CuGenDBv2

Gene ID	Moc09g25010
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
Genome location	chr9:18720594..18721342
RNA-Seq Expression	Moc09g25010
Synteny	Moc09g25010
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]

2.9e-51

93.64

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQL+FVEEKRLTALCRGQLYQ RMMKAYD+ VHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPF+VKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNPVN DH
Subjt:  EFLNPVNSDH

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]

1.1e-50

93.64

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQLNFVEEKRLTALCR QLYQRRMMKAYDKKVHPRRF+E DLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EF NPV +DH
Subjt:  EFLNPVNSDH

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]

7.6e-52

95.45

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQLNFVEEKRLTAL RGQLYQRRMMKAYDKKVH RRFREGDLVLKRILPLQKDHRGKWTPNYEGPFV+KKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNP+NSDH
Subjt:  EFLNPVNSDH

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]

8.9e-53

96.36

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKL  AE VQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYD+KVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNPVNSDH
Subjt:  EFLNPVNSDH

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]

1.2e-52

97.27

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLK ILPLQKDHRGKWT NYEGPFVVKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNPVNSDH
Subjt:  EFLNPVNSDH

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CNY7 Ribonuclease H

1.4e-51

93.64

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQL+FVEEKRLTALCRGQLYQ RMMKAYD+ VHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPF+VKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNPVN DH
Subjt:  EFLNPVNSDH

A0A6J1D099 Ribonuclease H

5.3e-51

93.64

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQLNFVEEKRLTALCR QLYQRRMMKAYDKKVHPRRF+E DLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EF NPV +DH
Subjt:  EFLNPVNSDH

A0A6J1D7C7 Ribonuclease H

3.7e-52

95.45

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQLNFVEEKRLTAL RGQLYQRRMMKAYDKKVH RRFREGDLVLKRILPLQKDHRGKWTPNYEGPFV+KKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNP+NSDH
Subjt:  EFLNPVNSDH

A0A6J1DZ90 Ribonuclease H

4.3e-53

96.36

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKL  AE VQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYD+KVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNPVNSDH
Subjt:  EFLNPVNSDH

A0A6J1E2J7 Ribonuclease H

5.7e-53

97.27

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Query:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT
        MEAKLQEAE VQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLK ILPLQKDHRGKWT NYEGPFVVKKAFSGGALVLANMDGT
Subjt:  MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGT

Query:  EFLNPVNSDH
        EFLNPVNSDH
Subjt:  EFLNPVNSDH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAGCTAAGTTACAAGAGGCTGAGTTGGTCCAAAGACGTTATGAGCAGCTAAACTTTGTAGAAGAAAAGAGGTTGACGGCATTATGCAGAGGACAACTTTATCAAAG
AAGAATGATGAAAGCCTATGACAAGAAGGTGCACCCAAGAAGGTTTAGAGAGGGAGATTTAGTTCTAAAAAGAATTCTCCCATTACAGAAAGATCATCGAGGCAAATGGA
CCCCGAATTATGAAGGACCATTTGTGGTGAAAAAGGCTTTCTCCGGAGGAGCACTAGTTCTGGCCAACATGGATGGCACTGAATTTTTAAATCCAGTCAACTCAGATCAT
GGCAAAGTCGTCGTCCCATTTGTTCTGGTTACTCTCGATCCAGTTAAAAGGATTTTTGAAGGAAGGCGAAATGCGGTGATCGAGCTATCTGAACAATCCTAA

mRNA sequence

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Protein sequence

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MEAKLQEAELVQRRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALVLANMDGTEFLNPVNSDH
GKVVVPFVLVTLDPVKRIFEGRRNAVIELSEQS

Moc09g25010 (gene) of Bitter gourd (OHB3-1) v2 genome