CuGenDBv2

Gene ID	Moc09g26330
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:19672926..19673267
RNA-Seq Expression	Moc09g26330
Synteny	Moc09g26330
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AOZ57168.1 integrase, partial [Coccinia grandis]

1.9e-50

90.27

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKN+ISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVD+FSRFTWVLM+KHK++ALK+F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
         SF KRVQ +K F
Subjt:  SSFAKRVQMKKNF

XP_042953597.1 uncharacterized protein LOC122290115, partial [Carya illinoinensis]

1.2e-36

67.26

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M LIS +SKN LVRGLPK  F KDK+CDACQ GKQTK+SFK+K  ISTTRPLQL+HMDLFGP+R+AS GG YYAFVIVD+FSR+TWV+ L HK++A  +F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
        +   KR+Q +K +
Subjt:  SSFAKRVQMKKNF

XP_042983258.1 uncharacterized protein LOC122312662, partial [Carya illinoinensis]

1.2e-36

67.26

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M LIS +SKN LVRGLPK  F KDK+CDACQ GKQTK+SFK+K  ISTTRPLQL+HMDLFGP+R+AS GG YYAFVIVD+FSR+TWV+ L HK++A  +F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
        +   KR+Q +K +
Subjt:  SSFAKRVQMKKNF

XP_042983398.1 uncharacterized protein LOC122312814, partial [Carya illinoinensis]

1.2e-36

67.26

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M LIS +SKN LVRGLPK  F KDK+CDACQ GKQTK+SFK+K  ISTTRPLQL+HMDLFGP+R+AS GG YYAFVIVD+FSR+TWV+ L HK++A  +F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
        +   KR+Q +K +
Subjt:  SSFAKRVQMKKNF

XP_042988736.1 uncharacterized protein LOC122316271, partial [Carya illinoinensis]

1.2e-36

67.26

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M LIS +SKN LVRGLPK  F KDK+CDACQ GKQTK+SFK+K  ISTTRPLQL+HMDLFGP+R+AS GG YYAFVIVD+FSR+TWV+ L HK++A  +F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
        +   KR+Q +K +
Subjt:  SSFAKRVQMKKNF

TrEMBL top hits

e value

%identity

Alignment

A0A151QKV6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)

1.4e-35

67.86

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M  ++ +S+  LV GLPK KF KDK+CDACQ GKQ K+SFKSKN ISTTRPLQL+HMDLFGPSR  S GGNYY  VIVD++SRFTWV+ L +KNDA  SF
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKN
          FAK VQ +KN
Subjt:  SSFAKRVQMKKN

A0A151SIH0 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)

4.2e-35

66.07

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M+ ++ +S+  LV GLPK KF KDK+CDACQ GKQ K+SFKSKN ISTTRPLQL+HMDLFGPSR  S GGNYY  VIVD++SRFTWV+ L +KNDA  +F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKN
          F+K VQ +KN
Subjt:  SSFAKRVQMKKN

A0A1I9RYX3 Integrase (Fragment)

9.3e-51

90.27

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKN+ISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVD+FSRFTWVLM+KHK++ALK+F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
         SF KRVQ +K F
Subjt:  SSFAKRVQMKKNF

A5BKT6 Integrase catalytic domain-containing protein

1.9e-35

67.26

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M LIS ++K+ LVRGLPK  F+KDKVC+ACQMGKQ K+SFK+KN ISTTRPL+LLH DLFGPSR  S GG  YAFVIVD+FSR+TWVL L  KN+A   F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
        S F  +VQ +K F
Subjt:  SSFAKRVQMKKNF

A5BMX7 Integrase catalytic domain-containing protein

5.0e-36

68.14

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Query:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF
        M LIS ++K+ LVRGLPK  F+KDKVC+ACQMGKQ K+SFK+KN ISTTRPL+LLHMDLFGPSR  S GG  YAFVIVD FSR+TWVL L  KN+A   F
Subjt:  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSF

Query:  SSFAKRVQMKKNF
        S F  +VQ +K F
Subjt:  SSFAKRVQMKKNF

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.6e-05

28.09

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Query:  KVCDACQMGKQTKSSFKS-KNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSFSSFAKRVQMKKN
        ++C+ C  GKQ +  FK  K+     RPL ++H D+ GP    +     Y  + VD F+ +    ++K+K+D    F  F  + +   N
Subjt:  KVCDACQMGKQTKSSFKS-KNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSFSSFAKRVQMKKN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.0e-06

35.64

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Query:  LISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSFSS
        L S IS  SL    P  KF     C  C + K  K  F S++ I++TRPL+ ++ D++  S I S     Y  + VD+F+R+TW+  LK K+   ++F +
Subjt:  LISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSFSS

Query:  F
        F
Subjt:  F

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.7e-04

32.08

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Query:  LISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSFSS
        L S IS +SL    P  K      C  C + K  K  F S + I++++PL+ ++ D++  S I S     Y  + VD+F+R+TW+  LK K+    +F  
Subjt:  LISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSFSS

Query:  FAKRVQ
        F   V+
Subjt:  FAKRVQ

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCACTTAATTTCAAATATTTCCAAGAATTCTTTGGTTAGAGGTCTTCCCAAGTTTAAATTTGAAAAAGATAAAGTTTGTGATGCTTGTCAAATGGGTAAGCAAACCAA
GTCTTCTTTCAAATCTAAAAATATGATCTCGACTACAAGACCCCTACAACTATTACACATGGACTTATTTGGCCCTTCTAGAATTGCTAGTTTTGGAGGGAACTATTATG
CCTTTGTGATAGTTGATAATTTTTCAAGATTTACTTGGGTTTTGATGCTAAAACATAAGAATGATGCTTTGAAAAGTTTTTCTAGTTTTGCCAAAAGAGTTCAAATGAAA
AAAAATTTTTGA

mRNA sequence

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Protein sequence

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MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNMISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDNFSRFTWVLMLKHKNDALKSFSSFAKRVQMK
KNF

Moc09g26330 (gene) of Bitter gourd (OHB3-1) v2 genome