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Moc09g26680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g26680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr9:19898049..19898483
RNA-Seq ExpressionMoc09g26680
SyntenyMoc09g26680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1545.39Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAK------EMMDALF-NSSSESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADMEKRLYMLMKMVEEKDYK
        M  K+A+S   ++SD+Y GPITR+R+K      +  + L+ NS S S  +   AH      P++M SVMMAD  T E  MA+ME+++  LMK+VEE+D++
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAK------EMMDALF-NSSSESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADMEKRLYMLMKMVEEKDYK

Query:  IASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        I +L  ++  ++ AESSQ    K ++K KN VQE Q Q+ SVS+ASLSVQQL
Subjt:  IASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

KAA0066578.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-1541.42Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAK--------------EMMDALFNSSSESEFA----------HSSAHHKGTSTPNVMYSVMMADASTMEEKMADM
        M  K+A+SK  V+SD+Y+GPITR+R+K               ++  L  S     F            +S+  K  + P+VM SVMMAD ST E  M DM
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAK--------------EMMDALFNSSSESEFA----------HSSAHHKGTSTPNVMYSVMMADASTMEEKMADM

Query:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQE-EQQEHSVSIASLSVQQL
        E+++  LMK++EE+D++I +L +++  ++ A+SSQ L  K ++K+KN VQE +QQ+ SVS+ASLSVQQL
Subjt:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQE-EQQEHSVSIASLSVQQL

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.4e-1338.46Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAKEMMDALFNSSS------------------------ESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADM
        M  K+A+SK   +SD+Y GPITR+R+K ++      S+                         +++  +S+     + P+VM SVMMAD + +E  MA+M
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAKEMMDALFNSSS------------------------ESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADM

Query:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        E+++ +LMK+V+E+D++IA+L  +++ ++ AESSQ    KV +K KN VQE Q Q+ S S+ASLSVQQL
Subjt:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.4e-1338.46Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAKEMMDALFNSSS------------------------ESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADM
        M  K+A+SK   +SD+Y GPITR+R+K ++      S+                         +++  +S+     + P+VM SVMMAD + +E  MA+M
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAKEMMDALFNSSS------------------------ESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADM

Query:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        E+++ +LMK+V+E+D++IA+L  +++ ++ AESSQ    KV +K KN VQE Q Q+ S S+ASLSVQQL
Subjt:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.4e-1338.46Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAKEMMDALFNSSS------------------------ESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADM
        M  K+A+SK   +SD+Y GPITR+R+K ++      S+                         +++  +S+     + P+VM SVMMAD + +E  MA+M
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAKEMMDALFNSSS------------------------ESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADM

Query:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        E+++ +LMK+V+E+D++IA+L  +++ ++ AESSQ    KV +K KN VQE Q Q+ S S+ASLSVQQL
Subjt:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

TrEMBL top hitse value%identityAlignment
A0A5A7TYE9 Ty3-gypsy retrotransposon protein9.5e-1645.39Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAK------EMMDALF-NSSSESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADMEKRLYMLMKMVEEKDYK
        M  K+A+S   ++SD+Y GPITR+R+K      +  + L+ NS S S  +   AH      P++M SVMMAD  T E  MA+ME+++  LMK+VEE+D++
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAK------EMMDALF-NSSSESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADMEKRLYMLMKMVEEKDYK

Query:  IASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        I +L  ++  ++ AESSQ    K ++K KN VQE Q Q+ SVS+ASLSVQQL
Subjt:  IASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

A0A5A7UF60 Ty3-gypsy retrotransposon protein4.4e-1339.64Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAK----------EMMDALFNSSSESEFAH--------------SSAHHKGTSTPNVMYSVMMADASTMEEKMADM
        M  K+ +S   V+SD+Y GPITR+R+K           ++ ++     ES  A               +S+  K  + P+VM SVMMAD  T+E  MA+M
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAK----------EMMDALFNSSSESEFAH--------------SSAHHKGTSTPNVMYSVMMADASTMEEKMADM

Query:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        EK++  LMK VEE+D++I +L  ++  ++ AESSQ    K ++K KN VQE Q Q+ S+S+ASLS+QQL
Subjt:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

A0A5A7VCU1 Ty3-gypsy retrotransposon protein8.9e-1440.24Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAK----------EMMDALFNSSSESEFA--------------HSSAHHKGTSTPNVMYSVMMADASTMEEKMADM
        M  K+A+S+  V+SD Y GPITRNR+K          ++  ++     ES  A               +S+  K    P+VM SVMM D  T E  MA+M
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAK----------EMMDALFNSSSESEFA--------------HSSAHHKGTSTPNVMYSVMMADASTMEEKMADM

