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Moc09g26530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g26530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:19797968..19800061
RNA-Seq ExpressionMoc09g26530
SyntenyMoc09g26530
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146366.1 uncharacterized protein LOC111015594 [Momordica charantia]2.5e-4969.64Show/hide
Query:  GEGLAAGEEENKMLCALASIELLP------RLVRAFN--IN---ASQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRV
        GEG     EE+ M   +  +   P        V A N  IN    ++LESLK RW EELPEVL SYRTTPRRSTGET Y +AFGSE VVP EVGMPTP V
Subjt:  GEGLAAGEEENKMLCALASIELLP------RLVRAFN--IN---ASQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRV

Query:  ENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALE
        ENF EQ NSEALLVNLDLLEEKRSHSQLRLVEYQNRMA+YYNARVKVRTFKP +LVLKKVM +VGALE
Subjt:  ENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALE

XP_022156049.1 uncharacterized protein LOC111023017 [Momordica charantia]1.1e-3979.05Show/hide
Query:  GETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALEPNWKGP
        GETPYGLAFGSE ++P E+GMPT RVENFD Q NSEA L+NLDLLEEKRS+SQL+L EYQNRMA+YYN R +VRTFKP DL LKKVM HV ALEPNW+GP
Subjt:  GETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALEPNWKGP

Query:  YRVLK
        YRVLK
Subjt:  YRVLK

XP_022156271.1 uncharacterized protein LOC111023203 [Momordica charantia]2.4e-5279.85Show/hide
Query:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV
        ++LESLK RW EELPEVL SYRT PR STGETPY LA GSE V+P E+GM TPRVENF+EQ NSEALLVNLDLL EKRSHSQLRL EY NRMA YYNARV
Subjt:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV

Query:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK
        KVR FKP DLVLKKVM HV AL+PNW+GPYRVL+
Subjt:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]7.5e-6291.04Show/hide
Query:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV
        ++LESLK +W EELPEVL SYRTTPRRSTGETPYGLAFGSE VVP EVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRL EYQNRMA+YYNARV
Subjt:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV

Query:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK
        KVRTFKPSDLVLKKVM HVGALEPNW+GPYRVLK
Subjt:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]2.7e-3573.68Show/hide
Query:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV
        ++LESLK RW EEL EVL SYRTTPRRSTGETP GLAFGSE V+P E+GM TP+VEN DE  N+EALLVNLDLLEEKRSHSQLRL EYQ         RV
Subjt:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV

Query:  KVRTFKPSDLVLKK
        KV+TF+P DLVLKK
Subjt:  KVRTFKPSDLVLKK

TrEMBL top hitse value%identityAlignment
A0A6J1CZ55 uncharacterized protein LOC1110155941.2e-4969.64Show/hide
Query:  GEGLAAGEEENKMLCALASIELLP------RLVRAFN--IN---ASQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRV
        GEG     EE+ M   +  +   P        V A N  IN    ++LESLK RW EELPEVL SYRTTPRRSTGET Y +AFGSE VVP EVGMPTP V
Subjt:  GEGLAAGEEENKMLCALASIELLP------RLVRAFN--IN---ASQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRV

Query:  ENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALE
        ENF EQ NSEALLVNLDLLEEKRSHSQLRLVEYQNRMA+YYNARVKVRTFKP +LVLKKVM +VGALE
Subjt:  ENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALE

A0A6J1DS38 uncharacterized protein LOC1110230175.1e-4079.05Show/hide
Query:  GETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALEPNWKGP
        GETPYGLAFGSE ++P E+GMPT RVENFD Q NSEA L+NLDLLEEKRS+SQL+L EYQNRMA+YYN R +VRTFKP DL LKKVM HV ALEPNW+GP
Subjt:  GETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALEPNWKGP

Query:  YRVLK
        YRVLK
Subjt:  YRVLK

A0A6J1DUF4 uncharacterized protein LOC1110232031.2e-5279.85Show/hide
Query:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV
        ++LESLK RW EELPEVL SYRT PR STGETPY LA GSE V+P E+GM TPRVENF+EQ NSEALLVNLDLL EKRSHSQLRL EY NRMA YYNARV
Subjt:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV

Query:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK
        KVR FKP DLVLKKVM HV AL+PNW+GPYRVL+
Subjt:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241151.3e-3573.68Show/hide
Query:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV
        ++LESLK RW EEL EVL SYRTTPRRSTGETP GLAFGSE V+P E+GM TP+VEN DE  N+EALLVNLDLLEEKRSHSQLRL EYQ         RV
Subjt:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV

Query:  KVRTFKPSDLVLKK
        KV+TF+P DLVLKK
Subjt:  KVRTFKPSDLVLKK

A0A6J1DWM2 Ribonuclease H3.6e-6291.04Show/hide
Query:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV
        ++LESLK +W EELPEVL SYRTTPRRSTGETPYGLAFGSE VVP EVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRL EYQNRMA+YYNARV
Subjt:  SQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLVEYQNRMAQYYNARV

