; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g28200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g28200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr9:21228617..21233747
RNA-Seq ExpressionMoc09g28200
SyntenyMoc09g28200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036947.1 uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]4.7e-2434.33Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGE----VHEISYGQKPLIGN-------------------LKPIHYPTTSNKP
        MIGNASTNFSDII IGERIEYG+K+GR+   TT     KK  I KKKEGE    VH +S   KP+  N                     PI    T   P
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGE----VHEISYGQKPLIGN-------------------LKPIHYPTTSNKP

Query:  RSSYNRPLDA-------------RDSNVPV-ASKRAIGHSIENWYSLKGKVQDLMRAGWLKFQKA-------------------------------EEDN
        +   NR + +              DSN         +GHS EN  +LK  VQ L+ AGWL F+K+                               E   
Subjt:  RSSYNRPLDA-------------RDSNVPV-ASKRAIGHSIENWYSLKGKVQDLMRAGWLKFQKA-------------------------------EEDN

Query:  KVVPWNYGCHTLDK-----EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE
         V+P      +L +       P+V NI+GISG+TRSGRCY P+    +     + + +E+G+  E+ ++KE+  D+    PII K    KK+V+DEE  E
Subjt:  KVVPWNYGCHTLDK-----EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE

KAA0041718.1 uncharacterized protein E6C27_scaffold67G00540 [Cucumis melo var. makuwa]7.3e-1730.63Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---
        MIGNASTNFSDII  GERIEYG+K+GR++  TT     KK  I KKKEGEVH I +   P  G  K I   T S  P+   S+  RP     + +P+   
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---

Query:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT
                                       A+   +E   +        ++   + L  A ++  +  +                +D K VPW Y    
Subjt:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT

Query:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE
        +    P V N++GISG+TRSGRCY P     +       + +E+ +  E+ ++KE+  D+     II K    KK+V+D+E  E
Subjt:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE

TYK04059.1 uncharacterized protein E5676_scaffold3019G00010 [Cucumis melo var. makuwa]9.8e-2232.01Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEIS----------YGQK-------PLIGNLKPIHY-------------
        MIGNASTNFSDII IGERIEYG+K+GR+   TT     KK  I KKKEGEVH I           +GQ+         I N+  I Y             
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEIS----------YGQK-------PLIGNLKPIHY-------------

Query:  -PTTSNKPR---------------------SSYNRPLDARDSN--------VPVA---------------SKRAIGHSIENWYSLKGKVQDLMRAGWLKF
         P  SN PR                      +Y   L     N        +P+                    +G+S EN  +LK KVQ L+ AGWL F
Subjt:  -PTTSNKPR---------------------SSYNRPLDARDSN--------VPVA---------------SKRAIGHSIENWYSLKGKVQDLMRAGWLKF

Query:  QKAEE----------DNKVVPWNYGCHTLDK----------------EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKEN
        +K+ E          D++ +  N     ++K                E P V NI+GIS +TRSGRCY P+    +       + +E+G+  E+ ++KE+
Subjt:  QKAEE----------DNKVVPWNYGCHTLDK----------------EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKEN

Query:  WADE----PIIVKGSSSKKIVSDEEVFE
          D+    PII K    KK+ +DEE  E
Subjt:  WADE----PIIVKGSSSKKIVSDEEVFE

TYK20949.1 uncharacterized protein E5676_scaffold284G00970 [Cucumis melo var. makuwa]7.3e-1730.63Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---
        MIGNASTNFSDII  GERIEYG+K+GR++  TT     KK  I KKKEGEVH I +   P  G  K I   T S  P+   S+  RP     + +P+   
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---

Query:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT
                                       A+   +E   +        ++   + L  A ++  +  +                +D K VPW Y    
Subjt:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT

Query:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE
        +    P V N++GISG+TRSGRCY P     +       + +E+ +  E+ ++KE+  D+     II K    KK+V+D+E  E
Subjt:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]2.1e-4838.73Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMHTTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPRSSYNRPLDAR----DSN------
        MIGNAST+FSDIITI ERIEYGVKYGRIM TTS++S KK+FIPKKKEGEVHEI YG+KPL GNLK IHYP    KP  SY++PLDAR    DSN      
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMHTTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPRSSYNRPLDAR----DSN------

