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Moc09g24940 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g24940
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:18651519..18654267
RNA-Seq ExpressionMoc09g24940
SyntenyMoc09g24940
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153199.1 uncharacterized protein LOC111020755 [Momordica charantia]1.7e-1378Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKY++DPSHVLDPEPLQLD +LC EEVP+++LARETK+LRNR I LVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
XP_022155143.1 uncharacterized protein LOC111022284 [Momordica charantia]9.8e-1484Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKYV+DPSHVLD EPLQ+D TLC +EVPIEI+ARETK+LRNRAIDLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
XP_022155349.1 uncharacterized protein LOC111022491 [Momordica charantia]5.2e-1586Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKYV+DPSHVLDPEPLQLD +LC EEVPIEILARETK+LRNR +DLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
XP_022158211.1 uncharacterized protein LOC111024747 [Momordica charantia]2.0e-1486Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        +LRKYVYDP HVLDPEPL LDGTL  EEVP+EILA+ETKMLRNRAIDLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
XP_022158843.1 uncharacterized protein LOC111025308 [Momordica charantia]2.0e-1486Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKYV+DP HVLDPEPLQLD TLC  EVPIEILA+ETK+LRNRAIDLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
TrEMBL top hitse value%identityAlignment
A0A6J1DIC9 uncharacterized protein LOC1110207558.1e-1478Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKY++DPSHVLDPEPLQLD +LC EEVP+++LARETK+LRNR I LVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
A0A6J1DM68 uncharacterized protein LOC1110222844.7e-1484Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKYV+DPSHVLD EPLQ+D TLC +EVPIEI+ARETK+LRNRAIDLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
A0A6J1DQ06 uncharacterized protein LOC1110224912.5e-1586Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKYV+DPSHVLDPEPLQLD +LC EEVPIEILARETK+LRNR +DLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
A0A6J1DX78 uncharacterized protein LOC1110253089.5e-1586Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        MLRKYV+DP HVLDPEPLQLD TLC  EVPIEILA+ETK+LRNRAIDLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
A0A6J1E0B0 uncharacterized protein LOC1110247479.5e-1586Show/hide
Query:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
        +LRKYVYDP HVLDPEPL LDGTL  EEVP+EILA+ETKMLRNRAIDLVK
Subjt:  MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGGAAGTACGTCTATGACCCCTCTCATGTCTTGGATCCCGAACCGTTACAGTTAGATGGAACCTTGTGCTGTGAAGAGGTACCCATTGAGATCTTAGCAAGGGA
GACCAAGATGCTGAGAAATCGGGCTATTGACTTGGTGAAGGGAGCCCTAGACCTTCCCTTCTTCTGCCTCTCGTTTGGAGCCGCCAGCCCCCTTCCCCCCTATCATCCTC
TTGTTCGCGAACGAGCAGCACGACCTGTCCTTCACCGGCGATCGCTCCCACCGCGACGCACCACCTTCCCGTCGAGCAGCAGCAGGTGGCGCAGCGACAAGCAGGCGCGC
GATCGTTCCGCGTACGTCGGCGGCTGTGGTGGTCGTTGGGCGACGTTTCAACTAAATAGAGGTGACCCACGACTTGTACCACCTAGACTCGGACCCGTGCTCCTCCTGCG
GGGTCCAGCAACATCAGTGACGGATTCAGGGCGTTTTCACTGCTACCAAACGCAAACAGCAGTGTTTTTGGTAGTGTTTGGCGCTTACCTATATCGAAACATGAGATACA
CAAATGGACCAGCTTCGGGGCAAGTGGTCGAGAATGTTACATCAGTACTGGTTGTCGAGGCTCCGAGTACAAAAGGTGCAGATCGCGTCCTTGGCCATGGTGATGACGTG
GAGGAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGGAAGTACGTCTATGACCCCTCTCATGTCTTGGATCCCGAACCGTTACAGTTAGATGGAACCTTGTGCTGTGAAGAGGTACCCATTGAGATCTTAGCAAGGGA
GACCAAGATGCTGAGAAATCGGGCTATTGACTTGGTGAAGGGAGCCCTAGACCTTCCCTTCTTCTGCCTCTCGTTTGGAGCCGCCAGCCCCCTTCCCCCCTATCATCCTC
TTGTTCGCGAACGAGCAGCACGACCTGTCCTTCACCGGCGATCGCTCCCACCGCGACGCACCACCTTCCCGTCGAGCAGCAGCAGGTGGCGCAGCGACAAGCAGGCGCGC
GATCGTTCCGCGTACGTCGGCGGCTGTGGTGGTCGTTGGGCGACGTTTCAACTAAATAGAGGTGACCCACGACTTGTACCACCTAGACTCGGACCCGTGCTCCTCCTGCG
GGGTCCAGCAACATCAGTGACGGATTCAGGGCGTTTTCACTGCTACCAAACGCAAACAGCAGTGTTTTTGGTAGTGTTTGGCGCTTACCTATATCGAAACATGAGATACA
CAAATGGACCAGCTTCGGGGCAAGTGGTCGAGAATGTTACATCAGTACTGGTTGTCGAGGCTCCGAGTACAAAAGGTGCAGATCGCGTCCTTGGCCATGGTGATGACGTG
GAGGAGGCTTGA
Protein sequenceShow/hide protein sequence
MLRKYVYDPSHVLDPEPLQLDGTLCCEEVPIEILARETKMLRNRAIDLVKGALDLPFFCLSFGAASPLPPYHPLVRERAARPVLHRRSLPPRRTTFPSSSSRWRSDKQAR
DRSAYVGGCGGRWATFQLNRGDPRLVPPRLGPVLLLRGPATSVTDSGRFHCYQTQTAVFLVVFGAYLYRNMRYTNGPASGQVVENVTSVLVVEAPSTKGADRVLGHGDDV
EEA