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Moc09g24700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g24700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:18536958..18537672
RNA-Seq ExpressionMoc09g24700
SyntenyMoc09g24700
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032937.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4759.24Show/hide
Query:  MKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATTSKRKFHKGSSS
        MKE +SVREHVL+MM+HFN+AEVN   ++E +QV FI++SLPKS+  F+TNA +NKIE+NLTTL+NELQ +++L+K KG + EANVATT K KF +GSSS
Subjt:  MKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATTSKRKFHKGSSS

Query:  GSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKEKKLVLGDSLKKMRSLSGLD
         SK+GPS   + I+KK+    KGK P   KG +   KGKC+HY ENGHW RNCPKYL +K+AEKE + VLG    + RSLS L+
Subjt:  GSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKEKKLVLGDSLKKMRSLSGLD

KAA0040307.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-4860.8Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE +SVREHVL+MM+HFN+AEVN   ++E +QV FI++SL KS+  F+TNA +NKIE+NLTTLLNELQ +++L+K KG + E NVATT
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         K KF +GSSS SKSGP    + I+KK    GKGK P   KG + I KGKC+H  ENGHW +NCPKYLA+K+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

KAA0063246.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-4860.23Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE +SVREHVLN M+HFN+AEVN   ++E +QV FI++S PKS+  F+TNA +NKIE+NLTTLLNELQ +++L+K KG + EANVA+T
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         K KF +GSSS SK+ PS   + I+KK    GKGK P  TKG +   KGKC+H  ENGHW RNCPKYL +K+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

TYK11933.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-4760.23Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE + VREHVLNMM+HFN+AEVN   ++E +QV FI++SLPKS+  F+TNA ++KIE+NLTTLLNELQ +++L+  KG + EANVATT
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         KRKF +G SS SK GPS   + I+KK    GKG  P   KG +   KGKC+H  ENGHW RNCPKYLA+K+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

TYK31700.1 gag/pol protein [Cucumis melo var. makuwa]7.1e-4860.8Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE + VREHVL+MM+ FN+AEVND  ++E +QV FI++SLPKS+  F+TNA +NKIE+NLTTLLNELQ +++L+  KG   EANVA T
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         KRKF +GSSS +K+GP   K  I+KK    GKGK P   KG +   KGKC+HY +NGHW RNCPKYLAEK+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

TrEMBL top hitse value%identityAlignment
A0A5A7SUC7 Gag/pol protein7.7e-4859.24Show/hide
Query:  MKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATTSKRKFHKGSSS
        MKE +SVREHVL+MM+HFN+AEVN   ++E +QV FI++SLPKS+  F+TNA +NKIE+NLTTL+NELQ +++L+K KG + EANVATT K KF +GSSS
Subjt:  MKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATTSKRKFHKGSSS

Query:  GSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKEKKLVLGDSLKKMRSLSGLD
         SK+GPS   + I+KK+    KGK P   KG +   KGKC+HY ENGHW RNCPKYL +K+AEKE + VLG    + RSLS L+
Subjt:  GSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKEKKLVLGDSLKKMRSLSGLD

A0A5A7TFI0 Gag/pol protein2.0e-4860.8Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE +SVREHVL+MM+HFN+AEVN   ++E +QV FI++SL KS+  F+TNA +NKIE+NLTTLLNELQ +++L+K KG + E NVATT
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         K KF +GSSS SKSGP    + I+KK    GKGK P   KG + I KGKC+H  ENGHW +NCPKYLA+K+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

A0A5A7V9X9 Gag/pol protein2.6e-4860.23Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE +SVREHVLN M+HFN+AEVN   ++E +QV FI++S PKS+  F+TNA +NKIE+NLTTLLNELQ +++L+K KG + EANVA+T
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         K KF +GSSS SK+ PS   + I+KK    GKGK P  TKG +   KGKC+H  ENGHW RNCPKYL +K+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

