; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g24670 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g24670
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr9:18512934..18515874
RNA-Seq ExpressionMoc09g24670
SyntenyMoc09g24670
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN83561.1 hypothetical protein VITISV_024106 [Vitis vinifera]1.7e-4933.5Show/hide
Query:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL
        R+   A   N  +GF  G N     HLQFA+ TI FS   +  L  + +++ +F   SGL +N  KS I GINL +  LS L     CK       YLGL
Subjt:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL

Query:  PLCVNGENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLA
        PL  N +  G        +  P   GG+G+ N+  +N +LL KW WRY +E + LW  VI + +G  S      T    + +  W AI +          
Subjt:  PLCVNGENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLA

Query:  YKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFST
        Y  GNG +I FW+  W    P    +P L+ +   K   IS          WNL +RRN+ D EI +   L   L  ++L+    D   W L ++G FS 
Subjt:  YKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFST

Query:  TSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACT
         S              L+ S+   QN     VW  + P KV  F+W ++H+ +NTND LQ R  Y A+SP  CI+C    ES  HLF+ C+
Subjt:  TSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACT

CAN83561.1 hypothetical protein VITISV_024106 [Vitis vinifera]7.3e-2143.09Show/hide
Query:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY
        MR F+SFI   EL D PL N  +TWS+ ++S +   +DRFL S E+   F       L R TSDH+ I++      WGP+PFRFEN+WLQH + K     
Subjt:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY

Query:  WWLNTPFRGWPGHGFIEKLKGLK
        WW      GW GH F+ +L+ +K
Subjt:  WWLNTPFRGWPGHGFIEKLKGLK

CAN83561.1 hypothetical protein VITISV_024106 [Vitis vinifera]2.8e-4929.42Show/hide
Query:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL
        R+   A + N   G   G++ +   HLQFA+ TI F   ++    N+  +++LF + SG+ IN  KS ILGIN   E L+++   + C++G     YLGL
Subjt:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL

Query:  PL---------------------------CVN---------------------------------------------GENNGMHLLKRVILQLPIEGGGV
        PL                           C++                                              E    HL++ V +    E GG+
Subjt:  PL---------------------------CVN---------------------------------------------GENNGMHLLKRVILQLPIEGGGV

Query:  GIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEAS--WNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTF
        GI +++ +N++L AKW WR+  E  +LW  +I++K+G  S  W+ K +     + ++PW  I K          +  GNG KI FW+  W+     K  F
Subjt:  GIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEAS--WNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTF

Query:  PLLYALSTRKEAPISDFWD--EYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHL-TLESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQ
        P LY+LS RK   I+ F +  E    W+  +RRN+ + EI E V L   L  V L     D   W++E  GSFS  S  +   STTS+          P 
Subjt:  PLLYALSTRKEAPISDFWD--EYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHL-TLESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQ

Query:  NSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALP
           Y ++WK K P K+ FF+W  ++  INT D +QRR   + +SP WC+ CK + E+  HLFI C+++      +L   G    +P
Subjt:  NSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALP

RVW54428.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.3e-4932.09Show/hide
Query:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL
        R+   A   N  +GF  G N     HLQFA+ TI FS   +  L  + +++  F   SGL +N  KS I GINL +  +S L     CK       YLGL
Subjt:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL

Query:  PLCVN------------------------------------GENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKF
        PL  N                                    GE    HL++  ++  P E GG+G  N+ L+N +LL KW WRY +E   LW  VI + +
Subjt:  PLCVN------------------------------------GENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKF

Query:  GEAS--WN-HKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIK
        G  S  W+ + +V  SH   + PW AI +          +  GNG +I FW+  W    P    +P L+ +   K  PIS          WNL +RRN+ 
Subjt:  GEAS--WN-HKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIK

Query:  DDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQR
        D EI +   L   L  VHL+    D   W L ++G FS  S         +L++        P       VW  + P KV  F+W ++H+ +NTND LQ 
Subjt:  DDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQR

