+  +LLL P G  FEYAL+FNFRTSNNEAEYEALLAGLR+A+GLGASH+++FSD Q IVNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

A0A6J1DTK4 uncharacterized protein LOC1110242672.0e-2569.05Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT+Y  GSSNEKGC A +LLL P GM FEYALRFNF TSNNEAEYE LLAGLR+A+GLGA+H+++F+D Q +VNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

A0A6J1DUD2 uncharacterized protein LOC1110245302.0e-2570.24Show/hide
Query:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK
        PWT+Y  GSSNE+GC A++LLL P G  FEYALRFNFRTSNNEAEYEALLAGLR+A+GL A+H+++FSD Q IVNQIK+  + K
Subjt:  PWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRMARGLGASHVQIFSDYQQIVNQIKKNIRQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGTTCAGATTCAGAGAGAAGAACAGGGGAGTTTGTGGAGTGTTTTGTACCCGGGATAAAGAAGGTCTTTTTTTCCTCGATACTAACGGCTAGTTTTGGTCCTTC
GAGGAGAAAGGTTGGGTTGAGGAGAGATGAAGTCTGTGAGGGAGAGGTTGGTAAAGGTAGATTATGTGGGTGTATCAGAGCCAGGTTGTGGCCAGAGACCAATTCAGATG
GGTTAATGATGTGTAAGGGGGGAGGTGGGGGTGTGATAGGTGGTGGGGGTCTCGATAGGCTAGGGTTTGACTTTGATGTTGATGGGTCACATGGGCCAGCTATAAGATGC
AGGAGTGGGGCCCAGTTGGACAGTGCAGGCGCCGATCTAAAAAATCGGTCGAAGGGGCAAAAGATGGCCAGATCAGTGCGAACTCCGGTGGAGCATGATGGCCTGTTCTT
TGCCCTCACATCGAAGGAGAGCTTTATCAGCTGTGTATGGATTAAGGGTGCAGAAGAAACTGATGTGTTCTCTAAGGGCCCTTGTAATTTTGAGCCAATCGTAGGTGGAC
ATGGGAGAGCTTCAGGCAAGGGCATGTTGGGTCGCCTGGAAGGGGTGGGGGATGGGGTTGGTGGGTGGTCGCGGGAGAGAGAGTGGCACACTTCTTCTACACGTATACAT
CGGTTGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCACGCAGGCGCCTGGCGCCTCCTGAGCTTTCT
AACACATGGACAAGGTAAAGCAAAAGCAACCGAGTATGGTTCTTCACACCCCCAGCCATGGACGATGTACGCGTATGGTTCTTCAAATGAGAAAGGATGTGACGCGGATG
TGCTTCTCCTCACCCCGTATGGCATGCATTTTGAGTATGCTCTTCGCTTCAACTTCCGTACTTCAAACAATGAGGCAGAGTATGAAGCCTTGTTGGCCGGGCTACGCATG
GCAAGAGGACTTGGAGCCAGCCACGTTCAAATTTTCAGTGATTATCAGCAGATAGTGAATCAGATAAAAAAGAATATCAGACAAAAGATTCTCAGATGGAGAAATATCTA
G
mRNA sequenceShow/hide mRNA sequence
ATGCATTGTTCAGATTCAGAGAGAAGAACAGGGGAGTTTGTGGAGTGTTTTGTACCCGGGATAAAGAAGGTCTTTTTTTCCTCGATACTAACGGCTAGTTTTGGTCCTTC
GAGGAGAAAGGTTGGGTTGAGGAGAGATGAAGTCTGTGAGGGAGAGGTTGGTAAAGGTAGATTATGTGGGTGTATCAGAGCCAGGTTGTGGCCAGAGACCAATTCAGATG
GGTTAATGATGTGTAAGGGGGGAGGTGGGGGTGTGATAGGTGGTGGGGGTCTCGATAGGCTAGGGTTTGACTTTGATGTTGATGGGTCACATGGGCCAGCTATAAGATGC
AGGAGTGGGGCCCAGTTGGACAGTGCAGGCGCCGATCTAAAAAATCGGTCGAAGGGGCAAAAGATGGCCAGATCAGTGCGAACTCCGGTGGAGCATGATGGCCTGTTCTT
TGCCCTCACATCGAAGGAGAGCTTTATCAGCTGTGTATGGATTAAGGGTGCAGAAGAAACTGATGTGTTCTCTAAGGGCCCTTGTAATTTTGAGCCAATCGTAGGTGGAC
ATGGGAGAGCTTCAGGCAAGGGCATGTTGGGTCGCCTGGAAGGGGTGGGGGATGGGGTTGGTGGGTGGTCGCGGGAGAGAGAGTGGCACACTTCTTCTACACGTATACAT
CGGTTGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCACGCAGGCGCCTGGCGCCTCCTGAGCTTTCT
AACACATGGACAAGGTAAAGCAAAAGCAACCGAGTATGGTTCTTCACACCCCCAGCCATGGACGATGTACGCGTATGGTTCTTCAAATGAGAAAGGATGTGACGCGGATG
TGCTTCTCCTCACCCCGTATGGCATGCATTTTGAGTATGCTCTTCGCTTCAACTTCCGTACTTCAAACAATGAGGCAGAGTATGAAGCCTTGTTGGCCGGGCTACGCATG
GCAAGAGGACTTGGAGCCAGCCACGTTCAAATTTTCAGTGATTATCAGCAGATAGTGAATCAGATAAAAAAGAATATCAGACAAAAGATTCTCAGATGGAGAAATATCTA
G
Protein sequenceShow/hide protein sequence
MHCSDSERRTGEFVECFVPGIKKVFFSSILTASFGPSRRKVGLRRDEVCEGEVGKGRLCGCIRARLWPETNSDGLMMCKGGGGGVIGGGGLDRLGFDFDVDGSHGPAIRC
RSGAQLDSAGADLKNRSKGQKMARSVRTPVEHDGLFFALTSKESFISCVWIKGAEETDVFSKGPCNFEPIVGGHGRASGKGMLGRLEGVGDGVGGWSREREWHTSSTRIH
RLEPPKRIGRRVSLRAKLEENQFFCRHAGAWRLLSFLTHGQGKAKATEYGSSHPQPWTMYAYGSSNEKGCDADVLLLTPYGMHFEYALRFNFRTSNNEAEYEALLAGLRM
ARGLGASHVQIFSDYQQIVNQIKKNIRQKILRWRNI