Query:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        E+++  LMK+VEE+D++I +L  +++ ++  ESSQ    K ++K KN VQE Q Q+ SVS+ASLSVQQL
Subjt:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein1.2e-1541.42Show/hide
Query:  MTFKEASSKIDVSSDSYLGPITRNRAK--------------EMMDALFNSSSESEFA----------HSSAHHKGTSTPNVMYSVMMADASTMEEKMADM
        M  K+A+SK  V+SD+Y+GPITR+R+K               ++  L  S     F            +S+  K  + P+VM SVMMAD ST E  M DM
Subjt:  MTFKEASSKIDVSSDSYLGPITRNRAK--------------EMMDALFNSSSESEFA----------HSSAHHKGTSTPNVMYSVMMADASTMEEKMADM

Query:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQE-EQQEHSVSIASLSVQQL
        E+++  LMK++EE+D++I +L +++  ++ A+SSQ L  K ++K+KN VQE +QQ+ SVS+ASLSVQQL
Subjt:  EKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESSQNLAAKVSEKKKNTVQE-EQQEHSVSIASLSVQQL

A0A5D3BLM3 Retrotransposon gag protein9.8e-1342.07Show/hide
Query:  EASSKIDVSSDSYLGPITRNRAKEMMDALFNSSSESEF----AHSSAHHKGTSTPNVMYSVMMADASTMEEKMADMEKRLYMLMKMVEEKDYKIASLMNK
        +A+SK  ++SD+Y  PITR+R+K +       S+ ++        S   K  + P+VMY VMMAD +T E  M +ME+++  L+K+VEE+D++I +L  +
Subjt:  EASSKIDVSSDSYLGPITRNRAKEMMDALFNSSSESEF----AHSSAHHKGTSTPNVMYSVMMADASTMEEKMADMEKRLYMLMKMVEEKDYKIASLMNK

Query:  IEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL
        ++ ++  ESSQ L  K   K KN VQE Q Q+ SVS+ASL VQQL
Subjt:  IEAQDVAESSQNLAAKVSEKKKNTVQEEQ-QEHSVSIASLSVQQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTCAAGGAAGCTTCATCCAAGATTGATGTTTCAAGCGACTCTTACTTGGGCCCAATTACTCGCAACCGAGCCAAAGAAATGATGGATGCCCTGTTCAACTCCAG
CTCGGAGAGTGAATTCGCTCATTCCTCTGCACATCACAAGGGGACATCTACTCCGAACGTCATGTACTCTGTCATGATGGCTGATGCATCCACCATGGAAGAAAAAATGG
CGGATATGGAGAAGAGACTCTACATGCTGATGAAGATGGTTGAGGAAAAGGATTACAAGATCGCTTCCCTCATGAACAAGATCGAAGCTCAAGACGTTGCTGAATCCAGC
CAGAATCTTGCTGCAAAAGTCAGTGAGAAAAAAAAGAACACCGTGCAAGAAGAACAACAAGAACATTCTGTCTCAATTGCTTCACTGTCCGTCCAACAGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATTCAAGGAAGCTTCATCCAAGATTGATGTTTCAAGCGACTCTTACTTGGGCCCAATTACTCGCAACCGAGCCAAAGAAATGATGGATGCCCTGTTCAACTCCAG
CTCGGAGAGTGAATTCGCTCATTCCTCTGCACATCACAAGGGGACATCTACTCCGAACGTCATGTACTCTGTCATGATGGCTGATGCATCCACCATGGAAGAAAAAATGG
CGGATATGGAGAAGAGACTCTACATGCTGATGAAGATGGTTGAGGAAAAGGATTACAAGATCGCTTCCCTCATGAACAAGATCGAAGCTCAAGACGTTGCTGAATCCAGC
CAGAATCTTGCTGCAAAAGTCAGTGAGAAAAAAAAGAACACCGTGCAAGAAGAACAACAAGAACATTCTGTCTCAATTGCTTCACTGTCCGTCCAACAGCTCTAA
Protein sequenceShow/hide protein sequence
MTFKEASSKIDVSSDSYLGPITRNRAKEMMDALFNSSSESEFAHSSAHHKGTSTPNVMYSVMMADASTMEEKMADMEKRLYMLMKMVEEKDYKIASLMNKIEAQDVAESS
QNLAAKVSEKKKNTVQEEQQEHSVSIASLSVQQL