; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g26810 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g26810
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr9:20050901..20067568
RNA-Seq ExpressionMoc09g26810
SyntenyMoc09g26810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.0e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

A0A5A7TU93 Gag/pol protein3.0e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

A0A5A7TWB9 Gag/pol protein3.0e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

A0A5A7V4M1 Gag/pol protein3.0e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

A0A5D3CPJ6 Gag/pol protein3.0e-4849.43Show/hide
Query:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK
        A  KA+  ILAS+S+VL++KHE  +TA+EI+DSLQ MFGQ S Q +   LK                             NG VIDE SQVSFILESLP+
Subjt:  ATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLK----------------------------SNGTVIDEQSQVSFILESLPK

Query:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK
        SFL F SNAVMNK+ YTLTTL+NELQT+    K                                     KKK  G+G+K +   AAAK  K   A KG 
Subjt:  SFLAFHSNAVMNKLKYTLTTLINELQTYHKTFK-------------------------------------KKKAAGKGSKPDSVAAAAKKGKGKVADKGK

Query:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ
        CFH N +G+WKRNCPKYL EKKK+ +GKYDLLVL+TCLVEND    I DSG TNHVCSSFQ
Subjt:  CFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVEND----ISDSGVTNHVCSSFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATGAAGAAAAGGAAGGTAACATATCAGATAGTAGGATGAGAGAAGCCCAACAAAGAGCTATGGAGCGAATGATTCGTACCATGGAAGAGATATTAAAACAAAT
GCATAGGTTGGAGGTTCAAAACCAGAGAAGGATACCACCATCACCACGTGTTATGGATGACCATTTTTTATATCGAGAAAATGAATCTGAGGAAGGTGGGTTTGATCAAC
TAGAGGATGACCAAGTTACCTTGTTAGCTGCACATAGCAGGGGAGATAGACATGCTGGTCATTGCTTGGATAGAGGAAGAAGTCGTGGAAGACATTACAATTATCAGAGG
AGAGCTCACGAGAAGAGGCTCAAGGAGGATCCTTCTCTCCCTCTAGTTCCTGTGATGGTGAATGGTGGTAGGGTGTCGGGGATCTCCCCATTTGATGCTAATAGTGCGTT
GCGACTGACAAAATCAAAGTCAACATCATTACGTATGTTCAGAGAACTTACGTGGTTCCGAGGCAAGGATGACGAAGTAGAAGTCCGGGTCATTCGTGAAAAAGAGTTGC
TGCGAAGAAAGGCCGGGTTTCGAGTTTTTTGGAGCATTTTCACTGCTGGAACAGAGAGCAGAGCAGCAGGTCCGTACAACAGCGCCGTGGCGTTGCAACATTTTTCCAAC
AAGCGTCGTGACGCTGCAGCTGCTAGAATTTGCTGCAGCAGCACCGCGACGATCAAGGCCAAGGTCTGCATCTTGGCGAGCATATCTGATGTGCTTTCTAGAAAGCACGA
GGACACGGTCACCGCTAAGGAGATCGTGGACTCGTTGCAGAGCATGTTTGGACAACCATCCTCTCAGGCTCGCATGAAGCCTTTAAAGTCGAACGGGACCGTCATAGACG
AGCAGAGTCAGGTCAGCTTCATTTTGGAATCTCTTCCGAAGAGTTTCCTGGCATTCCACAGCAATGCGGTTATGAATAAGCTGAAGTACACTCTTACCACGCTCATAAAC
GAGCTGCAGACCTACCATAAGACTTTCAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCGTTGCTGCCGCTGCCAAGAAAGGCAAGGGCAAGGTTGCAGA
