; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g24980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g24980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:18687030..18700587
RNA-Seq ExpressionMoc09g24980
SyntenyMoc09g24980
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-1042.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-1042.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-1042.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-1042.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-1042.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.7e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

A0A5A7SMH8 Gag/pol protein6.2e-1142.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

A0A5A7SMH8 Gag/pol protein1.7e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

A0A5A7TWB9 Gag/pol protein6.2e-1142.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

A0A5A7TWB9 Gag/pol protein1.7e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

A0A5A7V4M1 Gag/pol protein6.2e-1142.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

A0A5A7V4M1 Gag/pol protein1.7e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

A0A5D3CPJ6 Gag/pol protein6.2e-1142.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

A0A5D3CPJ6 Gag/pol protein1.7e-8559.74Show/hide
Query:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI
        N + + R  Y+RW     KA+  ILAS+S+VLAKKH+  + A+EI DSLQ MFGQ S Q +H+ALK+IYN R+ EG+SV+EHVLN++V FNV E NG VI
Subjt:  NMSYSSRNVYDRWI----KAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHVLNLIVRFNVVESNGIVI

Query:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST
        DE SQ SFILESL +SFL F SNAVMNK+ YT TTLLNELQT++                            TKS PSSS +K +K KK  G+G+K +  
Subjt:  DEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQ----------------------------TKSAPSSSRSKTFKIKKATGKGSKPDST

Query:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA
        AAK  K   A KG CFHCN++GHWKRNCPKYL EKKKA +GK+DLLVLETCLVENDDS W++DS ATNHVCSSFQ +SSWRQLE GEMT++VGTG V+ A
Subjt:  AAKKGKAKAANKGKCFHCNEDGHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILA

Query:  MAV
        +AV
Subjt:  MAV

A0A5D3CSZ6 Gag/pol protein6.2e-1142.98Show/hide
Query:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE
        +V+NE+S+E T  ST VV++     RVV   S S ++H PQ  R PRRSGRV + P RY+ LT+T  VI D D++DP+T+K+A ED     D+ I   + 
Subjt:  VVINEISEEATNTSTIVVDQAGISARVVDEASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHE

Query:  VQESSYVNENEDKDGKPHKMK
          ES Y N   D   +P  +K
Subjt:  VQESSYVNENEDKDGKPHKMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTGCGTGTCGTCCTGGTGCAACCATCCCTACGGAGAGTCGAAACCAAGGCAAACTCAAGAAATGGATAAGGGTTTCTTAGGTTATAGGAATATGAGTTATTCTAG
TCGCAACGTCTATGACCGCTGGATCAAGGCCAAGGTCAACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGCACAAGGACACGGTAATCGCTAAGGAGATCGCAG
ACTCACTACAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTTATTTACAACTTCCGCATAAAGGAGGGCTCCTCAGTGCAAGAACACGTT
CTCAACCTGATTGTCCGCTTCAACGTGGTAGAGTCGAACGGGATCGTCATAGACGAGCAGAGTCAGGACAGCTTCATTCTGGAATCTCTTTCGAAAAGTTTCCTGGCATT
CTGCAGCAATGCAGTTATGAATAAGCTGGAGTACACTCGTACCACGCTCTTAAACGAGCTGCAGACCTACCAAACCAAGTCAGCGCCATCTTCTTCTAGAAGTAAGACTT
TCAAGATTAAGAAGGCTACTGGTAAGGGATCTAAACCTGACTCCACTGCTGCCAAGAAAGGTAAGGCCAAGGCTGCTAACAAAGGAAAATGTTTCCACTGCAACGAAGAT
GGGCATTGGAAGCGCAATTGCCCGAAATACCTGGTCGAGAAGAAGAAAGCCAACGAAGGTAAATTTGATTTACTTGTTTTAGAAACATGTTTAGTGGAGAATGATGACTC
TACCTGGATGTTAGATTCAGAAGCCACTAATCACGTTTGTTCTTCGTTTCAGAGAATGAGTTCCTGGAGGCAGCTTGAAGCCGGAGAGATGACTCTCAAGGTCGGAACGG
GAGAGGTCATCTTAGCTATGGCGGTAGTGATAAACGAGATTTCTGAAGAGGCTACAAACACGTCAACAATAGTTGTTGATCAAGCTGGCATTTCGGCAAGAGTTGTTGAT
GAAGCCAGCATGTCACCTCAGTCACATCCACCTCAAGAATTTAGGGTGCCTCGACGTAGTGGGAGGGTTGTGTCACAACCCGACCGCTACGTGGGTTTAACCAAAACCCA
AGTTGTCATACCTGATGACGACGTCAAGGATCCAATGACCTACAAACAGGCAAAGGAAGATACTCCCAGTTTGGCTGATGATGTGATCATATTTGGGCATGAAGTCCAAG
AATCAAGCTACGTCAATGAAAATGAAGATAAAGATGGGAAGCCCCATAAAATGAAGATGGATATCAAGGAGGATCTAAGAAAAATGTTACGATTGGACAATAAGCCCACC
GCACGCATTGCGTGCCCCTACCGCGCTAACCTCACAGCACCCTACCCGTGCGCCAGCCTCTGCCACAGGCCTGCATCCACTAAGCGCCTGACAAGGCGTAGCCCTACATG
CACCCGCCAGCACGCATGCTTATCGGATGCCTGCCCATCACCTCGCACACCCGTGCGCCCCACACACCCGCCTACTGCCTCAGTTGCATGCGCCCTCCACCATTCATGCC
CCTCCACACACATCCCAATTGCGCGCATTACCGCCCACGCTGCACAGCCCTTGCCTGTATGCCCCCTACGACGCACGCCCTTGTTGCGTGCCCTGCCCATGCGCGCGCGC
CTTCCCCCAGCGCCAGCTTCCTTGCGCGCTTTCGTATTTGACCCCTCGAAGCATGCTTGTTTGATTGGTCATCAAACTCGTGGAGTGTTTCTAGCCTCGAGCATAGTGAG
TATTCTGTCTGCTCAAGGTAACGACTGCAAAGGTGATAAGGCCAAGAGCCTCAAGATAAGTGCAAATGAGGTTGATTATAAATTGCCTTACAATGATATGCATGATGATC
ATATTTTACTTGATTGCAATGACTTAAATGATTCTATGCCTATGGTTGAAAAGAAATGTAGTGAACTTGAAAGTTGTAAGACCATGCATGATATTACTATTGATAACAAG
AAAATGCATGATGTTTTGCCACTTGCCGAGGAGGAGATTGCTAAGAAGGTACCTTGTGATTCTATGCACCACATTCCTAGTCCTTTAGTTACTGGAATTTTTTGTGATTA
TGAAGTATCCATGCTTGATCCACCAATTCATGAAGATTCACAACTTGAATGTGAGTTGGAAAGTATGAGAGAAGGAAAAGGAGAGTTGAAAGAAAGTAGCTATGGAAAGA
AAAAAGAGAAAAAGAGAATGGTCCACACTATCGTACCTCACAAGCCAAATCTTAAGAGACTACTGGAGAATGATCCTTACCTTCAAGCTATTATGTTTTATCCTAGAGCT
TGTATTGTTTTGAGATTTTTGCAGGAACTTTCAATTCTTAACCTTAATCATGGCCGGACAAAGGTAGAGTTGAAAGCTATGGAGAGTCAAGATAACATGGAGCTTAATGG
ACTCCCCCTACCATCTTCACATGATCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCTGCGTGTCGTCCTGGTGCAACCATCCCTACGGAGAGTCGAAACCAAGGCAAACTCAAGAAATGGATAAGGGTTTCTTAGGTTATAGGAATATGAGTTATTCTAG
TCGCAACGTCTATGACCGCTGGATCAAGGCCAAGGTCAACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGCACAAGGACACGGTAATCGCTAAGGAGATCGCAG
ACTCACTACAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTTATTTACAACTTCCGCATAAAGGAGGGCTCCTCAGTGCAAGAACACGTT
