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Moc09g24690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g24690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr9:18521188..18531424
RNA-Seq ExpressionMoc09g24690
SyntenyMoc09g24690
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]4.4e-1354.26Show/hide
Query:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEFVGLSWKAELHVTNYAGGSLLLIDKEYGG
        L+LLHGNH+E A         V+ L +                RILGS+ESS   V SDYYDCQE VGLSWKAEL V NYAGGS LL DKE GG
Subjt:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEFVGLSWKAELHVTNYAGGSLLLIDKEYGG
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]4.2e-1675.76Show/hide
Query:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEF
        L+LL GNH+ LAGRTT DKVV +ALRV ELIDYLEIIG TTQCRILGSD SS   VASDYYD + F
Subjt:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEF
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like2.1e-1354.26Show/hide
Query:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEFVGLSWKAELHVTNYAGGSLLLIDKEYGG
        L+LLHGNH+E A         V+ L +                RILGS+ESS   V SDYYDCQE VGLSWKAEL V NYAGGS LL DKE GG
Subjt:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEFVGLSWKAELHVTNYAGGSLLLIDKEYGG
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein2.1e-1675.76Show/hide
Query:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEF
        L+LL GNH+ LAGRTT DKVV +ALRV ELIDYLEIIG TTQCRILGSD SS   VASDYYD + F
Subjt:  LKLLHGNHNELAGRTTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGTGGGGCCCTTTGTTCAAGTCCCAGAGTCAGCATTTAAGGGAACACTCATCTACTCCCCTAAAATCGGAGAGGAGTGAATTCCATCTTGTGAAGTTATGTTC
CCAGCTCCCCACTCGGTCTCGTCCCCAAAATGGCTTCGACCTCGACTTGGATCAGGTTCGATTTAACCGAATGATAAAATACAACAGACCTAGCTTTAACAACAGGCTTC
GACCTCGATCTTGGATCGAGTTCAATTTAATCGAACAAGATGCAACGGATCTGGCTTTAACACAGGCTTCGACCTTGACTTGGATCGGGAGACCTGCAAAAGAAAATACT
TCGACGCTCAAGTCAGAAAGAATACGAGCTGTATTTGAGAGAAAATACAATGTTTGCGTACCTGTGGTAGAGGCAAATGGTTTCTATATATCGACAAGGTCTCCGACAGG
ATTCCCGACAAGGTCGCAACAGCTCTTTAAGCTAAGCGTGAATCACGGCATGCTGTCGTGGAGTTTGTCGAAATCTGCGGTTGAGCAAGACACGTCTAGGTCGGTTAATG
CGAAGAATGAAAATAGGACCAAAGGAGATCTTGTGGATCAAGGTAGACTAGGCTTAAAGCAAGCTAGACTCAAGCTCCTACATGGTAATCACAACGAACTTGCGGGTCGT
ACCACTTTGGATAAGGTGGTTGTAATGGCTCTACGGGTACTGGAGCTAATAGATTACCTTGAAATAATTGGGAGAACAACTCAGTGTAGGATATTGGGATCAGATGAAAG
CTCTTTCAATTTCGTTGCCTCCGACTATTATGATTGTCAGGAGTTTGTTGGTCTTTCTTGGAAAGCTGAGCTTCATGTGACGAATTATGCTGGGGGAAGCCTTCTGTTGA