CAAAGGAAAGTGTTTCCACTACAACGTGGACGGGTATTGGAAGCGCAATTGCCCGAAATACCTGGTCGAGAAGAAGAAATCCAATGAAGGTAAATATGATTTACTTGTTT
TGAAAACTTGTTTAGTAGAGAATGATATATCAGATTCAGGAGTCACTAATCATGTTTGTTCTTCGTTTCAGGAATTAGTTCCTGGAGGTAAAGAGTATACAACATCGGAA
AATGTTAGGAAAATTCTTAGGTTGCTTCCTAAGACTTGGGAAGCAAAGGTGACGAGAATCCAAGAAGCGAAGGATCTCACTAAACTTCCTTTGGAGGAACTTATAGGCTC
ACTTATGACTCATGAGATTACCATAAAGGAGCACTTGGACGATGAGTCCAAAAAGAAGAAAAGTATTGCTTTAAAGTCCACATACATCCAAGAGGAGTCCAATGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAATGAAGAAAAGGAAGGTAACATATCAGATAGTAGGATGAGAGAAGCCCAACAAAGAGCTATGGAGCGAATGATTCGTACCATGGAAGAGATATTAAAACAAAT
GCATAGGTTGGAGGTTCAAAACCAGAGAAGGATACCACCATCACCACGTGTTATGGATGACCATTTTTTATATCGAGAAAATGAATCTGAGGAAGGTGGGTTTGATCAAC
TAGAGGATGACCAAGTTACCTTGTTAGCTGCACATAGCAGGGGAGATAGACATGCTGGTCATTGCTTGGATAGAGGAAGAAGTCGTGGAAGACATTACAATTATCAGAGG
AGAGCTCACGAGAAGAGGCTCAAGGAGGATCCTTCTCTCCCTCTAGTTCCTGTGATGGTGAATGGTGGTAGGGTGTCGGGGATCTCCCCATTTGATGCTAATAGTGCGTT
GCGACTGACAAAATCAAAGTCAACATCATTACGTATGTTCAGAGAACTTACGTGGTTCCGAGGCAAGGATGACGAAGTAGAAGTCCGGGTCATTCGTGAAAAAGAGTTGC
TGCGAAGAAAGGCCGGGTTTCGAGTTTTTTGGAGCATTTTCACTGCTGGAACAGAGAGCAGAGCAGCAGGTCCGTACAACAGCGCCGTGGCGTTGCAACATTTTTCCAAC
AAGCGTCGTGACGCTGCAGCTGCTAGAATTTGCTGCAGCAGCACCGCGACGATCAAGGCCAAGGTCTGCATCTTGGCGAGCATATCTGATGTGCTTTCTAGAAAGCACGA
GGACACGGTCACCGCTAAGGAGATCGTGGACTCGTTGCAGAGCATGTTTGGACAACCATCCTCTCAGGCTCGCATGAAGCCTTTAAAGTCGAACGGGACCGTCATAGACG
AGCAGAGTCAGGTCAGCTTCATTTTGGAATCTCTTCCGAAGAGTTTCCTGGCATTCCACAGCAATGCGGTTATGAATAAGCTGAAGTACACTCTTACCACGCTCATAAAC
GAGCTGCAGACCTACCATAAGACTTTCAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCGTTGCTGCCGCTGCCAAGAAAGGCAAGGGCAAGGTTGCAGA
CAAAGGAAAGTGTTTCCACTACAACGTGGACGGGTATTGGAAGCGCAATTGCCCGAAATACCTGGTCGAGAAGAAGAAATCCAATGAAGGTAAATATGATTTACTTGTTT
TGAAAACTTGTTTAGTAGAGAATGATATATCAGATTCAGGAGTCACTAATCATGTTTGTTCTTCGTTTCAGGAATTAGTTCCTGGAGGTAAAGAGTATACAACATCGGAA
AATGTTAGGAAAATTCTTAGGTTGCTTCCTAAGACTTGGGAAGCAAAGGTGACGAGAATCCAAGAAGCGAAGGATCTCACTAAACTTCCTTTGGAGGAACTTATAGGCTC
ACTTATGACTCATGAGATTACCATAAAGGAGCACTTGGACGATGAGTCCAAAAAGAAGAAAAGTATTGCTTTAAAGTCCACATACATCCAAGAGGAGTCCAATGATTAG
Protein sequenceShow/hide protein sequence
MANEEKEGNISDSRMREAQQRAMERMIRTMEEILKQMHRLEVQNQRRIPPSPRVMDDHFLYRENESEEGGFDQLEDDQVTLLAAHSRGDRHAGHCLDRGRSRGRHYNYQR
RAHEKRLKEDPSLPLVPVMVNGGRVSGISPFDANSALRLTKSKSTSLRMFRELTWFRGKDDEVEVRVIREKELLRRKAGFRVFWSIFTAGTESRAAGPYNSAVALQHFSN
KRRDAAAARICCSSTATIKAKVCILASISDVLSRKHEDTVTAKEIVDSLQSMFGQPSSQARMKPLKSNGTVIDEQSQVSFILESLPKSFLAFHSNAVMNKLKYTLTTLIN
ELQTYHKTFKKKKAAGKGSKPDSVAAAAKKGKGKVADKGKCFHYNVDGYWKRNCPKYLVEKKKSNEGKYDLLVLKTCLVENDISDSGVTNHVCSSFQELVPGGKEYTTSE
NVRKILRLLPKTWEAKVTRIQEAKDLTKLPLEELIGSLMTHEITIKEHLDDESKKKKSIALKSTYIQEESND