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Moc09g27870 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g27870
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:20866568..20868841
RNA-Seq ExpressionMoc09g27870
SyntenyMoc09g27870
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150760.1 uncharacterized protein LOC111018823 [Momordica charantia]2.6e-1865.12Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQLASAYETDLTRSVPVEILDN
        +G VRGEQ ASRECYASALKGSSVCALETL SRD TLEFK +LP+REFAAPTEELELVPLL  +      +E +L     +  +D+
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQLASAYETDLTRSVPVEILDN

XP_022152110.1 uncharacterized protein LOC111019899 [Momordica charantia]3.7e-2083.58Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL
        +GTVRGEQTASRECYAS LKG+SVCALETL SRD TLEF+ DLP REFAAP EELELVPLLS EKQ+
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL

XP_022155866.1 uncharacterized protein LOC111022880 [Momordica charantia]4.1e-1982.09Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL
        +GTVRGEQ ASRECYA+ALKG SVCALETL  RD TLEF+ +LP++EFAAPTEELELVPLLSPEKQL
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL

XP_022157676.1 uncharacterized protein LOC111024332 [Momordica charantia]3.1e-1983.33Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ
        +GTVRGEQT SRECYA+ALKGSSVCALETL  RD TLE + DLP++EFAAPTEELELVPLLSPEKQ
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ

XP_022158219.1 protein NYNRIN-like [Momordica charantia]9.7e-3758.33Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ----------------------------------
        +GTVRGEQTASRECYASALKGSSVCALE   S +ETLEFK DLP+REF+APTEELELVPLLS EKQ                                  
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ----------------------------------

Query:  ------------------------LASAYETDLTRSVPVEILDNPSISEPDLMEIGAPKSSWMDPIAD
                                LASAYETDL RSVPVEILDNPSISEPDLMEIGAP+SSWMDPIAD
Subjt:  ------------------------LASAYETDLTRSVPVEILDNPSISEPDLMEIGAPKSSWMDPIAD

TrEMBL top hitse value%identityAlignment
A0A6J1D9E1 uncharacterized protein LOC1110188231.3e-1865.12Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQLASAYETDLTRSVPVEILDN
        +G VRGEQ ASRECYASALKGSSVCALETL SRD TLEFK +LP+REFAAPTEELELVPLL  +      +E +L     +  +D+
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQLASAYETDLTRSVPVEILDN

A0A6J1DD03 uncharacterized protein LOC1110198991.8e-2083.58Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL
        +GTVRGEQTASRECYAS LKG+SVCALETL SRD TLEF+ DLP REFAAP EELELVPLLS EKQ+
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL

A0A6J1DT04 uncharacterized protein LOC1110228802.0e-1982.09Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL
        +GTVRGEQ ASRECYA+ALKG SVCALETL  RD TLEF+ +LP++EFAAPTEELELVPLLSPEKQL
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQL

A0A6J1DYS0 Ribonuclease H4.7e-3758.33Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ----------------------------------
        +GTVRGEQTASRECYASALKGSSVCALE   S +ETLEFK DLP+REF+APTEELELVPLLS EKQ                                  
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ----------------------------------

Query:  ------------------------LASAYETDLTRSVPVEILDNPSISEPDLMEIGAPKSSWMDPIAD
                                LASAYETDL RSVPVEILDNPSISEPDLMEIGAP+SSWMDPIAD
Subjt:  ------------------------LASAYETDLTRSVPVEILDNPSISEPDLMEIGAPKSSWMDPIAD

A0A6J1DYW5 uncharacterized protein LOC1110243321.5e-1983.33Show/hide
Query:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ
        +GTVRGEQT SRECYA+ALKGSSVCALETL  RD TLE + DLP++EFAAPTEELELVPLLSPEKQ
Subjt:  MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCACGGTCCGAGGAGAACAGACCGCTTCAAGGGAGTGCTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTTGAAACTCTCCCCAGTAGGGATGAGACGCT
CGAGTTCAAGGTCGACCTGCCGAAGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAATTAGCATCGGCGTACGAGACCG
ACCTGACCAGGTCGGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAAAGTCCTCATGGATGGACCCGATTGCGGAC
TCATTAGGGGCAACTCACCACAAGACCCTAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCTGC
CTCTATTGAGATGTCTAACCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCACGGTCCGAGGAGAACAGACCGCTTCAAGGGAGTGCTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTTGAAACTCTCCCCAGTAGGGATGAGACGCT
CGAGTTCAAGGTCGACCTGCCGAAGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAATTAGCATCGGCGTACGAGACCG
ACCTGACCAGGTCGGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAAAGTCCTCATGGATGGACCCGATTGCGGAC
TCATTAGGGGCAACTCACCACAAGACCCTAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCTGC
CTCTATTGAGATGTCTAACCCCTGA
Protein sequenceShow/hide protein sequence
MGTVRGEQTASRECYASALKGSSVCALETLPSRDETLEFKVDLPKREFAAPTEELELVPLLSPEKQLASAYETDLTRSVPVEILDNPSISEPDLMEIGAPKSSWMDPIAD
SLGATHHKTLRSAESWQGEQLGSWSEVEHCTDAAFPASIEMSNP