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Moc09g27640 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g27640
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:20693999..20694735
RNA-Seq ExpressionMoc09g27640
SyntenyMoc09g27640
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150385.1 uncharacterized protein LOC111018561 [Momordica charantia]1.5e-2283.12Show/hide
Query:  RDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKE
        RD D R  + D+KKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRF+EQVEALK R ++ E
Subjt:  RDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKE

XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]5.7e-2247.09Show/hide
Query:  MRHRLHTMEEMYVEATWV--NRKASPFRVP-----GAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSD
        MR ++ TME+MY E       R  S  RV         G   G V   HP         E  +Y+ +  DLR+HL ++K+ +S     SPS S    NS+
Subjt:  MRHRLHTMEEMYVEATWV--NRKASPFRVP-----GAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSD

Query:  LKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
         +A+S Y P+TPE VITREEFD +K +F+ QVEALKA+CEKKE SFDDGDLGES FTSDILEA      K P
Subjt:  LKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]8.4e-5876.58Show/hide
Query:  MEEMYVEATWVNRKASPFRVPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEA
        ME+MY EAT  NR ASP   PGAPGEK    PS  PGDREP+PN+ G+DYSLRDND+RKHLT+KKKRASREPEDS SYSR+FSNS+LKAQSKYKPL PEA
Subjt:  MEEMYVEATWVNRKASPFRVPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEA

Query:  VITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
        +ITREEFDLMKH+F EQVEALKARCEKKECSFD+GDLGES FT DILEA      K P
Subjt:  VITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]9.9e-5179.14Show/hide
Query:  VPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVE
        +PGAPGEK    PS  PG+REP+PN+EGVDYSLRDNDLRKHLTDKKK+AS EPEDS SYSREFSNS+LKAQSKYKPL PEAVI REEFDLMKHRF+EQVE
Subjt:  VPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVE

Query:  ALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
        ALKARCEKKE  FDD DLGES FTSDI+EA      K P
Subjt:  ALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

XP_022157897.1 uncharacterized protein LOC111024503 [Momordica charantia]8.4e-3485.87Show/hide
Query:  RASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
        RASRE EDSPSYSREFSNSD KAQSKYKPLTPEAVITREEFDLMKHRF+EQVEALKA+CEKKECSFDDGDLGES FTSDILE       K P
Subjt:  RASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

TrEMBL top hitse value%identityAlignment
A0A6J1D8C0 uncharacterized protein LOC1110185617.2e-2383.12Show/hide
Query:  RDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKE
        RD D R  + D+KKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRF+EQVEALK R ++ E
Subjt:  RDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKE

A0A6J1DDW5 uncharacterized protein LOC1110196342.7e-2247.09Show/hide
Query:  MRHRLHTMEEMYVEATWV--NRKASPFRVP-----GAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSD
        MR ++ TME+MY E       R  S  RV         G   G V   HP         E  +Y+ +  DLR+HL ++K+ +S     SPS S    NS+
Subjt:  MRHRLHTMEEMYVEATWV--NRKASPFRVP-----GAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSD

Query:  LKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
         +A+S Y P+TPE VITREEFD +K +F+ QVEALKA+CEKKE SFDDGDLGES FTSDILEA      K P
Subjt:  LKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

A0A6J1DNM4 Ribonuclease H4.1e-5876.58Show/hide
Query:  MEEMYVEATWVNRKASPFRVPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEA
        ME+MY EAT  NR ASP   PGAPGEK    PS  PGDREP+PN+ G+DYSLRDND+RKHLT+KKKRASREPEDS SYSR+FSNS+LKAQSKYKPL PEA
Subjt:  MEEMYVEATWVNRKASPFRVPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEA

Query:  VITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
        +ITREEFDLMKH+F EQVEALKARCEKKECSFD+GDLGES FT DILEA      K P
Subjt:  VITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

A0A6J1DPC9 uncharacterized protein LOC1110222804.8e-5179.14Show/hide
Query:  VPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVE
        +PGAPGEK    PS  PG+REP+PN+EGVDYSLRDNDLRKHLTDKKK+AS EPEDS SYSREFSNS+LKAQSKYKPL PEAVI REEFDLMKHRF+EQVE
Subjt:  VPGAPGEKEGDVPSFHPGDREPVPNNEGVDYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVE

