; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g25330 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g25330
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:18944536..18952286
RNA-Seq ExpressionMoc09g25330
SyntenyMoc09g25330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046201.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-3944.44Show/hide
Query:  VYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGK
        + ++ AS+    DNY TWK NLN +LVV+DL   LTE CP+AP   A + V  AYDRW KAN KARVYI+AN+SDVLAK HE++ TA E+MDSL  MFG+
Subjt:  VYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGK

Query:  PSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEF---EEFQE---------------------EGGQGNKTVPAATQKGK---------KAKAADKGKC
        PS  + HEA+K+I+  Q+KE   + ++       F   E FQ                       G      V  +  K K         K K   KGKC
Subjt:  PSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEF---EEFQE---------------------EGGQGNKTVPAATQKGK---------KAKAADKGKC

Query:  FHCGVDGHWKRNYMKYLAEKKKAKE
        +HC  DGHW RN  KYLAEKK  KE
Subjt:  FHCGVDGHWKRNYMKYLAEKKKAKE

KAA0051146.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-4046.94Show/hide
Query:  MVYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFG
        ++ ++ AS     DNY TWK+NLN +LV++DL   LT+ CP+ P  NA      AYDRW KAN KARVYILA++SDVLAK HE+  TA E+MD+LR  F 
Subjt:  MVYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFG

Query:  KPSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEFEEFQEEGG---QGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKE
        +P   + HEA+K+I+  +MKE   + ++       F   +  GG   + N+      ++ K  KAA KGKC+ CG +GHW RNY KYLAEKK  KE
Subjt:  KPSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEFEEFQEEGG---QGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKE

KAA0058181.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-4049.72Show/hide
Query:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF
        +NY +WK  +N VL++DDL   L E CP+ P  NA + V  AY+R  KAN KAR YILA++S VLAK HE+M+TA E+MDSL++MFG+ S Q+ H+ALK+
Subjt:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF

Query:  IFNSQMKERFDLWDYAWTFFYEFEEFQEEGGQGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKEG
        I+N++M E   + ++       F   +  G   ++ +       KKAKAA KG CFHC  +GHWKRN  KYLAEKKKAK+G
Subjt:  IFNSQMKERFDLWDYAWTFFYEFEEFQEEGGQGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKEG

KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3740.43Show/hide
Query:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF
        +NY +WK  +N VL++DDL   L E CP+ P  NAT+ V   Y+RW K N K R YILA++S+VLAK HE+M+TA E+MDSL++MFG+ S Q+ H+ALK+
Subjt:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF

Query:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK
        I+N++M E   + ++       F   +                                                ++GGQGNK   AA +  KK+KA  K
Subjt:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK

Query:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN
        G CFH   +GHWKRN  KYLAEKKKAK+G+
Subjt:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3740.43Show/hide
Query:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF
        +NY +WK  +N VL++DDL   L E CP+ P  NAT+ V   Y+RW K N K R YILA++S+VLAK HE+M+TA E+MDSL++MFG+ S Q+ H+ALK+
Subjt:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF

Query:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK
        I+N++M E   + ++       F   +                                                ++GGQGNK   AA +  KK+KA  K
Subjt:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK

Query:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN
        G CFH   +GHWKRN  KYLAEKKKAK+G+
Subjt:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN

TrEMBL top hitse value%identityAlignment
A0A5A7TXW7 Gag/pol protein5.9e-4044.44Show/hide
Query:  VYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGK
        + ++ AS+    DNY TWK NLN +LVV+DL   LTE CP+AP   A + V  AYDRW KAN KARVYI+AN+SDVLAK HE++ TA E+MDSL  MFG+
Subjt:  VYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGK

Query:  PSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEF---EEFQE---------------------EGGQGNKTVPAATQKGK---------KAKAADKGKC
        PS  + HEA+K+I+  Q+KE   + ++       F   E FQ                       G      V  +  K K         K K   KGKC
Subjt:  PSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEF---EEFQE---------------------EGGQGNKTVPAATQKGK---------KAKAADKGKC

Query:  FHCGVDGHWKRNYMKYLAEKKKAKE
        +HC  DGHW RN  KYLAEKK  KE
Subjt:  FHCGVDGHWKRNYMKYLAEKKKAKE

A0A5A7UXG8 Gag/pol protein4.5e-4049.72Show/hide
Query:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF
        +NY +WK  +N VL++DDL   L E CP+ P  NA + V  AY+R  KAN KAR YILA++S VLAK HE+M+TA E+MDSL++MFG+ S Q+ H+ALK+
Subjt:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF

Query:  IFNSQMKERFDLWDYAWTFFYEFEEFQEEGGQGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKEG
        I+N++M E   + ++       F   +  G   ++ +       KKAKAA KG CFHC  +GHWKRN  KYLAEKKKAK+G
Subjt:  IFNSQMKERFDLWDYAWTFFYEFEEFQEEGGQGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKEG

A0A5A7UYX7 Gag/pol protein5.5e-3840.43Show/hide
Query:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF
        +NY +WK  +N VL++DDL   L E CP+ P  NAT+ V   Y+RW K N K R YILA++S+VLAK HE+M+TA E+MDSL++MFG+ S Q+ H+ALK+
Subjt:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF

Query:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK
        I+N++M E   + ++       F   +                                                ++GGQGNK   AA +  KK+KA  K
Subjt:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK

Query:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN
        G CFH   +GHWKRN  KYLAEKKKAK+G+
Subjt:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN

A0A5D3BHG7 Gag/pol protein5.5e-3840.43Show/hide
Query:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF
        +NY +WK  +N VL++DDL   L E CP+ P  NAT+ V   Y+RW K N K R YILA++S+VLAK HE+M+TA E+MDSL++MFG+ S Q+ H+ALK+
Subjt:  DNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFGKPSSQVMHEALKF

Query:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK
        I+N++M E   + ++       F   +                                                ++GGQGNK   AA +  KK+KA  K
Subjt:  IFNSQMKERFDLWDYAWTFFYEFEEFQ------------------------------------------------EEGGQGNKTVPAATQKGKKAKAADK

Query:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN
        G CFH   +GHWKRN  KYLAEKKKAK+G+
Subjt:  GKCFHCGVDGHWKRNYMKYLAEKKKAKEGN

A0A5D3BVL0 Gag/pol protein2.0e-4046.94Show/hide
Query:  MVYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFG
        ++ ++ AS     DNY TWK+NLN +LV++DL   LT+ CP+ P  NA      AYDRW KAN KARVYILA++SDVLAK HE+  TA E+MD+LR  F 
Subjt:  MVYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDSLRDMFG

Query:  KPSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEFEEFQEEGG---QGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKE
        +P   + HEA+K+I+  +MKE   + ++       F   +  GG   + N+      ++ K  KAA KGKC+ CG +GHW RNY KYLAEKK  KE
Subjt:  KPSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEFEEFQEEGG---QGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATGAAAGGAGAAGAACGGAGCAATGGTGACTCCGAGTATAATACAGAGCCGCTGGAACACTCAGATTCGGCCAATATTGAAATTCACTTCGAAATTGCACCAGA
CACAATGTTGGAGAGCACTCCACTGGCCACAATTCAAGAACAGGAAAAGATGAATTTGAAAATGGCTGAAATTCTAGTGGCGGTTCATGACGCGACGGGAGAAAACCCAC
TAGATCATAATGGGAATATCATGGATGTTCAGGAGAGAATAACTTCCATTAAAGAGGATGAGATACTTACAGATTTGCCCCAAGCAGATCCAGAGCTTCCACTCATGGGG
GCCAACTGGAAAGCGATCGCATTCTTCAGTCTCAAGATTTTTTATTCCATTGGGTGTGAGGAGTACAAACGGCTCGGCTCGATATTTGCAAACAAAAGGAGCACTTTGAG
TACTTCGGTAATTTCTCCAGTGCACGAAGGAGGAGAAAATGAGCAAGACATCAACCAAGAGGAACACTTTGAGTATGAAATAGAAGGTAGAACTCCAAAACCGTCTTCTC
CACCCCAAGAAGAACATGTCATTTATGGTAACTTAGAAGATAAATTTGCAGCTTCAACCGCTTCATATTCTCCGTCTGATCTTCACTATGAGGCTAGAACCGTCATTGAG
AATATTGAACCAAAGATTGATTCCAAAGTACAAAATGAAAGCCAACATATGGTTTACAAGGTTGAAGCATCTCGTGGGAAGCAAAGGGATAACTATCCCACGTGGAAAAC
AAACCTTAACCCCGTACTCGTAGTAGATGATCTCTACCTTACTTTAACGGAGGTCTGTCCGAAGGCCCCTGGACCTAACGCCACGAAAATTGTTCATGGCGCATATGATA
GGTGGACAAAGGCCAATTCAAAGGCCCGAGTCTACATCTTGGCAAACATATCTGATGTTTTAGCCAAGAATCATGAGACCATGATCACTGCACTCGAGATGATGGATTCA
TTGCGTGATATGTTTGGAAAACCTTCCTCACAAGTCATGCATGAAGCTCTCAAATTCATCTTTAACTCACAGATGAAGGAGAGGTTCGACCTTTGGGACTACGCTTGGAC
CTTCTTCTACGAGTTCGAAGAATTTCAAGAAGAAGGGGGACAAGGGAATAAAACTGTCCCAGCTGCTACCCAGAAGGGGAAGAAGGCTAAGGCTGCAGACAAAGGAAAAT
GTTTCCACTGTGGTGTTGATGGGCACTGGAAGAGGAACTATATGAAGTACTTAGCCGAGAAGAAGAAAGCAAAAGAAGGAAATTATTTCCTGGAAGTAGCTGGAGGCCGG
AGAGATGTCTCTCAGAGTTGGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATGAAAGGAGAAGAACGGAGCAATGGTGACTCCGAGTATAATACAGAGCCGCTGGAACACTCAGATTCGGCCAATATTGAAATTCACTTCGAAATTGCACCAGA
CACAATGTTGGAGAGCACTCCACTGGCCACAATTCAAGAACAGGAAAAGATGAATTTGAAAATGGCTGAAATTCTAGTGGCGGTTCATGACGCGACGGGAGAAAACCCAC
TAGATCATAATGGGAATATCATGGATGTTCAGGAGAGAATAACTTCCATTAAAGAGGATGAGATACTTACAGATTTGCCCCAAGCAGATCCAGAGCTTCCACTCATGGGG
GCCAACTGGAAAGCGATCGCATTCTTCAGTCTCAAGATTTTTTATTCCATTGGGTGTGAGGAGTACAAACGGCTCGGCTCGATATTTGCAAACAAAAGGAGCACTTTGAG
TACTTCGGTAATTTCTCCAGTGCACGAAGGAGGAGAAAATGAGCAAGACATCAACCAAGAGGAACACTTTGAGTATGAAATAGAAGGTAGAACTCCAAAACCGTCTTCTC
CACCCCAAGAAGAACATGTCATTTATGGTAACTTAGAAGATAAATTTGCAGCTTCAACCGCTTCATATTCTCCGTCTGATCTTCACTATGAGGCTAGAACCGTCATTGAG
AATATTGAACCAAAGATTGATTCCAAAGTACAAAATGAAAGCCAACATATGGTTTACAAGGTTGAAGCATCTCGTGGGAAGCAAAGGGATAACTATCCCACGTGGAAAAC
AAACCTTAACCCCGTACTCGTAGTAGATGATCTCTACCTTACTTTAACGGAGGTCTGTCCGAAGGCCCCTGGACCTAACGCCACGAAAATTGTTCATGGCGCATATGATA
GGTGGACAAAGGCCAATTCAAAGGCCCGAGTCTACATCTTGGCAAACATATCTGATGTTTTAGCCAAGAATCATGAGACCATGATCACTGCACTCGAGATGATGGATTCA
TTGCGTGATATGTTTGGAAAACCTTCCTCACAAGTCATGCATGAAGCTCTCAAATTCATCTTTAACTCACAGATGAAGGAGAGGTTCGACCTTTGGGACTACGCTTGGAC
CTTCTTCTACGAGTTCGAAGAATTTCAAGAAGAAGGGGGACAAGGGAATAAAACTGTCCCAGCTGCTACCCAGAAGGGGAAGAAGGCTAAGGCTGCAGACAAAGGAAAAT
GTTTCCACTGTGGTGTTGATGGGCACTGGAAGAGGAACTATATGAAGTACTTAGCCGAGAAGAAGAAAGCAAAAGAAGGAAATTATTTCCTGGAAGTAGCTGGAGGCCGG
AGAGATGTCTCTCAGAGTTGGAACTAA
Protein sequenceShow/hide protein sequence
MGMKGEERSNGDSEYNTEPLEHSDSANIEIHFEIAPDTMLESTPLATIQEQEKMNLKMAEILVAVHDATGENPLDHNGNIMDVQERITSIKEDEILTDLPQADPELPLMG
ANWKAIAFFSLKIFYSIGCEEYKRLGSIFANKRSTLSTSVISPVHEGGENEQDINQEEHFEYEIEGRTPKPSSPPQEEHVIYGNLEDKFAASTASYSPSDLHYEARTVIE
NIEPKIDSKVQNESQHMVYKVEASRGKQRDNYPTWKTNLNPVLVVDDLYLTLTEVCPKAPGPNATKIVHGAYDRWTKANSKARVYILANISDVLAKNHETMITALEMMDS
LRDMFGKPSSQVMHEALKFIFNSQMKERFDLWDYAWTFFYEFEEFQEEGGQGNKTVPAATQKGKKAKAADKGKCFHCGVDGHWKRNYMKYLAEKKKAKEGNYFLEVAGGR
RDVSQSWN