CTCAACCTGATTGTCCGCTTCAACGTGGTAGAGTCGAACGGGATCGTCATAGACGAGCAGAGTCAGGACAGCTTCATTCTGGAATCTCTTTCGAAAAGTTTCCTGGCATT
CTGCAGCAATGCAGTTATGAATAAGCTGGAGTACACTCGTACCACGCTCTTAAACGAGCTGCAGACCTACCAAACCAAGTCAGCGCCATCTTCTTCTAGAAGTAAGACTT
TCAAGATTAAGAAGGCTACTGGTAAGGGATCTAAACCTGACTCCACTGCTGCCAAGAAAGGTAAGGCCAAGGCTGCTAACAAAGGAAAATGTTTCCACTGCAACGAAGAT
GGGCATTGGAAGCGCAATTGCCCGAAATACCTGGTCGAGAAGAAGAAAGCCAACGAAGGTAAATTTGATTTACTTGTTTTAGAAACATGTTTAGTGGAGAATGATGACTC
TACCTGGATGTTAGATTCAGAAGCCACTAATCACGTTTGTTCTTCGTTTCAGAGAATGAGTTCCTGGAGGCAGCTTGAAGCCGGAGAGATGACTCTCAAGGTCGGAACGG
GAGAGGTCATCTTAGCTATGGCGGTAGTGATAAACGAGATTTCTGAAGAGGCTACAAACACGTCAACAATAGTTGTTGATCAAGCTGGCATTTCGGCAAGAGTTGTTGAT
GAAGCCAGCATGTCACCTCAGTCACATCCACCTCAAGAATTTAGGGTGCCTCGACGTAGTGGGAGGGTTGTGTCACAACCCGACCGCTACGTGGGTTTAACCAAAACCCA
AGTTGTCATACCTGATGACGACGTCAAGGATCCAATGACCTACAAACAGGCAAAGGAAGATACTCCCAGTTTGGCTGATGATGTGATCATATTTGGGCATGAAGTCCAAG
AATCAAGCTACGTCAATGAAAATGAAGATAAAGATGGGAAGCCCCATAAAATGAAGATGGATATCAAGGAGGATCTAAGAAAAATGTTACGATTGGACAATAAGCCCACC
GCACGCATTGCGTGCCCCTACCGCGCTAACCTCACAGCACCCTACCCGTGCGCCAGCCTCTGCCACAGGCCTGCATCCACTAAGCGCCTGACAAGGCGTAGCCCTACATG
CACCCGCCAGCACGCATGCTTATCGGATGCCTGCCCATCACCTCGCACACCCGTGCGCCCCACACACCCGCCTACTGCCTCAGTTGCATGCGCCCTCCACCATTCATGCC
CCTCCACACACATCCCAATTGCGCGCATTACCGCCCACGCTGCACAGCCCTTGCCTGTATGCCCCCTACGACGCACGCCCTTGTTGCGTGCCCTGCCCATGCGCGCGCGC
CTTCCCCCAGCGCCAGCTTCCTTGCGCGCTTTCGTATTTGACCCCTCGAAGCATGCTTGTTTGATTGGTCATCAAACTCGTGGAGTGTTTCTAGCCTCGAGCATAGTGAG
TATTCTGTCTGCTCAAGGTAACGACTGCAAAGGTGATAAGGCCAAGAGCCTCAAGATAAGTGCAAATGAGGTTGATTATAAATTGCCTTACAATGATATGCATGATGATC
ATATTTTACTTGATTGCAATGACTTAAATGATTCTATGCCTATGGTTGAAAAGAAATGTAGTGAACTTGAAAGTTGTAAGACCATGCATGATATTACTATTGATAACAAG
AAAATGCATGATGTTTTGCCACTTGCCGAGGAGGAGATTGCTAAGAAGGTACCTTGTGATTCTATGCACCACATTCCTAGTCCTTTAGTTACTGGAATTTTTTGTGATTA
TGAAGTATCCATGCTTGATCCACCAATTCATGAAGATTCACAACTTGAATGTGAGTTGGAAAGTATGAGAGAAGGAAAAGGAGAGTTGAAAGAAAGTAGCTATGGAAAGA
AAAAAGAGAAAAAGAGAATGGTCCACACTATCGTACCTCACAAGCCAAATCTTAAGAGACTACTGGAGAATGATCCTTACCTTCAAGCTATTATGTTTTATCCTAGAGCT
TGTATTGTTTTGAGATTTTTGCAGGAACTTTCAATTCTTAACCTTAATCATGGCCGGACAAAGGTAGAGTTGAAAGCTATGGAGAGTCAAGATAACATGGAGCTTAATGG
ACTCCCCCTACCATCTTCACATGATCTTTAG
Protein sequenceShow/hide protein sequence
MTCVSSWCNHPYGESKPRQTQEMDKGFLGYRNMSYSSRNVYDRWIKAKVNILASISDVLAKKHKDTVIAKEIADSLQSMFGQPSSQARHEALKFIYNFRIKEGSSVQEHV
LNLIVRFNVVESNGIVIDEQSQDSFILESLSKSFLAFCSNAVMNKLEYTRTTLLNELQTYQTKSAPSSSRSKTFKIKKATGKGSKPDSTAAKKGKAKAANKGKCFHCNED
GHWKRNCPKYLVEKKKANEGKFDLLVLETCLVENDDSTWMLDSEATNHVCSSFQRMSSWRQLEAGEMTLKVGTGEVILAMAVVINEISEEATNTSTIVVDQAGISARVVD
EASMSPQSHPPQEFRVPRRSGRVVSQPDRYVGLTKTQVVIPDDDVKDPMTYKQAKEDTPSLADDVIIFGHEVQESSYVNENEDKDGKPHKMKMDIKEDLRKMLRLDNKPT
ARIACPYRANLTAPYPCASLCHRPASTKRLTRRSPTCTRQHACLSDACPSPRTPVRPTHPPTASVACALHHSCPSTHIPIARITAHAAQPLPVCPLRRTPLLRALPMRAR
LPPAPASLRAFVFDPSKHACLIGHQTRGVFLASSIVSILSAQGNDCKGDKAKSLKISANEVDYKLPYNDMHDDHILLDCNDLNDSMPMVEKKCSELESCKTMHDITIDNK
KMHDVLPLAEEEIAKKVPCDSMHHIPSPLVTGIFCDYEVSMLDPPIHEDSQLECELESMREGKGELKESSYGKKKEKKRMVHTIVPHKPNLKRLLENDPYLQAIMFYPRA
CIVLRFLQELSILNLNHGRTKVELKAMESQDNMELNGLPLPSSHDL