CuGenDBv2

Gene ID	Moc09g25560
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:19124454..19125987
RNA-Seq Expression	Moc09g25560
Synteny	Moc09g25560
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN60145.1 hypothetical protein VITISV_019412 [Vitis vinifera]

9.2e-41

46.83

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   +  E T  DL KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ V+I F DE+ A+ +L S P SWETM+  VSNS G + LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK
         L  +
Subjt:  ALAVK

RVW41523.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.9e-42

38.13

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   V  E T  DL KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ V+I F DE+ A+ +L S P SWE M+  VSNS G + LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK---KVVDDALVCVESNTE---------------------------------------IGNQSSEWSE--FGGNQWKLTKGFKLVAVGHRRSTIY
         L  +   +V D  L+ V+S  +                                       +G    E     F G  WK+TKG +++A G +  T+Y
Subjt:  ALAVK---KVVDDALVCVESNTE---------------------------------------IGNQSSEWSE--FGGNQWKLTKGFKLVAVGHRRSTIY

RVW48802.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

5.4e-41

47.32

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   V  E T  +L KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ V+I F DE+ A+ +L S P SWE M+ TVSNS G K LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK
         L  +
Subjt:  ALAVK

RVW60263.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.2e-41

45.91

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   V  E T  DL KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ V+I F DE+ A+ +L S P SWE M+  VSNS G + LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK---KVVDDALVCVES
         L  +   +V D  L+ V+S
Subjt:  ALAVK---KVVDDALVCVES

TKS05865.1 hypothetical protein D5086_0000129140 [Populus alba]

5.4e-41

48.47

Show/hide

Query:  GIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YWKMQI++YL  KKL+   L  +P  M++EDW+  + Q +  IRL LS  V   VT E +   L +AL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGLALAV
        ++M ENTS+   +N    + NQL+ ++I F DE++A+ LL+S P SWE M+T VSNS G   LK+ +I D  +AEE+RRK SG+  +S  GLAL +
Subjt:  IQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGLALAV

TrEMBL top hits

e value

%identity

Alignment

A0A438E1E8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-42

38.13

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   V  E T  DL KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ V+I F DE+ A+ +L S P SWE M+  VSNS G + LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK---KVVDDALVCVESNTE---------------------------------------IGNQSSEWSE--FGGNQWKLTKGFKLVAVGHRRSTIY
         L  +   +V D  L+ V+S  +                                       +G    E     F G  WK+TKG +++A G +  T+Y
Subjt:  ALAVK---KVVDDALVCVESNTE---------------------------------------IGNQSSEWSE--FGGNQWKLTKGFKLVAVGHRRSTIY

A0A438EM85 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-41

47.32

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   V  E T  +L KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ V+I F DE+ A+ +L S P SWE M+ TVSNS G K LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK
         L  +
Subjt:  ALAVK

A0A438FJS0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-41

45.91

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   V  E T  DL KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ V+I F DE+ A+ +L S P SWE M+  VSNS G + LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK---KVVDDALVCVES
         L  +   +V D  L+ V+S
Subjt:  ALAVK---KVVDDALVCVES

A0A4U5QBU6 Uncharacterized protein

2.6e-41

48.47

Show/hide

Query:  GIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YWKMQI++YL  KKL+   L  +P  M++EDW+  + Q +  IRL LS  V   VT E +   L +AL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGLALAV
        ++M ENTS+   +N    + NQL+ ++I F DE++A+ LL+S P SWE M+T VSNS G   LK+ +I D  +AEE+RRK SG+  +S  GLAL +
Subjt:  IQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGLALAV

A0A7N2KY95 Uncharacterized protein

1.5e-41

47.32

Show/hide

Query:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV
        AE++G   GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + Q +  IRL LS +V   V  E T  DL KAL   YEKPSANNKV
Subjt:  AEKSG-FKGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKV

Query:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL
        +L+++ FN++M EN S+   +NE   + NQL+ VKI F DE+ A+ +L S P SWE M+  VSNS G + LK+++I D  +AEEIRR+ +G+ S S   L
Subjt:  YLVRRFFNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGL

Query:  ALAVK
         L ++
Subjt:  ALAVK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.9e-06

