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Moc09g26610 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g26610
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr9:19839850..19840897
RNA-Seq ExpressionMoc09g26610
SyntenyMoc09g26610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150028.1 uncharacterized protein LOC111018300 [Momordica charantia]7.2e-3755.81Show/hide
Query:  IKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG------
        ++Q  +EI +  + ++ E   RM AP SK+ K RY LFHRDHDHAT D FDLK++V+ LI+RGYLKEYVEDPK  QNGEND KSPA+EIRTIMG      
Subjt:  IKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG------

Query:  ---------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
                                   +QP KI+FSEDEATHLLHPHND LVITLKIANA V  RILV+G S
Subjt:  ---------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

XP_022153678.1 uncharacterized protein LOC111021131 [Momordica charantia]5.2e-3560.26Show/hide
Query:  RMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG---------------------------
        RMKA PSK++K RY LFHRDHDHATLD FDLKE+VEGLI R YLK+YVEDPK  QN  N+CKSPA+EIRTIMG                           
Subjt:  RMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG---------------------------

Query:  ------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
              EQP KI+F EDEATHLLH HNDALVITL+IANA V   ILV+G S
Subjt:  ------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]1.2e-4265.56Show/hide
Query:  VKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQE
        +K  PT   +  ++Q  +EI    + ++ E   RMKAPPSK+ K +Y+LFHRDH HAT D FDLKE+VEGLIR GYLKEYVEDPK  QNGEND  SP +E
Subjt:  VKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQE

Query:  IRTIMGEQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
        IRTIM EQP K++FSEDEATHL HPHNDALVITLKIANA V  RILV+G S
Subjt:  IRTIMGEQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

XP_022157426.1 uncharacterized protein LOC111024127 [Momordica charantia]2.3e-3565.41Show/hide
Query:  RFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG--------EQPTKIKFSEDE
        RF +   RMKAPP K+ K RY L HRDH +AT D FDLKE+VEGL+R GYLKEYVEDPK  QN ENDCK+PA+EIRTIMG        +   +I+FSED+
Subjt:  RFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG--------EQPTKIKFSEDE

Query:  ATHLLHPHNDALVITLKIANALVITRILVNGSS
         THLLHPHNDALVI LKIA+A V  RILV+G S
Subjt:  ATHLLHPHNDALVITLKIANALVITRILVNGSS

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.2e-3451.05Show/hide
Query:  DPVRRRVKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDC
        DP R+  K  PT   +  ++Q  +EI    + ++ E   RMK P +K+ K RY LFHRDH+HAT DYFDLKE+VEGLIRRGYL+EYVE+PK  QNGE++ 
Subjt:  DPVRRRVKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDC

Query:  KSPAQEIRTIMG---------------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
        KSPA+EIRTIMG                                  +   I+FSEDEATHLLHPHNDALVITLKIAN + + RILV+G S
Subjt:  KSPAQEIRTIMG---------------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

TrEMBL top hitse value%identityAlignment
A0A6J1D8C9 uncharacterized protein LOC1110183003.5e-3755.81Show/hide
Query:  IKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG------
        ++Q  +EI +  + ++ E   RM AP SK+ K RY LFHRDHDHAT D FDLK++V+ LI+RGYLKEYVEDPK  QNGEND KSPA+EIRTIMG      
Subjt:  IKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG------

Query:  ---------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
                                   +QP KI+FSEDEATHLLHPHND LVITLKIANA V  RILV+G S
Subjt:  ---------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

A0A6J1DI42 uncharacterized protein LOC1110211312.5e-3560.26Show/hide
Query:  RMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG---------------------------
        RMKA PSK++K RY LFHRDHDHATLD FDLKE+VEGLI R YLK+YVEDPK  QN  N+CKSPA+EIRTIMG                           
Subjt:  RMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG---------------------------

Query:  ------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
              EQP KI+F EDEATHLLH HNDALVITL+IANA V   ILV+G S
Subjt:  ------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

A0A6J1DP33 uncharacterized protein LOC1110228865.6e-4365.56Show/hide
Query:  VKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQE
        +K  PT   +  ++Q  +EI    + ++ E   RMKAPPSK+ K +Y+LFHRDH HAT D FDLKE+VEGLIR GYLKEYVEDPK  QNGEND  SP +E
Subjt:  VKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQE

Query:  IRTIMGEQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
        IRTIM EQP K++FSEDEATHL HPHNDALVITLKIANA V  RILV+G S
Subjt:  IRTIMGEQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

