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Moc09g25960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g25960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:19437122..19443930
RNA-Seq ExpressionMoc09g25960
SyntenyMoc09g25960
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156049.1 uncharacterized protein LOC111023017 [Momordica charantia]1.7e-3359.17Show/hide
Query:  PIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIIRPGTYVLA
        P+EIGMP+ RVE+++  TN+E  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R RTF+ G L L++V  HV AL+P WEGP+ V  ++RP  Y+L+
Subjt:  PIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIIRPGTYVLA

Query:  DLKGDVLAHPWNAEHLKRYY
        DL G  L HPWNAE L+ YY
Subjt:  DLKGDVLAHPWNAEHLKRYY

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]1.7e-3859.26Show/hide
Query:  RSLARQPTADTSFCLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHV
        +++ R+ T +T F +   +       +EIGMP++RVE+YE   N EELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV
Subjt:  RSLARQPTADTSFCLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHV

Query:  GALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHP
          L+P+WEGPFEVKGI+RPGTY+LADL+G +L+HP
Subjt:  GALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHP

XP_022156271.1 uncharacterized protein LOC111023203 [Momordica charantia]4.1e-3251.7Show/hide
Query:  RSLARQPTADTSF--CLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT
        R++ R  T +T +   LG E +     P+EIGM + RVE++   TN+E LL+NLDLL E+R+ +QLRLAEY  RMA +YNARV+ R F+ G LVL++V  
Subjt:  RSLARQPTADTSF--CLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT

Query:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY
        HV AL P WEGP+ V  I+RP  Y+   L G  L HPWNAEHL+ YY
Subjt:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]3.3e-3755.1Show/hide
Query:  RSLARQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT
        R+  R+ T +T + L  G E +     P E+GMP+ RVE+++   N+E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ RTF+   LVL++V  
Subjt:  RSLARQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT

Query:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY
        HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]1.7e-4665.97Show/hide
Query:  RQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGA
        R+ T++T F L  G E +     P EIGMP+DR+E YEP  N  ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG 
Subjt:  RQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGA

Query:  LDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYYP
        LDP+WE  FEVKGI+RPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  LDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYYP

TrEMBL top hitse value%identityAlignment
A0A6J1DP99 uncharacterized protein K02A2.6-like8.4e-3959.26Show/hide
Query:  RSLARQPTADTSFCLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHV
        +++ R+ T +T F +   +       +EIGMP++RVE+YE   N EELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV
Subjt:  RSLARQPTADTSFCLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHV

Query:  GALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHP
          L+P+WEGPFEVKGI+RPGTY+LADL+G +L+HP
Subjt:  GALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHP

A0A6J1DS38 uncharacterized protein LOC1110230178.1e-3459.17Show/hide
Query:  PIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIIRPGTYVLA
        P+EIGMP+ RVE+++  TN+E  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R RTF+ G L L++V  HV AL+P WEGP+ V  ++RP  Y+L+
Subjt:  PIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIIRPGTYVLA

Query:  DLKGDVLAHPWNAEHLKRYY
        DL G  L HPWNAE L+ YY
Subjt:  DLKGDVLAHPWNAEHLKRYY

A0A6J1DUF4 uncharacterized protein LOC1110232032.0e-3251.7Show/hide
Query:  RSLARQPTADTSF--CLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT
        R++ R  T +T +   LG E +     P+EIGM + RVE++   TN+E LL+NLDLL E+R+ +QLRLAEY  RMA +YNARV+ R F+ G LVL++V  
Subjt:  RSLARQPTADTSF--CLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT

Query:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY
        HV AL P WEGP+ V  I+RP  Y+   L G  L HPWNAEHL+ YY
Subjt:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY

A0A6J1DWM2 Ribonuclease H1.6e-3755.1Show/hide
Query:  RSLARQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT
        R+  R+ T +T + L  G E +     P E+GMP+ RVE+++   N+E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ RTF+   LVL++V  
Subjt:  RSLARQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQT

Query:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY
        HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  HVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYY

A0A6J1DXL9 uncharacterized protein LOC1110254488.3e-4765.97Show/hide
Query:  RQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGA
        R+ T++T F L  G E +     P EIGMP+DR+E YEP  N  ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG 
Subjt:  RQPTADTSFCL--GKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGA

Query:  LDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYYP
        LDP+WE  FEVKGI+RPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  LDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGCGACGGCAACACGTCTCAGATCCGGCTTAGCAGTGGCGGCAGCATGTTCCCGACCAGTATGAAGCGACGGTGGCAGGGGTTTGTGACGCCAGCCCAT
ACAGTGGCGTTCGCCGATGGCCCAAGCAGAGATCCAACTTGTTGGCGACGTTCTTTGGCTAGACAACCTACGGCCGACACGTCATTCTGTTTGGGGAAAGAATAC
CTGGACACGTGGAGGACCCCTATTGAGATCGGCATGCCATCTGACAGAGTCGAGCATTACGAGCCTACGACAAACGCGGAAGAGCTGCTCCTCAACCTCGACTTG
TTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGGTCGGA
CATCTGGTCTTAAGGAGGGTCCAAACCCATGTGGGTGCCCTTGATCCGACCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAATCCGACCTGGGACGTACGTATTG
GCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTACTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGAGCGACGGCAACACGTCTCAGATCCGGCTTAGCAGTGGCGGCAGCATGTTCCCGACCAGTATGAAGCGACGGTGGCAGGGGTTTGTGACGCCAGCCCAT
ACAGTGGCGTTCGCCGATGGCCCAAGCAGAGATCCAACTTGTTGGCGACGTTCTTTGGCTAGACAACCTACGGCCGACACGTCATTCTGTTTGGGGAAAGAATAC
CTGGACACGTGGAGGACCCCTATTGAGATCGGCATGCCATCTGACAGAGTCGAGCATTACGAGCCTACGACAAACGCGGAAGAGCTGCTCCTCAACCTCGACTTG
TTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGGTCGGA
CATCTGGTCTTAAGGAGGGTCCAAACCCATGTGGGTGCCCTTGATCCGACCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAATCCGACCTGGGACGTACGTATTG
GCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTACTATCCTTGA
Protein sequenceShow/hide protein sequence
MTSDGNTSQIRLSSGGSMFPTSMKRRWQGFVTPAHTVAFADGPSRDPTCWRRSLARQPTADTSFCLGKEYLDTWRTPIEIGMPSDRVEHYEPTTNAEELLLNLDL
LEERRAMAQLRLAEYQGRMARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIIRPGTYVLADLKGDVLAHPWNAEHLKRYYP