TTGACAAAGAGTATGGTGGACTTGAGTGGAGAATTTCATGCTCCTGCACAGGAACCGAAATTTCACGAAGGTCATACTACTCAGTCTCGGATCTAATCCTAAAAGTGGAG
TCGCCAGGCTGTCGCAACGTCATTGCGACGCGGAGAAGCCAACGTCATCCCCTGAAGGGTTTCTTTCGAGATAAGGGTTTGGAGTCGTCACCAATCATCTACGAGGTGTA
CCGGAATGGATCTATGGAAACATTCGTGGACAGGGGTCGTCGCCGGGGGATTGCACCACCGCTCATCACCTACCAGAAATGTTGTAGATCTGGTGCTGCCGAAGGAGTAG
CTCACTTCGAGGCGTCGCCGGCCATCGGGGTTTCGAGAGGAGCCGCGGTTACTCAACCTACAACTCACGTTGCCGCCGTGGGAGGAGAGCCACTGGGGGTTGATGGGTCA
CCGGCCGTCGTGGATATACTTGCCGGGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGTGGGGCCCTTTGTTCAAGTCCCAGAGTCAGCATTTAAGGGAACACTCATCTACTCCCCTAAAATCGGAGAGGAGTGAATTCCATCTTGTGAAGTTATGTTC
CCAGCTCCCCACTCGGTCTCGTCCCCAAAATGGCTTCGACCTCGACTTGGATCAGGTTCGATTTAACCGAATGATAAAATACAACAGACCTAGCTTTAACAACAGGCTTC
GACCTCGATCTTGGATCGAGTTCAATTTAATCGAACAAGATGCAACGGATCTGGCTTTAACACAGGCTTCGACCTTGACTTGGATCGGGAGACCTGCAAAAGAAAATACT
TCGACGCTCAAGTCAGAAAGAATACGAGCTGTATTTGAGAGAAAATACAATGTTTGCGTACCTGTGGTAGAGGCAAATGGTTTCTATATATCGACAAGGTCTCCGACAGG
ATTCCCGACAAGGTCGCAACAGCTCTTTAAGCTAAGCGTGAATCACGGCATGCTGTCGTGGAGTTTGTCGAAATCTGCGGTTGAGCAAGACACGTCTAGGTCGGTTAATG
CGAAGAATGAAAATAGGACCAAAGGAGATCTTGTGGATCAAGGTAGACTAGGCTTAAAGCAAGCTAGACTCAAGCTCCTACATGGTAATCACAACGAACTTGCGGGTCGT
ACCACTTTGGATAAGGTGGTTGTAATGGCTCTACGGGTACTGGAGCTAATAGATTACCTTGAAATAATTGGGAGAACAACTCAGTGTAGGATATTGGGATCAGATGAAAG
CTCTTTCAATTTCGTTGCCTCCGACTATTATGATTGTCAGGAGTTTGTTGGTCTTTCTTGGAAAGCTGAGCTTCATGTGACGAATTATGCTGGGGGAAGCCTTCTGTTGA
TTGACAAAGAGTATGGTGGACTTGAGTGGAGAATTTCATGCTCCTGCACAGGAACCGAAATTTCACGAAGGTCATACTACTCAGTCTCGGATCTAATCCTAAAAGTGGAG
TCGCCAGGCTGTCGCAACGTCATTGCGACGCGGAGAAGCCAACGTCATCCCCTGAAGGGTTTCTTTCGAGATAAGGGTTTGGAGTCGTCACCAATCATCTACGAGGTGTA
CCGGAATGGATCTATGGAAACATTCGTGGACAGGGGTCGTCGCCGGGGGATTGCACCACCGCTCATCACCTACCAGAAATGTTGTAGATCTGGTGCTGCCGAAGGAGTAG
CTCACTTCGAGGCGTCGCCGGCCATCGGGGTTTCGAGAGGAGCCGCGGTTACTCAACCTACAACTCACGTTGCCGCCGTGGGAGGAGAGCCACTGGGGGTTGATGGGTCA
CCGGCCGTCGTGGATATACTTGCCGGGATGTGA
Protein sequenceShow/hide protein sequence
MRGWGPLFKSQSQHLREHSSTPLKSERSEFHLVKLCSQLPTRSRPQNGFDLDLDQVRFNRMIKYNRPSFNNRLRPRSWIEFNLIEQDATDLALTQASTLTWIGRPAKENT
STLKSERIRAVFERKYNVCVPVVEANGFYISTRSPTGFPTRSQQLFKLSVNHGMLSWSLSKSAVEQDTSRSVNAKNENRTKGDLVDQGRLGLKQARLKLLHGNHNELAGR
TTLDKVVVMALRVLELIDYLEIIGRTTQCRILGSDESSFNFVASDYYDCQEFVGLSWKAELHVTNYAGGSLLLIDKEYGGLEWRISCSCTGTEISRRSYYSVSDLILKVE
SPGCRNVIATRRSQRHPLKGFFRDKGLESSPIIYEVYRNGSMETFVDRGRRRGIAPPLITYQKCCRSGAAEGVAHFEASPAIGVSRGAAVTQPTTHVAAVGGEPLGVDGS
PAVVDILAGM