A0A5D3CJ27 Gag/pol protein1.0e-4760.23Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE + VREHVLNMM+HFN+AEVN   ++E +QV FI++SLPKS+  F+TNA ++KIE+NLTTLLNELQ +++L+  KG + EANVATT
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         KRKF +G SS SK GPS   + I+KK    GKG  P   KG +   KGKC+H  ENGHW RNCPKYLA+K+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

A0A5D3E7W3 Gag/pol protein3.5e-4860.8Show/hide
Query:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT
        H+AIKY+Y+  MKE + VREHVL+MM+ FN+AEVND  ++E +QV FI++SLPKS+  F+TNA +NKIE+NLTTLLNELQ +++L+  KG   EANVA T
Subjt:  HDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATT

Query:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE
         KRKF +GSSS +K+GP   K  I+KK    GKGK P   KG +   KGKC+HY +NGHW RNCPKYLAEK+AEKE
Subjt:  SKRKFHKGSSSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGATGCGATTAAGTATGTTTACAGCTGCATAATGAAGGAAAGATCTTCCGTAAGAGAGCATGTTTTGAACATGATGGTTCACTTCAATGTTGCAGAAGTGAACGA
CACAATCATGAACGAAATAAGTCAGGTTGGATTCATCATGCAATCTCTTCCGAAGAGTTATTTTCAATTCAAAACGAATGCTATGATGAATAAGATTGAATACAATCTGA
CAACCCTTCTTAATGAACTCCAAATTTACGAATCTTTGTCGAAAAACAAAGGTTCTGATGCTGAGGCAAATGTTGCTACTACCTCAAAGAGGAAGTTCCACAAGGGATCT
TCCTCTGGGAGTAAATCTGGACCTTCTTATCAGAAGAAAGGAATTCAAAAGAAGAAGAAGGATAATGGGAAGGGGAAGGCTCCAGCCGCGACAAAAGGCATGGAAAAGAT
TGTTAAAGGAAAATGTTTCCATTACAATGAAAATGGACACTGGAAAAGAAATTGCCCCAAATACCTCGCTGAGAAAAGAGCTGAGAAGGAAAAGAAACTAGTTCTTGGAG
ACAGTTTGAAGAAGATGAGGTCACTTTCTGGGTTGGATAAGGGGAGCTCATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGATGCGATTAAGTATGTTTACAGCTGCATAATGAAGGAAAGATCTTCCGTAAGAGAGCATGTTTTGAACATGATGGTTCACTTCAATGTTGCAGAAGTGAACGA
CACAATCATGAACGAAATAAGTCAGGTTGGATTCATCATGCAATCTCTTCCGAAGAGTTATTTTCAATTCAAAACGAATGCTATGATGAATAAGATTGAATACAATCTGA
CAACCCTTCTTAATGAACTCCAAATTTACGAATCTTTGTCGAAAAACAAAGGTTCTGATGCTGAGGCAAATGTTGCTACTACCTCAAAGAGGAAGTTCCACAAGGGATCT
TCCTCTGGGAGTAAATCTGGACCTTCTTATCAGAAGAAAGGAATTCAAAAGAAGAAGAAGGATAATGGGAAGGGGAAGGCTCCAGCCGCGACAAAAGGCATGGAAAAGAT
TGTTAAAGGAAAATGTTTCCATTACAATGAAAATGGACACTGGAAAAGAAATTGCCCCAAATACCTCGCTGAGAAAAGAGCTGAGAAGGAAAAGAAACTAGTTCTTGGAG
ACAGTTTGAAGAAGATGAGGTCACTTTCTGGGTTGGATAAGGGGAGCTCATCTTAG
Protein sequenceShow/hide protein sequence
MHDAIKYVYSCIMKERSSVREHVLNMMVHFNVAEVNDTIMNEISQVGFIMQSLPKSYFQFKTNAMMNKIEYNLTTLLNELQIYESLSKNKGSDAEANVATTSKRKFHKGS
SSGSKSGPSYQKKGIQKKKKDNGKGKAPAATKGMEKIVKGKCFHYNENGHWKRNCPKYLAEKRAEKEKKLVLGDSLKKMRSLSGLDKGSSS