Query:  RLLYIAISPQWCIICKNSLESQQHLFIACT
        R  Y A+SP  CI+C    ES  H+F+ C+
Subjt:  RLLYIAISPQWCIICKNSLESQQHLFIACT

RVW89101.1 putative ribonuclease H protein [Vitis vinifera]7.5e-5028.04Show/hide
Query:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY
        MR F+  I++ +L+D+PL  G +TWS   ++  ++ +DRFL S ++   F       L RP S+H+ ILL  G  + G  PFRFEN+WL+ +  K L++ 
Subjt:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY

Query:  WWLNTPFRGWPGHGFIEKLKGLKHIIARVLSESQRIRSHMEKMDSGMYLINKLL---------HHYQWATLRLTSHAANNNFTKGFDDGNNSLATHHLQF
        WW    F G       EKLK LK I+               K+  G   +NK L            +  TL L    A       F+           Q 
Subjt:  WWLNTPFRGWPGHGFIEKLKGLKHIIARVLSESQRIRSHMEKMDSGMYLINKLL---------HHYQWATLRLTSHAANNNFTKGFDDGNNSLATHHLQF

Query:  ANATILFSPFEDFSLTN-MFNIIRLFEEASGLNIN----PQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGLPL-CVNGENNGMHLLKRVILQLPI
        +    L     +    + M N  R     S + IN     ++ +I G  +G  E            G    +  GL    ++GE+       R+     I
Subjt:  ANATILFSPFEDFSLTN-MFNIIRLFEEASGLNIN----PQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGLPL-CVNGENNGMHLLKRVILQLPI

Query:  EGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFK
          GG+G+  +   N++LL KWNWR+  E   LWR VI  KFGE                  W  IRK   L+  ++ +  GNGR++ FW+  W  +    
Subjt:  EGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFK

Query:  QTFPLLYALSTRKEAPISDFWDEY--TACWNLGWRRNIKDDEINEWVDLSFRLTWVHLT-LESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNK
          FP LYA ++ KEA + + WD       WN  + R+  D E+ E   L   +    L  L  D + WK   +G FS  SL +   S   +        +
Subjt:  QTFPLLYALSTRKEAPISDFWDEY--TACWNLGWRRNIKDDEINEWVDLSFRLTWVHLT-LESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNK

Query:  VPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL
         P    Y+ +W    P KV+FF WE     + T D+L++R   +A     C +C    ES  H+ I C+ A    + +   FG +  LP+ +
Subjt:  VPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL

RVX21092.1 putative ribonuclease H protein [Vitis vinifera]3.6e-5224.49Show/hide
Query:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY
        MR F   I+   L DIPL  G +TWS   ++     +DRFLA+  +L +F    +RRL RPTSDHY ILL  G  + G SPF+FEN+WL+ +  + LI+ 
Subjt:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY

Query:  WWLNTPFRGWPGHGFIEKLKGLK-----------------------------------------------------------------------------
        WW      G P +    KLKGLK                                                                             
Subjt:  WWLNTPFRGWPGHGFIEKLKGLK-----------------------------------------------------------------------------

Query:  -----HIIARV----------------LSESQRIRS--------------HMEKMDSGMYLINKLLHHYQ----WATLR---------------------
             H +A                  L+E Q +R                M++MD  +YL  ++L   +    W  L+                     
Subjt:  -----HIIARV----------------LSESQRIRS--------------HMEKMDSGMYLINKLLHHYQ----WATLR---------------------

Query:  ---LTSHAANNNFTKG---FDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGE-EELSSLESKFACKMGTSL
           L + AA   F KG   +     ++   HL FA+ TI+F   +  +L ++  ++  FE ASGL IN  KS +  I +GE + +  + ++  C++G   
Subjt:  ---LTSHAANNNFTKG---FDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGE-EELSSLESKFACKMGTSL

Query:  STYLGLPLCV----------------------------------------------------------------------NGENNG--MHLLKRVILQLP
        + YLGLPL                                                                         G N G   HL+K   +   
Subjt:  STYLGLPLCV----------------------------------------------------------------------NGENNG--MHLLKRVILQLP

