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Moc09g26980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g26980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Genome locationchr9:20235416..20242468
RNA-Seq ExpressionMoc09g26980
SyntenyMoc09g26980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150097.1 uncharacterized protein LOC111018357 [Momordica charantia]6.1e-2376.25Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEF
        MKVN+EQ  FNVLDAMRLPDE+EEC TIQITN VSMEEFCDL+  GLEQELE ++ ERE DTF S +EKFE GDLS DEF
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEF

XP_030479560.1 uncharacterized protein LOC115696816 [Cannabis sativa]1.2e-1340.41Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEF------CDLISAGLEQELEASENERETDT--------FSSLVEKFEVGDLSKDEFNAMQPS
        M+VN+++  FNV +AMR PDE+++C  + + + +  E F       + +   LE +LEA   + E           F      FE  +L +  F   +PS
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEF------CDLISAGLEQELEASENERETDT--------FSSLVEKFEVGDLSKDEFNAMQPS

Query:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQL
        I EPP LE K LP++LKYAYLG+NETL VIISA L  E E LLL++
Subjt:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQL

XP_030485610.1 uncharacterized protein LOC115702304 [Cannabis sativa]2.0e-1340.41Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEF------CDLISAGLEQELEASENERETDT--------FSSLVEKFEVGDLSKDEFNAMQPS
        M+VN+++  FNV +AMR  DE+EEC  + + + +  E F       + + + LE +LEA   + ET                 FE  +L +  F   +PS
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEF------CDLISAGLEQELEASENERETDT--------FSSLVEKFEVGDLSKDEFNAMQPS

Query:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQL
        I EPP+LE K LP++LKYAYLGENE L +IISA L  E E LLL++
Subjt:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQL

XP_030504461.1 uncharacterized protein LOC115719521 [Cannabis sativa]1.5e-1643.15Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEF------CDLISAGLEQELEASENERETDT--------FSSLVEKFEVGDLSKDEFNAMQPS
        M+VN+++  FNV +AMR PDE+EEC  + + + +  E F       + + + LE +LEA   + ET          F      FE  +L +  F  ++PS
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEF------CDLISAGLEQELEASENERETDT--------FSSLVEKFEVGDLSKDEFNAMQPS

Query:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQL
        I EPP+LE K LP++LKYAYLGENETL VIISA L  E E LLL++
Subjt:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQL

XP_030506603.1 uncharacterized protein LOC115721515 [Cannabis sativa]5.8e-1341.67Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEFNAMQPSIIEPPRLEQKHLPT
        M+VN++Q  FNV +AMR PDE+EEC  I     V+  E                        F+     FE  +LS++ F   +PSI EPP LE K LP+
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEFNAMQPSIIEPPRLEQKHLPT

Query:  YLKYAYLGENETLLVIISAMLTNEHEILLLQL
        +LKY YLG+ ETL VIISAML  + E LL+ +
Subjt:  YLKYAYLGENETLLVIISAMLTNEHEILLLQL

TrEMBL top hitse value%identityAlignment
A0A2G9GC30 DNA-directed DNA polymerase1.1e-0939.52Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQI-TNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEFNAMQPSIIEPPRLEQKHLP
        MKV ++Q  FNVL AM+ P+E +EC ++ I  N    E         LE+ L      +   T    VE  E    SK     ++PSI EPP LE KH P
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQI-TNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEFNAMQPSIIEPPRLEQKHLP

Query:  TYLKYAYLGENETLLVIISAMLTN
         YL+Y Y+GE++TL +IIS+ L++
Subjt:  TYLKYAYLGENETLLVIISAMLTN

A0A5B6UQJ0 Retrovirus-related Pol polyprotein from transposon opus3.4e-1134.03Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEE---FCDLISAGLEQELEASENERETDTFSSLVE----------KFEVGDLSKDEFNAMQPSI
        ++VN++Q  FNV DAM+  D  E+C TI+I +    EE   FC   S      +E +E E   +  S L+E           FE  +LS+  F   +PSI
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEE---FCDLISAGLEQELEASENERETDTFSSLVE----------KFEVGDLSKDEFNAMQPSI

Query:  IEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQLHLESAEE-------VKFAHGEKAVYMPKSDLREDRPTRNLTGPLLC
           P LE K LP +L Y YLG+N TL V+IS  LT++ E+ LL++   S +        V+    ++ V +   D  E  PT  +T   +C
Subjt:  IEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQLHLESAEE-------VKFAHGEKAVYMPKSDLREDRPTRNLTGPLLC

A0A5B6URH9 Retrovirus-related Pol polyprotein from transposon 17.66.4e-1033.84Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEE---FC-----------DLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEFNAMQPS
        M VN++Q  FNV DA++  DE EEC  I   + +  EE   FC           +L   G+ +EL      ++ +  S     FE  DLS   F   +PS
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEE---FC-----------DLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEFNAMQPS

Query:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQLHLESAEEV---------KFAHGEKA--------VYMPKSDLREDRPTRNLTG
        I  P  LE K  P +LKYAYLG+N TL ++ISA LT + +  LL++ L+ +++V         +   GE +        V +  +D  E  PTR +TG
Subjt:  IIEPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQLHLESAEEV---------KFAHGEKA--------VYMPKSDLREDRPTRNLTG

A0A5B6WI37 Retrovirus-related Pol polyprotein from transposon opus8.4e-1039.31Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASE-NERE-TDTFSSLVE----------KFEVGDLSKDEFNAMQPSII
        M+VN++Q  FNV DAM+  D  E+C  I I + V  EE         + E+ + E NE E  +  S L+E           FE  +LS+  F   +PS+ 
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASE-NERE-TDTFSSLVE----------KFEVGDLSKDEFNAMQPSII

Query:  EPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQLH
        + P LE K  P +LKYAYLG N T  V+ISA LT++ E    QLH
Subjt:  EPPRLEQKHLPTYLKYAYLGENETLLVIISAMLTNEHEILLLQLH

A0A6J1D9S6 uncharacterized protein LOC1110183573.0e-2376.25Show/hide
Query:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEF
        MKVN+EQ  FNVLDAMRLPDE+EEC TIQITN VSMEEFCDL+  GLEQELE ++ ERE DTF S +EKFE GDLS DEF
Subjt:  MKVNNEQ-AFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGAACAATGAGCAGGCATTCAATGTACTGGATGCTATGCGACTTCCAGATGAAGTAGAAGAGTGCTTGACCATTCAGATAACTAACCCTGTGTCTATG
GAAGAATTTTGTGATTTGATATCTGCAGGTTTAGAGCAAGAATTAGAAGCATCGGAAAATGAAAGAGAGACAGACACTTTCTCGTCACTAGTGGAGAAGTTCGAG
GTTGGAGATTTGAGCAAGGATGAATTTAACGCAATGCAACCATCAATCATTGAGCCGCCTCGACTAGAACAAAAACACTTGCCTACTTATTTAAAATATGCATAC
TTAGGAGAAAATGAAACTTTACTTGTAATCATCTCTGCAATGTTAACTAATGAACATGAAATTTTGTTGTTGCAGCTCCACCTCGAATCTGCCGAAGAGGTCAAG
TTCGCCCATGGAGAAAAGGCTGTGTACATGCCGAAGTCCGATCTGAGGGAGGACCGACCTACCCGAAACCTAACAGGTCCACTCTTGTGTTCAGGTCGAGCTGGA
GACCAGGTTCGAGCTTGGTTCGTGAATTATCGTTGTGCAGACCCTTGCATAAACATTTGGCACCGTCTGTGGGAAAGGACGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTGAACAATGAGCAGGCATTCAATGTACTGGATGCTATGCGACTTCCAGATGAAGTAGAAGAGTGCTTGACCATTCAGATAACTAACCCTGTGTCTATG
GAAGAATTTTGTGATTTGATATCTGCAGGTTTAGAGCAAGAATTAGAAGCATCGGAAAATGAAAGAGAGACAGACACTTTCTCGTCACTAGTGGAGAAGTTCGAG
GTTGGAGATTTGAGCAAGGATGAATTTAACGCAATGCAACCATCAATCATTGAGCCGCCTCGACTAGAACAAAAACACTTGCCTACTTATTTAAAATATGCATAC
TTAGGAGAAAATGAAACTTTACTTGTAATCATCTCTGCAATGTTAACTAATGAACATGAAATTTTGTTGTTGCAGCTCCACCTCGAATCTGCCGAAGAGGTCAAG
TTCGCCCATGGAGAAAAGGCTGTGTACATGCCGAAGTCCGATCTGAGGGAGGACCGACCTACCCGAAACCTAACAGGTCCACTCTTGTGTTCAGGTCGAGCTGGA
GACCAGGTTCGAGCTTGGTTCGTGAATTATCGTTGTGCAGACCCTTGCATAAACATTTGGCACCGTCTGTGGGAAAGGACGATCTAA
Protein sequenceShow/hide protein sequence
MKVNNEQAFNVLDAMRLPDEVEECLTIQITNPVSMEEFCDLISAGLEQELEASENERETDTFSSLVEKFEVGDLSKDEFNAMQPSIIEPPRLEQKHLPTYLKYAY
LGENETLLVIISAMLTNEHEILLLQLHLESAEEVKFAHGEKAVYMPKSDLREDRPTRNLTGPLLCSGRAGDQVRAWFVNYRCADPCINIWHRLWERTI