Query:  -----------VPVASKRAIGHSIENWY------------------------------------------------------------------SLKGK-
                   +P+     +   I NW                                                                   S +GK 
Subjt:  -----------VPVASKRAIGHSIENWY------------------------------------------------------------------SLKGK-

Query:  -----VQDL------------------MRAGWLKFQKAEE--------------------------------------------DNKVVPWNYGCHTLDK
              Q L                  + A ++     EE                                            DNK VPW+YGCHTLD+
Subjt:  -----VQDL------------------MRAGWLKFQKAEE--------------------------------------------DNKVVPWNYGCHTLDK

Query:  EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADEPIIVKGSSSKKIVSDEEVFE
        E  IVTNIS +SGMTRSG CY  E  KASQ+DEQHKI   KGK K+  DL+E W +EP++ KGSS KKIVSDEE  E
Subjt:  EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADEPIIVKGSSSKKIVSDEEVFE

TrEMBL top hitse value%identityAlignment
A0A5A7T5W2 Retrotrans_gag domain-containing protein2.3e-2434.33Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGE----VHEISYGQKPLIGN-------------------LKPIHYPTTSNKP
        MIGNASTNFSDII IGERIEYG+K+GR+   TT     KK  I KKKEGE    VH +S   KP+  N                     PI    T   P
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGE----VHEISYGQKPLIGN-------------------LKPIHYPTTSNKP

Query:  RSSYNRPLDA-------------RDSNVPV-ASKRAIGHSIENWYSLKGKVQDLMRAGWLKFQKA-------------------------------EEDN
        +   NR + +              DSN         +GHS EN  +LK  VQ L+ AGWL F+K+                               E   
Subjt:  RSSYNRPLDA-------------RDSNVPV-ASKRAIGHSIENWYSLKGKVQDLMRAGWLKFQKA-------------------------------EEDN

Query:  KVVPWNYGCHTLDK-----EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE
         V+P      +L +       P+V NI+GISG+TRSGRCY P+    +     + + +E+G+  E+ ++KE+  D+    PII K    KK+V+DEE  E
Subjt:  KVVPWNYGCHTLDK-----EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE

A0A5A7TFM3 RNase H domain-containing protein3.5e-1730.63Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---
        MIGNASTNFSDII  GERIEYG+K+GR++  TT     KK  I KKKEGEVH I +   P  G  K I   T S  P+   S+  RP     + +P+   
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---

Query:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT
                                       A+   +E   +        ++   + L  A ++  +  +                +D K VPW Y    
Subjt:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT

Query:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE
        +    P V N++GISG+TRSGRCY P     +       + +E+ +  E+ ++KE+  D+     II K    KK+V+D+E  E
Subjt:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE

A0A5D3C117 Uncharacterized protein4.7e-2232.01Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEIS----------YGQK-------PLIGNLKPIHY-------------
        MIGNASTNFSDII IGERIEYG+K+GR+   TT     KK  I KKKEGEVH I           +GQ+         I N+  I Y             
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEIS----------YGQK-------PLIGNLKPIHY-------------

Query:  -PTTSNKPR---------------------SSYNRPLDARDSN--------VPVA---------------SKRAIGHSIENWYSLKGKVQDLMRAGWLKF
         P  SN PR                      +Y   L     N        +P+                    +G+S EN  +LK KVQ L+ AGWL F
Subjt:  -PTTSNKPR---------------------SSYNRPLDARDSN--------VPVA---------------SKRAIGHSIENWYSLKGKVQDLMRAGWLKF

Query:  QKAEE----------DNKVVPWNYGCHTLDK----------------EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKEN
        +K+ E          D++ +  N     ++K                E P V NI+GIS +TRSGRCY P+    +       + +E+G+  E+ ++KE+
Subjt:  QKAEE----------DNKVVPWNYGCHTLDK----------------EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKEN

Query:  WADE----PIIVKGSSSKKIVSDEEVFE
          D+    PII K    KK+ +DEE  E
Subjt:  WADE----PIIVKGSSSKKIVSDEEVFE

A0A5D3DCC9 Uncharacterized protein3.5e-1730.63Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---
        MIGNASTNFSDII  GERIEYG+K+GR++  TT     KK  I KKKEGEVH I +   P  G  K I   T S  P+   S+  RP     + +P+   
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMH-TTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPR---SSYNRPLDARDSNVPV---

