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Moc09g24770 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g24770
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:18560041..18560882
RNA-Seq ExpressionMoc09g24770
SyntenyMoc09g24770
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036934.1 uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]9.1e-10066.07Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        M FFL+GE+LYKRNHDMVLLRCVD +EA  IM ++++GICG HANGHMM+RQILR+GYY  TMESDCIKYAREC KCQIY DKIH  AS LH+LSAPWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        S+WG+D+I PI+PKA+NG +FILVAIDYFTKW+EAASY NVTR                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+I+EKMTITYKDWHEMLPFALHGYRT+VRTST ATPFSLVYGMEVVLPLEVEIPSLRVLME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]1.1e-10066.79Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        M FFL+GE+LYKRNHDMVLLRCVD +EA  IM ++++GICG HANGHMM+RQILR+GYY  TMESDCIKYAREC KCQIY DKIH  ASSLH+LSAPWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        S+WG+D+I PI+PKA+NG +FILVAIDYFTKW+EAASY NVTR                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMTITYKDWHEMLPFALHGYRT+VRTST ATPFSLVYGMEVVLPLEVEIPSLRVLME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.3e-10265.71Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        +KFFLNGE+LYKRNHDMVLLRCV+ ++AN IM+E+H+G+CG HANGHMM+RQILR GYY LT+E+DCIKYAR+CHKCQIY+DK HAPAS LH L+APWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        SMWG+D+I PIEPKA+NG QFILVAIDYFTKWVEAASY++VT+                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMT+TY+DWHEMLPFALHGYRT+VRTST ATPFSLVYGMEVVLP+EVEIPSLRV+ME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]2.0e-9964.64Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        MKFFLN E+LYKRNHDMVLLRCV+ ++AN IM+EVH+ +CG HANGHM++RQILR GYY LT+E+DCIKYAR+CHKCQIY+DK HAPAS LH L+APWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        SMWG+D+I PIEPKA+NG +FILVAIDYFTKWVEAASY++VT+                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMT+TY+DWHEMLPFALHGYRT+VRTST ATPFSLVYGME VLP+EVEIPSLRV+ME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.0e-9964.64Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        MKFFLNGE+LYKRNHDMVLLRCV+ ++AN IM+EVH+G+CG HANGHMM+RQILR GYY LT+ +DCIKYAR+CHKCQIY+DK HAPAS LH L+APWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        SMWG+D+I PIEPKA+NG +FILVAIDYFTKWVEAAS ++VT+                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMT+TY+DWHEMLPFALHGYRT+VRTST ATPFSLVYGM+ VLP+EVEIPSLRV+ME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H4.4e-10066.07Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        M FFL+GE+LYKRNHDMVLLRCVD +EA  IM ++++GICG HANGHMM+RQILR+GYY  TMESDCIKYAREC KCQIY DKIH  AS LH+LSAPWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        S+WG+D+I PI+PKA+NG +FILVAIDYFTKW+EAASY NVTR                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+I+EKMTITYKDWHEMLPFALHGYRT+VRTST ATPFSLVYGMEVVLPLEVEIPSLRVLME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

A0A5A7T1X2 Ribonuclease H5.2e-10166.79Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        M FFL+GE+LYKRNHDMVLLRCVD +EA  IM ++++GICG HANGHMM+RQILR+GYY  TMESDCIKYAREC KCQIY DKIH  ASSLH+LSAPWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        S+WG+D+I PI+PKA+NG +FILVAIDYFTKW+EAASY NVTR                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMTITYKDWHEMLPFALHGYRT+VRTST ATPFSLVYGMEVVLPLEVEIPSLRVLME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

A0A6J1D099 Ribonuclease H1.6e-10265.71Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        +KFFLNGE+LYKRNHDMVLLRCV+ ++AN IM+E+H+G+CG HANGHMM+RQILR GYY LT+E+DCIKYAR+CHKCQIY+DK HAPAS LH L+APWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        SMWG+D+I PIEPKA+NG QFILVAIDYFTKWVEAASY++VT+                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMT+TY+DWHEMLPFALHGYRT+VRTST ATPFSLVYGMEVVLP+EVEIPSLRV+ME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

A0A6J1D7C7 Ribonuclease H9.8e-10064.64Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        MKFFLN E+LYKRNHDMVLLRCV+ ++AN IM+EVH+ +CG HANGHM++RQILR GYY LT+E+DCIKYAR+CHKCQIY+DK HAPAS LH L+APWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        SMWG+D+I PIEPKA+NG +FILVAIDYFTKWVEAASY++VT+                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMT+TY+DWHEMLPFALHGYRT+VRTST ATPFSLVYGME VLP+EVEIPSLRV+ME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