22.58

Show/hide

Query:  KGIMKFDGANFEYWKMQIKDYLTCKKLNKALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRFFN
        + I  FDG  +  WK +I+  L  + + K +        D+ W +    A + I   LS + ++  T+++TA  + + L+  YE+ S  +++ L +R  +
Subjt:  KGIMKFDGANFEYWKMQIKDYLTCKKLNKALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSINSRINEVTKLINQL--ALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGLALAVKK
        +++    S+ S  +   +LI++L  A  KI   D+++   LL + P  ++ + T +  +L +++L  + + +  + +EI+ K    +++          K
Subjt:  IQMEENTSINSRINEVTKLINQL--ALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGLALAVKK

Query:  VVDDALVCVESNTEIGN
         V +A+V   +NT   N
Subjt:  VVDDALVCVESNTEIGN

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.6e-19

33.52

Show/hide

Query:  IMKFDGAN-FEYWKMQIKDYLTCKKLNKAL---KERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRF
        + KF+G N F  W+ +++D L  + L+K L    ++P  MK EDW + +E+A + IRL LS +VV+ + +E TA  +   LE+ Y   +  NK+YL ++ 
Subjt:  IMKFDGAN-FEYWKMQIKDYLTCKKLNKAL---KERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRF

Query:  FNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRK
        + + M E T+  S +N    LI QLA + +   +E  AI LL S P S++ + TT+ +  G  +++  ++  A +  E  RK
Subjt:  FNIQMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGATCAGCAGAGAAGTCAGGTTTTAAAGGAATCATGAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAA
TAAAGCTTTAAAGGAACGACCAGCAGAGATGAAAGATGAAGATTGGGTGGAGACGAATGAGCAAGCAGTTGCCTTTATCAGATTGTGTTTGTCGATGAATGTGGTAAGTC
TTGTAACAAACGAAATGACAGCAATAGATCTGACGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGATTCTTTAACATT
CAAATGGAAGAGAATACTTCTATCAATTCCCGCATAAATGAGGTCACAAAATTAATTAATCAATTGGCATTAGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCA
GTTGCTAACATCTTTTCCTGAAAGTTGGGAAACGATGAAGACAACAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTG
AAGAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCTGTACACGGCTTAGCATTGGCTGTCAAAAAAGTTGTAGACGATGCCCTCGTCTGTGTTGAAAGCAACACA
GAAATAGGAAACCAGTCATCGGAGTGGAGCGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATTCAAGTTGGTGGCAGTTGGCCATAGAAGATCTACAATTTACAC
GTCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGCGGATGCAAGTTGCAGATGGTGTCCAAAGAGGTAGGATTGAACCAGCAACAAAGACAACTAGAACAGATCAAG
AGGATCTGCCATCAATTCAGGAAGAACAATTGAGAAGTCAAAGAATGAGAACATGTTCTTTAGGTTGTCAGGGATTATCCCCAATTGTCAGACGAATGAGTGAATTGATG
AAGTCGCGCCAGCGAACAGTTGCATCAGAGAAGATGAACTTAGTAGGTGCTGAGGTAAAGAATGAAGTTTCGATTCTGGCAGCAGGCTTGAATATAGTTGTCAAGTCATC
GGTGGGAAGTTCTTTCTTCAAGAATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGSAEKSGFKGIMKFDGANFEYWKMQIKDYLTCKKLNKALKERPAEMKDEDWVETNEQAVAFIRLCLSMNVVSLVTNEMTAIDLTKALENRYEKPSANNKVYLVRRFFNI
QMEENTSINSRINEVTKLINQLALVKITFSDEVNAIQLLTSFPESWETMKTTVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVHGLALAVKKVVDDALVCVESNT
EIGNQSSEWSEFGGNQWKLTKGFKLVAVGHRRSTIYTSQLSVARGSLKQRMQVADGVQRGRIEPATKTTRTDQEDLPSIQEEQLRSQRMRTCSLGCQGLSPIVRRMSELM
KSRQRTVASEKMNLVGAEVKNEVSILAAGLNIVVKSSVGSSFFKN

Moc09g25560 (gene) of Bitter gourd (OHB3-1) v2 genome