Query:  IEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPF
         E GG+G+  + L NK+LL KW WR+       W+ V+EAK+G+  +  +    +       W  I K     +  + +K G G +I FW   W  +   
Subjt:  IEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPF

Query:  KQTFPLLYALSTRKEAPISDFWDEYT--ACWNLGWRRNIKDDEINEWVDLSFRLTWVHLTLESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNK
         Q FP L++++  +   + + WD+ T    W LG  R++ D E+    ++   L    +T+E D ++WK   +G F      N   ++  L     HSN 
Subjt:  KQTFPLLYALSTRKEAPISDFWDEYT--ACWNLGWRRNIKDDEINEWVDLSFRLTWVHLTLESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNK

Query:  VPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL
                 VW  K P K+ FF WE +   + T D+LQRR  ++   P  C +C    E+  H+ I CT A      IL   G     PN +
Subjt:  VPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL

TrEMBL top hitse value%identityAlignment
A0A438F352 Transposon TX1 uncharacterized 149 kDa protein6.2e-5032.09Show/hide
Query:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL
        R+   A   N  +GF  G N     HLQFA+ TI FS   +  L  + +++  F   SGL +N  KS I GINL +  +S L     CK       YLGL
Subjt:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL

Query:  PLCVN------------------------------------GENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKF
        PL  N                                    GE    HL++  ++  P E GG+G  N+ L+N +LL KW WRY +E   LW  VI + +
Subjt:  PLCVN------------------------------------GENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKF

Query:  GEAS--WN-HKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIK
        G  S  W+ + +V  SH   + PW AI +          +  GNG +I FW+  W    P    +P L+ +   K  PIS          WNL +RRN+ 
Subjt:  GEAS--WN-HKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIK

Query:  DDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQR
        D EI +   L   L  VHL+    D   W L ++G FS  S         +L++        P       VW  + P KV  F+W ++H+ +NTND LQ 
Subjt:  DDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQR

Query:  RLLYIAISPQWCIICKNSLESQQHLFIACT
        R  Y A+SP  CI+C    ES  H+F+ C+
Subjt:  RLLYIAISPQWCIICKNSLESQQHLFIACT

A0A438HXB1 Putative ribonuclease H protein3.6e-5028.04Show/hide
Query:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY
        MR F+  I++ +L+D+PL  G +TWS   ++  ++ +DRFL S ++   F       L RP S+H+ ILL  G  + G  PFRFEN+WL+ +  K L++ 
Subjt:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY

Query:  WWLNTPFRGWPGHGFIEKLKGLKHIIARVLSESQRIRSHMEKMDSGMYLINKLL---------HHYQWATLRLTSHAANNNFTKGFDDGNNSLATHHLQF
        WW    F G       EKLK LK I+               K+  G   +NK L            +  TL L    A       F+           Q 
Subjt:  WWLNTPFRGWPGHGFIEKLKGLKHIIARVLSESQRIRSHMEKMDSGMYLINKLL---------HHYQWATLRLTSHAANNNFTKGFDDGNNSLATHHLQF

Query:  ANATILFSPFEDFSLTN-MFNIIRLFEEASGLNIN----PQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGLPL-CVNGENNGMHLLKRVILQLPI
        +    L     +    + M N  R     S + IN     ++ +I G  +G  E            G    +  GL    ++GE+       R+     I
Subjt:  ANATILFSPFEDFSLTN-MFNIIRLFEEASGLNIN----PQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGLPL-CVNGENNGMHLLKRVILQLPI

Query:  EGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFK
          GG+G+  +   N++LL KWNWR+  E   LWR VI  KFGE                  W  IRK   L+  ++ +  GNGR++ FW+  W  +    
Subjt:  EGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFK

Query:  QTFPLLYALSTRKEAPISDFWDEY--TACWNLGWRRNIKDDEINEWVDLSFRLTWVHLT-LESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNK
          FP LYA ++ KEA + + WD       WN  + R+  D E+ E   L   +    L  L  D + WK   +G FS  SL +   S   +        +
Subjt:  QTFPLLYALSTRKEAPISDFWDEY--TACWNLGWRRNIKDDEINEWVDLSFRLTWVHLT-LESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNK

Query:  VPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL
         P    Y+ +W    P KV+FF WE     + T D+L++R   +A     C +C    ES  H+ I C+ A    + +   FG +  LP+ +
Subjt:  VPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL

A0A803P465 Uncharacterized protein8.9e-4929.12Show/hide
Query:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL
        R+T+ A +     GF  G   +   HLQFA+ TI F   E  SL  +  ++  F   SGL IN  KS++LGI + EE +S L  +  C++G+    YLG+
Subjt:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL

Query:  PL----------------CVN----------GENNGMHLLKRVILQLPI-------------------------EG---------------------GGV
        PL                C             +   + L++ V+  LP+                         EG                     GG+
Subjt:  PL----------------CVN----------GENNGMHLLKRVILQLPI-------------------------EG---------------------GGV

Query:  GIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEAS--WNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTF
        GI  ++L+NKSLL KW WR+  E  +LW  V+ +++G A   W+ K  +   P  K PW  I    +     + +K G G +I FW+  W++  P    F
Subjt:  GIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEAS--WNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTF

Query:  PLLYALSTRKEAPISD-FWDE-----YTACWNLGWRRNIKDDEINEWVDLSFRLTWVH-LTLESDVLFWKLEANGSFSTTS-----LTNGSFSTTSLTKH
        P L  +S  +  PI +   DE     +   WN  +RRN+ D E+   + L  ++  V  L++  D   WK + +G FS  S     ++N SF     TK 
Subjt:  PLLYALSTRKEAPISD-FWDE-----YTACWNLGWRRNIKDDEINEWVDLSFRLTWVH-LTLESDVLFWKLEANGSFSTTS-----LTNGSFSTTSLTKH

Query:  LAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL
        L               WK   P KV  F W L+   +N +DK+Q+R  ++ ISP WC+ CK S ES  HLF+ C F     + +L  FG S  +P  +
Subjt:  LAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALPNDL

A0A803P465 Uncharacterized protein1.0e-0733.96Show/hide
Query:  RRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEYWWLNTPFRGWPGHGFIEKLKGLKHIIARVLSESQRIRSHMEK--MDSGMYLINKL
        + L R  SDH  ++L      WGPSPFRF+N WL+H +     E WW      GW G  F+ KL+ +K  I    S+      H+ K  M+  + L++ L
Subjt:  RRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEYWWLNTPFRGWPGHGFIEKLKGLKHIIARVLSESQRIRSHMEK--MDSGMYLINKL

Query:  LHHYQW
            +W
Subjt:  LHHYQW

A5BSZ6 Reverse transcriptase domain-containing protein8.1e-5033.5Show/hide
Query:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL
        R+   A   N  +GF  G N     HLQFA+ TI FS   +  L  + +++ +F   SGL +N  KS I GINL +  LS L     CK       YLGL
Subjt:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL

Query:  PLCVNGENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLA
        PL  N +  G        +  P   GG+G+ N+  +N +LL KW WRY +E + LW  VI + +G  S      T    + +  W AI +          
Subjt:  PLCVNGENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEASWNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLA

Query:  YKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFST
        Y  GNG +I FW+  W    P    +P L+ +   K   IS          WNL +RRN+ D EI +   L   L  ++L+    D   W L ++G FS 
Subjt:  YKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISD-FWDEYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHLTLE-SDVLFWKLEANGSFST

Query:  TSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACT
         S              L+ S+   QN     VW  + P KV  F+W ++H+ +NTND LQ R  Y A+SP  CI+C    ES  HLF+ C+
Subjt:  TSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACT

A5BSZ6 Reverse transcriptase domain-containing protein3.5e-2143.09Show/hide
Query:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY
        MR F+SFI   EL D PL N  +TWS+ ++S +   +DRFL S E+   F       L R TSDH+ I++      WGP+PFRFEN+WLQH + K     
Subjt:  MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEY

Query:  WWLNTPFRGWPGHGFIEKLKGLK
        WW      GW GH F+ +L+ +K
Subjt:  WWLNTPFRGWPGHGFIEKLKGLK

A5BSZ6 Reverse transcriptase domain-containing protein1.4e-4929.42Show/hide
Query:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL
        R+   A + N   G   G++ +   HLQFA+ TI F   ++    N+  +++LF + SG+ IN  KS ILGIN   E L+++   + C++G     YLGL
Subjt:  RLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEASGLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGL

Query:  PL---------------------------CVN---------------------------------------------GENNGMHLLKRVILQLPIEGGGV
        PL                           C++                                              E    HL++ V +    E GG+
Subjt:  PL---------------------------CVN---------------------------------------------GENNGMHLLKRVILQLPIEGGGV

Query:  GIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEAS--WNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTF
        GI +++ +N++L AKW WR+  E  +LW  +I++K+G  S  W+ K +     + ++PW  I K          +  GNG KI FW+  W+     K  F
Subjt:  GIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEAS--WNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTF

Query:  PLLYALSTRKEAPISDFWD--EYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHL-TLESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQ
        P LY+LS RK   I+ F +  E    W+  +RRN+ + EI E V L   L  V L     D   W++E  GSFS  S  +   STTS+          P 
Subjt:  PLLYALSTRKEAPISDFWD--EYTACWNLGWRRNIKDDEINEWVDLSFRLTWVHL-TLESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQ

Query:  NSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALP
           Y ++WK K P K+ FF+W  ++  INT D +QRR   + +SP WC+ CK + E+  HLFI C+++      +L   G    +P
Subjt:  NSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIACTFASDFRKDILTTFGWSTALP

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.0e-1725.09Show/hide
Query:  ENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKF--GEASWNHKLVTTSHPNAKSPWAAIR-KTQNLIFYRLAYKT
        E    HL+K   +  P + GG+G+   K  N++L++K  WR ++E  +LW +V++ K+  GE   +  L+     +  S W +I    ++++ + + +  
Subjt:  ENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKF--GEASWNHKLVTTSHPNAKSPWAAIR-KTQNLIFYRLAYKT

Query:  GNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISDFWDEYTACW--NLGWRRNIKDDEINEWVDLSFRLTWVHL-TLESDVLFWKLEANGSFSTTS
        G+G++I FW   W++  P  +            E P           W    GW     D        L  R   + L T   D L WK   +G FS  S
Subjt:  GNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISDFWDEYTACW--NLGWRRNIKDDEINEWVDLSFRLTWVHL-TLESDVLFWKLEANGSFSTTS

Query:  LTNGSFSTTSLTKHLAHSNKVPQ---NSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIAC
                      +   ++VP+    S +N +WK + P++V  FLW + ++A+ T ++  RR L    +   C +CK  +ES  H+   C
Subjt:  LTNGSFSTTSLTKHLAHSNKVPQ---NSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIAC

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATGTTTTAATTCATTCATTGAGAATGCAGAGCTACAAGACATCCCGTTATCAAATGGTCTCTATACGTGGTCGGATTATCGAGATAGCCATATTCTCACTTTGAT
TGACAGATTCCTTGCCTCCATAGAATTCCTCACAAAATTCCAAAATGCTTCGGTTAGGAGACTCAATCGCCCGACCTCGGATCACTACCTCATCCTACTCTCTTTTGGCA
TGGCTAAATGGGGCCCTTCTCCCTTCAGATTTGAAAATGTCTGGTTGCAACATCAATCTCTTAAACCTTTGATAGAATACTGGTGGCTTAACACCCCATTCAGAGGGTGG
CCGGGTCATGGTTTTATTGAAAAGCTAAAAGGGCTGAAACATATTATTGCTAGAGTTCTCTCAGAAAGCCAAAGGATTCGGTCACACATGGAGAAAATGGATTCGGGGAT
GTATCTCATCAACAAACTTCTCCATCATTATCAATGGGCGACCCTGAGACTTACGTCACATGCTGCAAACAACAACTTTACTAAGGGATTTGATGACGGAAACAACTCAT
TGGCCACTCATCACCTACAATTTGCGAACGCCACCATTCTCTTCTCCCCATTTGAAGACTTCTCCCTCACAAACATGTTCAATATTATTAGGCTTTTTGAAGAGGCATCA
GGGCTTAACATTAACCCCCAAAAATCAGAAATCTTGGGAATAAATCTTGGAGAAGAGGAATTGTCATCTCTCGAATCTAAATTTGCTTGCAAAATGGGGACTTCGTTGTC
CACATACCTTGGATTACCCCTCTGTGTTAATGGGGAGAACAATGGAATGCACCTTCTCAAAAGGGTCATTTTACAACTACCAATCGAAGGGGGAGGCGTAGGGATTGCTA
ATATGAAACTGAAAAACAAAAGTCTCCTTGCAAAATGGAATTGGAGATACATTAAGGAGGATACAACTCTTTGGAGGATGGTAATTGAGGCAAAATTTGGGGAAGCATCT
TGGAACCACAAACTTGTCACTACATCTCACCCGAATGCAAAAAGTCCTTGGGCTGCCATTAGAAAGACACAAAATCTGATTTTTTACCGGCTTGCCTACAAAACTGGAAA
TGGCAGGAAAATTTCCTTTTGGGATCACCCATGGATGAATAGTGTGCCCTTTAAACAAACATTTCCTCTCCTTTACGCTTTATCAACAAGAAAGGAGGCTCCAATCTCTG
ATTTCTGGGATGAATATACAGCATGCTGGAATTTAGGATGGAGGCGAAATATTAAAGATGATGAGATAAATGAATGGGTAGACCTCAGTTTTCGACTCACATGGGTTCAT
TTAACATTAGAAAGTGATGTTTTATTCTGGAAACTAGAAGCAAATGGATCTTTTTCCACCACCTCCCTGACAAATGGATCTTTTTCCACCACCTCCCTCACAAAGCACCT
CGCACACAGCAACAAAGTGCCCCAAAATAGCCTCTACAACACTGTCTGGAAGGACAAGTGCCCAAAAAAAGTGAACTTCTTTCTTTGGGAGCTTAGTCACCGTGCCATCA
ATACCAATGATAAGTTACAAAGAAGACTCCTCTACATTGCTATTTCTCCACAGTGGTGCATCATTTGCAAGAACAGCTTGGAATCCCAACAACATCTCTTTATCGCCTGC
ACCTTTGCTTCTGATTTTCGGAAGGATATTCTCACTACTTTTGGTTGGTCCACAGCTTTGCCTAATGACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATGTTTTAATTCATTCATTGAGAATGCAGAGCTACAAGACATCCCGTTATCAAATGGTCTCTATACGTGGTCGGATTATCGAGATAGCCATATTCTCACTTTGAT
TGACAGATTCCTTGCCTCCATAGAATTCCTCACAAAATTCCAAAATGCTTCGGTTAGGAGACTCAATCGCCCGACCTCGGATCACTACCTCATCCTACTCTCTTTTGGCA