A0A6J1E2J7 Ribonuclease H9.8e-10064.64Show/hide
Query:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF
        MKFFLNGE+LYKRNHDMVLLRCV+ ++AN IM+EVH+G+CG HANGHMM+RQILR GYY LT+ +DCIKYAR+CHKCQIY+DK HAPAS LH L+APWPF
Subjt:  MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPF

Query:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG
        SMWG+D+I PIEPKA+NG +FILVAIDYFTKWVEAAS ++VT+                                                      MNG
Subjt:  SMWGIDIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTR-----------------------------------------------------NMNG

Query:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL
        AVEAANKNIK+IVEKMT+TY+DWHEMLPFALHGYRT+VRTST ATPFSLVYGM+ VLP+EVEIPSLRV+ME KL+E+EW+
Subjt:  AVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEIPSLRVLMEVKLEESEWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCTTTCTGAATGGAGAAATGTTATATAAAAGGAATCATGATATGGTCCTCCTTAGATGTGTTGATGCAAAAGAAGCAAACAATATTATGAAGGAAGTT
CATGATGGTATTTGTGGTATCCACGCCAATGGCCATATGATGTCTAGACAAATCCTTCGCACTGGATACTACTGTCTAACAATGGAGTCAGATTGCATCAAGTAC
GCTAGAGAATGCCATAAGTGTCAAATATATGCAGACAAGATTCATGCTCCAGCATCCTCTTTACACGTCTTGTCAGCACCATGGCCCTTTTCAATGTGGGGCATA
GATATTATTTGTCCGATCGAACCCAAAGCTACTAATGGGCAGCAATTTATTCTCGTGGCTATTGACTATTTCACAAAGTGGGTTGAAGCAGCTTCATACCAGAAT
GTCACAAGGAATATGAATGGTGCAGTGGAGGCAGCTAATAAAAATATTAAAAAGATCGTAGAAAAGATGACAATTACGTACAAGGATTGGCACGAAATGCTTCCT
TTCGCATTACATGGATATCGTACAGCGGTTCGCACATCGACCAGGGCAACCCCATTTTCTTTAGTGTATGGTATGGAAGTTGTCCTCCCATTGGAGGTGGAAATA
CCATCTCTAAGAGTTCTGATGGAAGTAAAGTTGGAAGAATCTGAATGGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCTTTCTGAATGGAGAAATGTTATATAAAAGGAATCATGATATGGTCCTCCTTAGATGTGTTGATGCAAAAGAAGCAAACAATATTATGAAGGAAGTT
CATGATGGTATTTGTGGTATCCACGCCAATGGCCATATGATGTCTAGACAAATCCTTCGCACTGGATACTACTGTCTAACAATGGAGTCAGATTGCATCAAGTAC
GCTAGAGAATGCCATAAGTGTCAAATATATGCAGACAAGATTCATGCTCCAGCATCCTCTTTACACGTCTTGTCAGCACCATGGCCCTTTTCAATGTGGGGCATA
GATATTATTTGTCCGATCGAACCCAAAGCTACTAATGGGCAGCAATTTATTCTCGTGGCTATTGACTATTTCACAAAGTGGGTTGAAGCAGCTTCATACCAGAAT
GTCACAAGGAATATGAATGGTGCAGTGGAGGCAGCTAATAAAAATATTAAAAAGATCGTAGAAAAGATGACAATTACGTACAAGGATTGGCACGAAATGCTTCCT
TTCGCATTACATGGATATCGTACAGCGGTTCGCACATCGACCAGGGCAACCCCATTTTCTTTAGTGTATGGTATGGAAGTTGTCCTCCCATTGGAGGTGGAAATA
CCATCTCTAAGAGTTCTGATGGAAGTAAAGTTGGAAGAATCTGAATGGCTTTAA
Protein sequenceShow/hide protein sequence
MKFFLNGEMLYKRNHDMVLLRCVDAKEANNIMKEVHDGICGIHANGHMMSRQILRTGYYCLTMESDCIKYARECHKCQIYADKIHAPASSLHVLSAPWPFSMWGI
DIICPIEPKATNGQQFILVAIDYFTKWVEAASYQNVTRNMNGAVEAANKNIKKIVEKMTITYKDWHEMLPFALHGYRTAVRTSTRATPFSLVYGMEVVLPLEVEI
PSLRVLMEVKLEESEWL