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Moc09g25170 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g25170
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr9:18848366..18852012
RNA-Seq ExpressionMoc09g25170
SyntenyMoc09g25170
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]4.7e-1042.02Show/hide
Query:  EGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGR
        E    + ++R+AQQ  + RMI  ME + +R+ + EI+N+A+ER+PPP +P ++ +H     N+ +  GSD L+DDQVTLL       RR GH + R RGR
Subjt:  EGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGR

Query:  GRQH-NYQKRAPREQAQVD
        GR + N Q+RA +E +Q +
Subjt:  GRQH-NYQKRAPREQAQVD

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]9.7e-0844Show/hide
Query:  MIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQH-NYQKRAPREQAQVD
        MI  ME + +R+ + EI+N+A+ER+PPP +P ++ +H     N+ +  GSD L+DDQVTLL       RR GH + R RGRGR + N Q+RA +E +Q +
Subjt:  MIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQH-NYQKRAPREQAQVD

XP_022152309.1 uncharacterized protein LOC111020057 [Momordica charantia]1.0e-2083.33Show/hide
Query:  MDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQHNYQKRAPREQAQVD
        MDD+LLYR NES+EG SDQLEDDQVTLLA H+RGDRR GHRLDR RGRG QHNYQ+RAPRE+AQVD
Subjt:  MDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQHNYQKRAPREQAQVD

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]2.3e-1751.61Show/hide
Query:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERI-PPPSPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRL
        M N   EGNISD R R+A +  +ERMIR+ME + ER+ +LE QNQA+ R+ PPP  RVMD+      +E +  GSD  EDDQ T+LA  + GD   G  L
Subjt:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERI-PPPSPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRL

Query:  DRVRGRGRQHNYQKRAPREQAQVD
        DR RGRGR ++  +RAPR  AQVD
Subjt:  DRVRGRGRQHNYQKRAPREQAQVD

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]3.7e-0740.68Show/hide
Query:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPPSPRVMDDHLLYRANESKEG-GSDQLEDDQVTLLAAHKRGDRRAGHRL
        M N ++  NI+D R+R+AQQR MER+IR +E++ +R+ +LEIQNQA++RIP P+P          + ++ EG  SD  ED+               GH L
Subjt:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPPSPRVMDDHLLYRANESKEG-GSDQLEDDQVTLLAAHKRGDRRAGHRL

Query:  DRVRGRGRQ-HNYQKRAP
         R R  GR+ HN Q+R P
Subjt:  DRVRGRGRQ-HNYQKRAP

TrEMBL top hitse value%identityAlignment
A0A5A7TK52 Retrotrans_gag domain-containing protein2.3e-1042.02Show/hide
Query:  EGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGR
        E    + ++R+AQQ  + RMI  ME + +R+ + EI+N+A+ER+PPP +P ++ +H     N+ +  GSD L+DDQVTLL       RR GH + R RGR
Subjt:  EGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGR

Query:  GRQH-NYQKRAPREQAQVD
        GR + N Q+RA +E +Q +
Subjt:  GRQH-NYQKRAPREQAQVD

A0A5D3CHG3 Retrotrans_gag domain-containing protein4.7e-0844Show/hide
Query:  MIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQH-NYQKRAPREQAQVD
        MI  ME + +R+ + EI+N+A+ER+PPP +P ++ +H     N+ +  GSD L+DDQVTLL       RR GH + R RGRGR + N Q+RA +E +Q +
Subjt:  MIRTMEDILERMHKLEIQNQAQERIPPP-SPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQH-NYQKRAPREQAQVD

A0A6J1DFN2 uncharacterized protein LOC1110200574.8e-2183.33Show/hide
Query:  MDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQHNYQKRAPREQAQVD
        MDD+LLYR NES+EG SDQLEDDQVTLLA H+RGDRR GHRLDR RGRG QHNYQ+RAPRE+AQVD
Subjt:  MDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGRGRQHNYQKRAPREQAQVD

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241151.1e-1751.61Show/hide
Query:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERI-PPPSPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRL
        M N   EGNISD R R+A +  +ERMIR+ME + ER+ +LE QNQA+ R+ PPP  RVMD+      +E +  GSD  EDDQ T+LA  + GD   G  L
Subjt:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERI-PPPSPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRL

Query:  DRVRGRGRQHNYQKRAPREQAQVD
        DR RGRGR ++  +RAPR  AQVD
Subjt:  DRVRGRGRQHNYQKRAPREQAQVD

A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699483.4e-0642.27Show/hide
Query:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPPSPRVMDDHLLYRANESKEG-GSDQLEDD-QVTLLAAHKRGDRRA
        M N +N  +I+D R+R+AQQR MER+IR +E++ +R+ +LEIQNQA++RIP P+P          + ++ EG  SD  ED+ QV  L + +R +  A
Subjt:  MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPPSPRVMDDHLLYRANESKEG-GSDQLEDD-QVTLLAAHKRGDRRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATGAAGAAAATGAAGGTAACATATCGGATGGTAGGATGAGACAGGCCCAACAAAGAGCTATGGAGCGAATGATTCGTACCATGGAAGACATATTGGAA
CGAATGCACAAGTTGGAGATTCAAAACCAAGCGCAGGAGAGGATACCACCACCATCACCACGTGTGATGGATGACCATCTTTTATATCGAGCGAATGAATCTAAG
GAAGGTGGGTCTGATCAACTAGAGGATGACCAAGTTACCTTGTTAGCTGCACATAAAAGGGGAGATAGACGTGCTGGACATCGCTTGGATAGAGTGAGAGGTCGT
GGAAGACAACACAATTATCAGAAGAGAGCTCCAAGAGAACAGGCTCAAGTTGATCATACCGCCCCCCCTCCTTTTACAGTACTTGATGTTCGACCTTGCCATTTA
TTCCCAAGGCCTAGAACCACTACCTCGCAAACACCACTCTACTTTAGTCCTTCAAGCCTAACTCCTCGAGTCGCATTGACCCTTAACATTTATCCCCAAGGCCTC
AATACTCCTCTACAGAAACTTGATGTTCGGCCTTGCCATTTATTCCCAAGGCCTGAACTGTGCACCGGTCCTTGCCGTTTATCCTCAAGGTATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAATGAAGAAAATGAAGGTAACATATCGGATGGTAGGATGAGACAGGCCCAACAAAGAGCTATGGAGCGAATGATTCGTACCATGGAAGACATATTGGAA
CGAATGCACAAGTTGGAGATTCAAAACCAAGCGCAGGAGAGGATACCACCACCATCACCACGTGTGATGGATGACCATCTTTTATATCGAGCGAATGAATCTAAG
GAAGGTGGGTCTGATCAACTAGAGGATGACCAAGTTACCTTGTTAGCTGCACATAAAAGGGGAGATAGACGTGCTGGACATCGCTTGGATAGAGTGAGAGGTCGT
GGAAGACAACACAATTATCAGAAGAGAGCTCCAAGAGAACAGGCTCAAGTTGATCATACCGCCCCCCCTCCTTTTACAGTACTTGATGTTCGACCTTGCCATTTA
TTCCCAAGGCCTAGAACCACTACCTCGCAAACACCACTCTACTTTAGTCCTTCAAGCCTAACTCCTCGAGTCGCATTGACCCTTAACATTTATCCCCAAGGCCTC
AATACTCCTCTACAGAAACTTGATGTTCGGCCTTGCCATTTATTCCCAAGGCCTGAACTGTGCACCGGTCCTTGCCGTTTATCCTCAAGGTATCGATGA
Protein sequenceShow/hide protein sequence
MTNEENEGNISDGRMRQAQQRAMERMIRTMEDILERMHKLEIQNQAQERIPPPSPRVMDDHLLYRANESKEGGSDQLEDDQVTLLAAHKRGDRRAGHRLDRVRGR
GRQHNYQKRAPREQAQVDHTAPPPFTVLDVRPCHLFPRPRTTTSQTPLYFSPSSLTPRVALTLNIYPQGLNTPLQKLDVRPCHLFPRPELCTGPCRLSSRYR