TGGCTAAATGGGGCCCTTCTCCCTTCAGATTTGAAAATGTCTGGTTGCAACATCAATCTCTTAAACCTTTGATAGAATACTGGTGGCTTAACACCCCATTCAGAGGGTGG
CCGGGTCATGGTTTTATTGAAAAGCTAAAAGGGCTGAAACATATTATTGCTAGAGTTCTCTCAGAAAGCCAAAGGATTCGGTCACACATGGAGAAAATGGATTCGGGGAT
GTATCTCATCAACAAACTTCTCCATCATTATCAATGGGCGACCCTGAGACTTACGTCACATGCTGCAAACAACAACTTTACTAAGGGATTTGATGACGGAAACAACTCAT
TGGCCACTCATCACCTACAATTTGCGAACGCCACCATTCTCTTCTCCCCATTTGAAGACTTCTCCCTCACAAACATGTTCAATATTATTAGGCTTTTTGAAGAGGCATCA
GGGCTTAACATTAACCCCCAAAAATCAGAAATCTTGGGAATAAATCTTGGAGAAGAGGAATTGTCATCTCTCGAATCTAAATTTGCTTGCAAAATGGGGACTTCGTTGTC
CACATACCTTGGATTACCCCTCTGTGTTAATGGGGAGAACAATGGAATGCACCTTCTCAAAAGGGTCATTTTACAACTACCAATCGAAGGGGGAGGCGTAGGGATTGCTA
ATATGAAACTGAAAAACAAAAGTCTCCTTGCAAAATGGAATTGGAGATACATTAAGGAGGATACAACTCTTTGGAGGATGGTAATTGAGGCAAAATTTGGGGAAGCATCT
TGGAACCACAAACTTGTCACTACATCTCACCCGAATGCAAAAAGTCCTTGGGCTGCCATTAGAAAGACACAAAATCTGATTTTTTACCGGCTTGCCTACAAAACTGGAAA
TGGCAGGAAAATTTCCTTTTGGGATCACCCATGGATGAATAGTGTGCCCTTTAAACAAACATTTCCTCTCCTTTACGCTTTATCAACAAGAAAGGAGGCTCCAATCTCTG
ATTTCTGGGATGAATATACAGCATGCTGGAATTTAGGATGGAGGCGAAATATTAAAGATGATGAGATAAATGAATGGGTAGACCTCAGTTTTCGACTCACATGGGTTCAT
TTAACATTAGAAAGTGATGTTTTATTCTGGAAACTAGAAGCAAATGGATCTTTTTCCACCACCTCCCTGACAAATGGATCTTTTTCCACCACCTCCCTCACAAAGCACCT
CGCACACAGCAACAAAGTGCCCCAAAATAGCCTCTACAACACTGTCTGGAAGGACAAGTGCCCAAAAAAAGTGAACTTCTTTCTTTGGGAGCTTAGTCACCGTGCCATCA
ATACCAATGATAAGTTACAAAGAAGACTCCTCTACATTGCTATTTCTCCACAGTGGTGCATCATTTGCAAGAACAGCTTGGAATCCCAACAACATCTCTTTATCGCCTGC
ACCTTTGCTTCTGATTTTCGGAAGGATATTCTCACTACTTTTGGTTGGTCCACAGCTTTGCCTAATGACCTCTAA
Protein sequenceShow/hide protein sequence
MRCFNSFIENAELQDIPLSNGLYTWSDYRDSHILTLIDRFLASIEFLTKFQNASVRRLNRPTSDHYLILLSFGMAKWGPSPFRFENVWLQHQSLKPLIEYWWLNTPFRGW
PGHGFIEKLKGLKHIIARVLSESQRIRSHMEKMDSGMYLINKLLHHYQWATLRLTSHAANNNFTKGFDDGNNSLATHHLQFANATILFSPFEDFSLTNMFNIIRLFEEAS
GLNINPQKSEILGINLGEEELSSLESKFACKMGTSLSTYLGLPLCVNGENNGMHLLKRVILQLPIEGGGVGIANMKLKNKSLLAKWNWRYIKEDTTLWRMVIEAKFGEAS
WNHKLVTTSHPNAKSPWAAIRKTQNLIFYRLAYKTGNGRKISFWDHPWMNSVPFKQTFPLLYALSTRKEAPISDFWDEYTACWNLGWRRNIKDDEINEWVDLSFRLTWVH
LTLESDVLFWKLEANGSFSTTSLTNGSFSTTSLTKHLAHSNKVPQNSLYNTVWKDKCPKKVNFFLWELSHRAINTNDKLQRRLLYIAISPQWCIICKNSLESQQHLFIAC
TFASDFRKDILTTFGWSTALPNDL