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Moc09g27450 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g27450
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr9:20548421..20549125
RNA-Seq ExpressionMoc09g27450
SyntenyMoc09g27450
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8376937.1 hypothetical protein BUALT_Bualt09G0116000 [Buddleja alternifolia]4.6e-0635.11Show/hide
Query:  NIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDL
        NI++E +T     + +   ++IPN R N++S GK DDDGY S F  G WKL + S +   G K++S+Y+ +  +S G     ++ A++ S  +L
Subjt:  NIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDL

KAG8385976.1 hypothetical protein BUALT_Bualt03G0101100 [Buddleja alternifolia]3.5e-0635.11Show/hide
Query:  NIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDL
        NI++E +T     + +   ++IP+ RFN++S GK DDDGY S F  G WKL + S +   G K++S+Y+ +  +S G     ++ A++ S  +L
Subjt:  NIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDL

PNX95528.1 putative gag/pol polyprotein [Trifolium pratense]3.5e-0644.29Show/hide
Query:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSK
        ET   + + +   ++IP  RFNLLSVG+ D++GY + F    WKLK+ S VV  G K S++YV +  VSK
Subjt:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSK

XP_022152155.1 cinnamoyl-CoA reductase-like SNL6 [Momordica charantia]7.1e-1546.67Show/hide
Query:  VVVIGHKRSSVYVSEFAVSKGSERQRMHRAID-GSGRDLKESAELSVRIDQENLPSVQVQHLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRE
        VV  GHKRS VYVSEF V+KGS RQ MH+ +  GS R L+  A L  + DQ+NLPS QV+ L S +KG  N     L+  R +T  VR + EL+KSHRR 
Subjt:  VVVIGHKRSSVYVSEFAVSKGSERQRMHRAID-GSGRDLKESAELSVRIDQENLPSVQVQHLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRE

Query:  SASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLS
        SA        ++  G++SSVAT   G     G  S
Subjt:  SASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLS

XP_022157059.1 uncharacterized protein LOC111023870 [Momordica charantia]1.8e-1038.37Show/hide
Query:  QYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHR-AIDGSGRDLKESAELSVRIDQENLPSVQVQHLE
        +YIP+FRFNLLSVGK                                    E     GS RQ MHR A D SGRDLK    L  R DQ+NLPS  V+ L 
Subjt:  QYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHR-AIDGSGRDLKESAELSVRIDQENLPSVQVQHLE

Query:  SRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRESASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLS
        S  KG  N     L+  + +T  VRR  EL+KSHRR SA         +  G VSSV T+  G     G  S
Subjt:  SRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRESASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLS

TrEMBL top hitse value%identityAlignment
A0A2K3MXK1 Putative gag/pol polyprotein1.7e-0644.29Show/hide
Query:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSK
        ET   + + +   ++IP  RFNLLSVG+ D++GY + F    WKLK+ S VV  G K S++YV +  VSK
Subjt:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSK

A0A4Y1QXT8 gag_pre-integrs domain-containing protein1.1e-0529.59Show/hide
Query:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDLKESAELSVRI
        ET  + H+ +   +++PN   NL+S G  DD+GY++ F  G WKL + S ++  G K +++Y++   VS G        +I+   + L   +E  ++I
Subjt:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDLKESAELSVRI

A0A4Y1QYG0 Uncharacterized protein1.4e-0536.62Show/hide
Query:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKG
        ET  + H+ +   +++P+ R NL+S G  DD+GY++ F  G WKL + S V+  G K +++Y++   VS G
Subjt:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKG

A0A4Y1R5B0 Integrase catalytic domain-containing protein1.4e-0536.62Show/hide
Query:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKG
        ET  + H+ +   +++P+ R NL+S G  DD+GY++ F  G WKL + S V+  G K +++Y++   VS G
Subjt:  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKG

A0A6J1DD48 cinnamoyl-CoA reductase-like SNL63.4e-1546.67Show/hide
Query:  VVVIGHKRSSVYVSEFAVSKGSERQRMHRAID-GSGRDLKESAELSVRIDQENLPSVQVQHLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRE
        VV  GHKRS VYVSEF V+KGS RQ MH+ +  GS R L+  A L  + DQ+NLPS QV+ L S +KG  N     L+  R +T  VR + EL+KSHRR 
Subjt:  VVVIGHKRSSVYVSEFAVSKGSERQRMHRAID-GSGRDLKESAELSVRIDQENLPSVQVQHLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRE

Query:  SASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLS
        SA        ++  G++SSVAT   G     G  S
Subjt:  SASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCTCGTGGCGAAATAAATGACTGCGAAAGCATTGTTGTAGTCTTTGCAAGCCAGGTATGGAAAACTTTATGCCGATACAAAAATATTCTCTGGGTGAAGTATTT
CAACATCCACATGGAGGAGGAAACTTTGATGAATTCCCACATTGGTGTTGCGAGATGTCAATATATTCCTAACTTCAGATTTAATTTGTTATCTGTAGGGAAGCCAGATG
ATGATGGCTACAGCAGTGAGTTTGTTTGGGGTTGCTGGAAGCTCAAGAGGAAATCTGGGGTAGTGGTGATAGGTCACAAGAGATCTTCTGTTTATGTGTCTGAGTTTGCG
GTTTCCAAGGGATCTGAGAGACAGAGAATGCACAGGGCTATAGATGGTTCAGGGCGAGATTTGAAAGAATCAGCAGAATTGTCAGTCAGGATAGATCAGGAGAATCTACC
ATCAGTTCAAGTACAACACTTGGAAAGTAGAAGAAAGGGAAAGGGGAACAACTCAGTGAGGTGTTTAGTAGACTGTCGGGATAATACCCTGGTTGTCAGACGGATGAGCG
AGCTAATGAAGTCGCATAGGCGAGAGAGTGCATCAAGGAGGAAGACTACAATTGGTATTGAAGTTAAGGGTAATGTCTCTAGTGTAGCAACAAACTGGGTGGGAGTGCCA
AGTCATCAGGGGAATCTTTCTTCAGAGGTTGTTGGGTTCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATCTCGTGGCGAAATAAATGACTGCGAAAGCATTGTTGTAGTCTTTGCAAGCCAGGTATGGAAAACTTTATGCCGATACAAAAATATTCTCTGGGTGAAGTATTT
CAACATCCACATGGAGGAGGAAACTTTGATGAATTCCCACATTGGTGTTGCGAGATGTCAATATATTCCTAACTTCAGATTTAATTTGTTATCTGTAGGGAAGCCAGATG
ATGATGGCTACAGCAGTGAGTTTGTTTGGGGTTGCTGGAAGCTCAAGAGGAAATCTGGGGTAGTGGTGATAGGTCACAAGAGATCTTCTGTTTATGTGTCTGAGTTTGCG
GTTTCCAAGGGATCTGAGAGACAGAGAATGCACAGGGCTATAGATGGTTCAGGGCGAGATTTGAAAGAATCAGCAGAATTGTCAGTCAGGATAGATCAGGAGAATCTACC
ATCAGTTCAAGTACAACACTTGGAAAGTAGAAGAAAGGGAAAGGGGAACAACTCAGTGAGGTGTTTAGTAGACTGTCGGGATAATACCCTGGTTGTCAGACGGATGAGCG
AGCTAATGAAGTCGCATAGGCGAGAGAGTGCATCAAGGAGGAAGACTACAATTGGTATTGAAGTTAAGGGTAATGTCTCTAGTGTAGCAACAAACTGGGTGGGAGTGCCA
AGTCATCAGGGGAATCTTTCTTCAGAGGTTGTTGGGTTCGATTGA
Protein sequenceShow/hide protein sequence
MQSRGEINDCESIVVVFASQVWKTLCRYKNILWVKYFNIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFA
VSKGSERQRMHRAIDGSGRDLKESAELSVRIDQENLPSVQVQHLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRESASRRKTTIGIEVKGNVSSVATNWVGVP
SHQGNLSSEVVGFD