CuGenDBv2

Gene ID	Moc09g25610
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr9:19152231..19153142
RNA-Seq Expression	Moc09g25610
Synteny	Moc09g25610
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031826.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-60

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-60

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-60

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-60

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-60

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

7.6e-61

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

A0A5A7TWB9 Gag/pol protein

7.6e-61

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

A0A5A7TZD7 Gag/pol protein

7.6e-61

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

A0A5A7UGV2 Gag/pol protein

7.6e-61

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

A0A5A7V4M1 Gag/pol protein

7.6e-61

55.31

Show/hide

Query:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL
        +VLAKK E M+T +EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG++VREHVLN+MVHFNVA+ NGAVIDE SQVSFI ES P+SFL FRSNAVMNK+
Subjt:  DVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESHPKSFLPFRSNAVMNKL

Query:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR
         YTLTTLLNELQT++ LMK                    S+ GTKS PSSS +K +KKKK  G+G+K +  AA T KK K   A KG CFHCN +GH KR
Subjt:  EYTLTTLLNELQTYQFLMK-------------------SSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAA-TGKKGKAKVAEKGKCFHCNMDGHSKR

Query:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS
        NCPKYLA+KKKA                                    + ISSWRQL+  EMT++V TG VVS
Subjt:  NCPKYLAKKKKAN-----------------------------------ERISSWRQLDAREMTLKVRTGEVVS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGGCGGTGCGCAACGTCTATGACAGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATCTTGGCGAGCATGTGATGTGCTTGCTAAGAAGCAAGAGGACATGGT
CACCACTAAGGAGATCATGGACTCGCTGCAAAGCATGTTTGGACAACCGTCCTCACAACCTCGACATGAAGCCCTTAAGTTTATTTACAACTCCCGCATGAAGGAGGGCT
CCACAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCAAAGTCGAATGGGGCTGTCATAGACGAGCAGAGTCAGGTCAGCTTCATTTCGGAATCTCAT
CCGAAGAGTTTTCTGCCATTTCGCAGCAATGCAGTTATGAATAAGTTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTTTCTTATGAAAAGTTC
GTCCCCTGGAACCAAGTCTGCGCCCTCTTCTTCTGCAAGTAAGACTTTCAAGAAGAAGAAGGTTGCTGGTAAGGGGTCTAAACCTGACTCCGTTGCTGCTACTGGCAAGA
AAGGCAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGGGCATTCGAAGCGCAACTGCCCAAAATACTTGGCCAAAAAGAAGAAAGCCAACGAA
AGAATTAGTTCCTGGAGGCAGCTTGATGCCAGAGAGATGACTCTCAAGGTTAGAACAGGAGAGGTCGTCTCAAACCAGACTGCTCTGGAATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MWRCATSMTDGSRPMIRPRSTSWRACDVLAKKQEDMVTTKEIMDSLQSMFGQPSSQPRHEALKFIYNSRMKEGSTVREHVLNLMVHFNVAKSNGAVIDEQSQVSFISESH
PKSFLPFRSNAVMNKLEYTLTTLLNELQTYQFLMKSSSPGTKSAPSSSASKTFKKKKVAGKGSKPDSVAATGKKGKAKVAEKGKCFHCNMDGHSKRNCPKYLAKKKKANE
RISSWRQLDAREMTLKVRTGEVVSNQTALE

Moc09g25610 (gene) of Bitter gourd (OHB3-1) v2 genome