Query:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK
        KVRTFKPSDLVLKKVM HVGALEPNW+GPYRVLK
Subjt:  KVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATGGCCCGTCACTGCTGCACCTGTTCCACGCTCAGGCCACCGCAAACCCGATGCAATAACCCGCAAGGAAGACGTCGTCGGTCAGGCTGCCATGGATGCTGCTAG
GGAGTTACGCCGACGCTACTCGTGTACGAGGAAGATATCGATTGATGTTGGCACCGCTCGTGGAGAAAACCCACCGGGGAAGACGCCGCCGTGGAGCTCGCTGTCGATGG
AGAAAAAATCGCTGCTGTCGTCGAGATGTTTGTGGAGGGACGCCGCGCCGGAGGTGCCACTGTTGCTGTGCCGCTTCGCCGGAGAACAAGAAGGTGCTGGCTTGGTTGCT
CGAAGAAGAAGAAGAAATCTGGGGGGGGAGGGGCTGGCAGCTGGGGAAGAAGAGAACAAGATGTTGTGTGCGCTTGCATCTATAGAATTGTTACCACGTTTAGTGCGTGC
GTTCAACATAAACGCCAGTCAGCTGGAATCTCTGAAAAGTCGGTGGACAGAGGAGTTACCAGAGGTATTGTGTTCTTACAGAACTACACCCCGCCGATCTACTGGTGAGA
CGCCATACGGCCTAGCCTTCGGGTCGGAGGTTGTCGTTCCTACGGAAGTCGGCATGCCAACGCCCCGAGTTGAGAATTTCGACGAGCAAGCCAACAGTGAAGCTCTACTC
GTGAATCTTGATCTTCTCGAGGAGAAAAGATCTCACTCCCAGCTTCGGCTAGTAGAATATCAGAACCGTATGGCTCAGTACTACAACGCCAGAGTAAAAGTCAGAACGTT
CAAGCCTAGCGACCTCGTCCTCAAGAAGGTAATGCATCATGTCGGAGCACTCGAGCCGAACTGGAAAGGTCCGTACCGAGTCTTAAAAACACCCAACCTTGACCGTATTT
GTTGTCCGACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATGGCCCGTCACTGCTGCACCTGTTCCACGCTCAGGCCACCGCAAACCCGATGCAATAACCCGCAAGGAAGACGTCGTCGGTCAGGCTGCCATGGATGCTGCTAG
GGAGTTACGCCGACGCTACTCGTGTACGAGGAAGATATCGATTGATGTTGGCACCGCTCGTGGAGAAAACCCACCGGGGAAGACGCCGCCGTGGAGCTCGCTGTCGATGG
AGAAAAAATCGCTGCTGTCGTCGAGATGTTTGTGGAGGGACGCCGCGCCGGAGGTGCCACTGTTGCTGTGCCGCTTCGCCGGAGAACAAGAAGGTGCTGGCTTGGTTGCT
CGAAGAAGAAGAAGAAATCTGGGGGGGGAGGGGCTGGCAGCTGGGGAAGAAGAGAACAAGATGTTGTGTGCGCTTGCATCTATAGAATTGTTACCACGTTTAGTGCGTGC
GTTCAACATAAACGCCAGTCAGCTGGAATCTCTGAAAAGTCGGTGGACAGAGGAGTTACCAGAGGTATTGTGTTCTTACAGAACTACACCCCGCCGATCTACTGGTGAGA
CGCCATACGGCCTAGCCTTCGGGTCGGAGGTTGTCGTTCCTACGGAAGTCGGCATGCCAACGCCCCGAGTTGAGAATTTCGACGAGCAAGCCAACAGTGAAGCTCTACTC
GTGAATCTTGATCTTCTCGAGGAGAAAAGATCTCACTCCCAGCTTCGGCTAGTAGAATATCAGAACCGTATGGCTCAGTACTACAACGCCAGAGTAAAAGTCAGAACGTT
CAAGCCTAGCGACCTCGTCCTCAAGAAGGTAATGCATCATGTCGGAGCACTCGAGCCGAACTGGAAAGGTCCGTACCGAGTCTTAAAAACACCCAACCTTGACCGTATTT
GTTGTCCGACCTAA
Protein sequenceShow/hide protein sequence
MPWPVTAAPVPRSGHRKPDAITRKEDVVGQAAMDAARELRRRYSCTRKISIDVGTARGENPPGKTPPWSSLSMEKKSLLSSRCLWRDAAPEVPLLLCRFAGEQEGAGLVA
RRRRRNLGGEGLAAGEEENKMLCALASIELLPRLVRAFNINASQLESLKSRWTEELPEVLCSYRTTPRRSTGETPYGLAFGSEVVVPTEVGMPTPRVENFDEQANSEALL
VNLDLLEEKRSHSQLRLVEYQNRMAQYYNARVKVRTFKPSDLVLKKVMHHVGALEPNWKGPYRVLKTPNLDRICCPT