Query:  ALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
        ALKARCEKKE  FDD DLGES FTSDI+EA      K P
Subjt:  ALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

A0A6J1DVR0 uncharacterized protein LOC1110245034.1e-3485.87Show/hide
Query:  RASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
        RASRE EDSPSYSREFSNSD KAQSKYKPLTPEAVITREEFDLMKHRF+EQVEALKA+CEKKECSFDDGDLGES FTSDILE       K P
Subjt:  RASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTCAGCGAGACCTTGATGCAAGAATGGTCGAGGACTAGGTCCGAACGGGACAAGAGGGAGATCTGCCGTGCAGATCTGCCCGCCACGCGAACCAAGAGTTACCC
CCTGCTCACCCGAAACCCTCAAAGGCCAACCGAGGCCGAGCGCGAGTTGGATGATATGCGCCATCGGTTGCACACAATGGAAGAAATGTACGTCGAGGCGACGTGGGTTA
ACCGAAAAGCGTCTCCCTTCAGGGTCCCAGGCGCACCCGGAGAGAAGGAAGGCGATGTTCCATCTTTCCACCCTGGCGACCGCGAGCCCGTTCCCAACAATGAGGGGGTG
GATTACAGCTTGCGAGATAACGATCTAAGAAAGCACCTCACTGATAAGAAGAAGAGAGCATCTCGGGAGCCGGAAGACTCTCCGTCCTACTCCCGAGAGTTCTCCAATTC
TGACCTCAAGGCTCAATCAAAATATAAGCCTCTAACACCAGAAGCTGTGATCACCAGGGAAGAGTTCGATCTGATGAAGCATAGGTTCAACGAGCAGGTCGAGGCGCTCA
AGGCCAGGTGCGAGAAGAAAGAGTGCTCGTTTGACGATGGCGACTTGGGAGAATCGTCATTCACCTCGGACATCCTGGAGGCCCAATTCCTCCAAAGTTCAAAACACCCG
CCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACTCAGCGAGACCTTGATGCAAGAATGGTCGAGGACTAGGTCCGAACGGGACAAGAGGGAGATCTGCCGTGCAGATCTGCCCGCCACGCGAACCAAGAGTTACCC
CCTGCTCACCCGAAACCCTCAAAGGCCAACCGAGGCCGAGCGCGAGTTGGATGATATGCGCCATCGGTTGCACACAATGGAAGAAATGTACGTCGAGGCGACGTGGGTTA
ACCGAAAAGCGTCTCCCTTCAGGGTCCCAGGCGCACCCGGAGAGAAGGAAGGCGATGTTCCATCTTTCCACCCTGGCGACCGCGAGCCCGTTCCCAACAATGAGGGGGTG
GATTACAGCTTGCGAGATAACGATCTAAGAAAGCACCTCACTGATAAGAAGAAGAGAGCATCTCGGGAGCCGGAAGACTCTCCGTCCTACTCCCGAGAGTTCTCCAATTC
TGACCTCAAGGCTCAATCAAAATATAAGCCTCTAACACCAGAAGCTGTGATCACCAGGGAAGAGTTCGATCTGATGAAGCATAGGTTCAACGAGCAGGTCGAGGCGCTCA
AGGCCAGGTGCGAGAAGAAAGAGTGCTCGTTTGACGATGGCGACTTGGGAGAATCGTCATTCACCTCGGACATCCTGGAGGCCCAATTCCTCCAAAGTTCAAAACACCCG
CCATGA
Protein sequenceShow/hide protein sequence
MALSETLMQEWSRTRSERDKREICRADLPATRTKSYPLLTRNPQRPTEAERELDDMRHRLHTMEEMYVEATWVNRKASPFRVPGAPGEKEGDVPSFHPGDREPVPNNEGV
DYSLRDNDLRKHLTDKKKRASREPEDSPSYSREFSNSDLKAQSKYKPLTPEAVITREEFDLMKHRFNEQVEALKARCEKKECSFDDGDLGESSFTSDILEAQFLQSSKHP
P