A0A6J1DY17 uncharacterized protein LOC1110241271.1e-3565.41Show/hide
Query:  RFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG--------EQPTKIKFSEDE
        RF +   RMKAPP K+ K RY L HRDH +AT D FDLKE+VEGL+R GYLKEYVEDPK  QN ENDCK+PA+EIRTIMG        +   +I+FSED+
Subjt:  RFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMG--------EQPTKIKFSEDE

Query:  ATHLLHPHNDALVITLKIANALVITRILVNGSS
         THLLHPHNDALVI LKIA+A V  RILV+G S
Subjt:  ATHLLHPHNDALVITLKIANALVITRILVNGSS

A0A6J1DYL6 uncharacterized protein LOC1110257855.6e-3551.05Show/hide
Query:  DPVRRRVKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDC
        DP R+  K  PT   +  ++Q  +EI    + ++ E   RMK P +K+ K RY LFHRDH+HAT DYFDLKE+VEGLIRRGYL+EYVE+PK  QNGE++ 
Subjt:  DPVRRRVKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDLKEDVEGLIRRGYLKEYVEDPKVMQNGENDC

Query:  KSPAQEIRTIMG---------------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS
        KSPA+EIRTIMG                                  +   I+FSEDEATHLLHPHNDALVITLKIAN + + RILV+G S
Subjt:  KSPAQEIRTIMG---------------------------------EQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGTGTTCTTGACAACTTTGAGTGGGTCAACCAGGGTATGGTTTCGACAGCTGAAGCGAGGTTCGATCTCGAGTTTCAAGAACCTAGCCAAGGCATTTGT
GACCCAGTTCGTAGGAGGGTGAAGCCGAAGCCGACCCGTGGCTTATCTTCTGACATCAAACAGAGGGCAATAGAGATCCTTCACGACTATGTGGCTCGATTTAAT
GAGGACAAGTATAGGATGAAAGCACCACCAAGTAAAAAAAGGAAGGAGCGATATTACCTTTTCCATCGAGACCACGACCATGCTACTCTGGATTACTTCGATCTC
AAAGAAGACGTGGAAGGACTCATCCGGAGAGGATATCTCAAAGAATATGTGGAGGATCCTAAAGTAATGCAAAATGGTGAGAACGACTGTAAGTCACCCGCTCAA
GAAATCCGAACAATAATGGGAGAACAACCGACAAAAATCAAGTTCTCAGAGGATGAGGCGACTCACCTCCTCCACCCACATAACGATGCACTGGTCATTACTCTG
AAAATAGCCAATGCACTGGTCATCACTCGGATCTTGGTAAATGGGTCATCCCAAAAGGGAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGTGTTCTTGACAACTTTGAGTGGGTCAACCAGGGTATGGTTTCGACAGCTGAAGCGAGGTTCGATCTCGAGTTTCAAGAACCTAGCCAAGGCATTTGT
GACCCAGTTCGTAGGAGGGTGAAGCCGAAGCCGACCCGTGGCTTATCTTCTGACATCAAACAGAGGGCAATAGAGATCCTTCACGACTATGTGGCTCGATTTAAT
GAGGACAAGTATAGGATGAAAGCACCACCAAGTAAAAAAAGGAAGGAGCGATATTACCTTTTCCATCGAGACCACGACCATGCTACTCTGGATTACTTCGATCTC
AAAGAAGACGTGGAAGGACTCATCCGGAGAGGATATCTCAAAGAATATGTGGAGGATCCTAAAGTAATGCAAAATGGTGAGAACGACTGTAAGTCACCCGCTCAA
GAAATCCGAACAATAATGGGAGAACAACCGACAAAAATCAAGTTCTCAGAGGATGAGGCGACTCACCTCCTCCACCCACATAACGATGCACTGGTCATTACTCTG
AAAATAGCCAATGCACTGGTCATCACTCGGATCTTGGTAAATGGGTCATCCCAAAAGGGAGAATAG
Protein sequenceShow/hide protein sequence
MSGVLDNFEWVNQGMVSTAEARFDLEFQEPSQGICDPVRRRVKPKPTRGLSSDIKQRAIEILHDYVARFNEDKYRMKAPPSKKRKERYYLFHRDHDHATLDYFDL
KEDVEGLIRRGYLKEYVEDPKVMQNGENDCKSPAQEIRTIMGEQPTKIKFSEDEATHLLHPHNDALVITLKIANALVITRILVNGSSQKGE