Query:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT
                                       A+   +E   +        ++   + L  A ++  +  +                +D K VPW Y    
Subjt:  ---------------------------ASKRAIGHSIENWYS--------LKGKVQDLMRAGWLKFQKAE----------------EDNKVVPWNYGCHT

Query:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE
        +    P V N++GISG+TRSGRCY P     +       + +E+ +  E+ ++KE+  D+     II K    KK+V+D+E  E
Subjt:  LDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADE----PIIVKGSSSKKIVSDEEVFE

A0A6J1DV70 uncharacterized protein LOC1110243601.0e-4838.73Show/hide
Query:  MIGNASTNFSDIITIGERIEYGVKYGRIMHTTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPRSSYNRPLDAR----DSN------
        MIGNAST+FSDIITI ERIEYGVKYGRIM TTS++S KK+FIPKKKEGEVHEI YG+KPL GNLK IHYP    KP  SY++PLDAR    DSN      
Subjt:  MIGNASTNFSDIITIGERIEYGVKYGRIMHTTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPRSSYNRPLDAR----DSN------

Query:  -----------VPVASKRAIGHSIENWY------------------------------------------------------------------SLKGK-
                   +P+     +   I NW                                                                   S +GK 
Subjt:  -----------VPVASKRAIGHSIENWY------------------------------------------------------------------SLKGK-

Query:  -----VQDL------------------MRAGWLKFQKAEE--------------------------------------------DNKVVPWNYGCHTLDK
              Q L                  + A ++     EE                                            DNK VPW+YGCHTLD+
Subjt:  -----VQDL------------------MRAGWLKFQKAEE--------------------------------------------DNKVVPWNYGCHTLDK

Query:  EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADEPIIVKGSSSKKIVSDEEVFE
        E  IVTNIS +SGMTRSG CY  E  KASQ+DEQHKI   KGK K+  DL+E W +EP++ KGSS KKIVSDEE  E
Subjt:  EAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADEPIIVKGSSSKKIVSDEEVFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGAAATGCTTCCACAAATTTCTCAGATATCATTACTATTGGAGAAAGAATTGAATATGGAGTGAAATATGGAAGGATCATGCATACAACATCAAATTCAAGTAA
CAAAAAGAGTTTTATTCCAAAAAAGAAAGAAGGAGAAGTCCACGAGATTAGTTATGGTCAGAAACCACTTATTGGAAATCTGAAGCCTATACATTACCCGACGACCAGCA
ACAAACCTCGAAGTTCTTACAATAGGCCATTAGATGCTCGTGATTCGAACGTGCCTGTTGCTTCAAAAAGGGCAATTGGGCATTCAATAGAAAATTGGTATTCACTCAAG
GGGAAGGTGCAGGATTTGATGAGGGCAGGATGGCTTAAATTTCAAAAGGCAGAAGAGGATAATAAAGTAGTACCATGGAATTATGGTTGTCATACTCTCGATAAGGAAGC
ACCCATTGTGACTAACATTTCTGGAATTAGTGGAATGACTAGAAGCGGAAGATGCTACGACCCTGAAGCCTCAAAAGCATCACAAATTGATGAGCAGCACAAAATTCAGA
TTGAAAAAGGAAAAGTGAAGGAGCGCCTTGATCTAAAGGAAAATTGGGCTGATGAGCCTATTATAGTTAAAGGAAGTTCATCTAAGAAAATAGTATCTGATGAAGAAGTT
TTTGAAGTTGATCCAAATAGAATATGCTTTTCTATTAGTGGGGGTCTTTCTCTACTGTTGTTGATATCCGCTTTTAGATATGCTTCTGCTTTTACTGATGCTTATGGATT
ACTTGTTGGATCAAATCTAAAAACGTCTCAATTTGATCGGCCTGACCATTCAGCAGAGAAATTGAAGTATACGTGTAACGCCCTGCGTTACTCAGTCGTCAGCCTCCCTG
ACAGTACCCGACGACACACTCTAGTGGACGACGGTGCAACAGGCATCTCGGCGGCAACGGAGTTCCGCTCCATTTCGCGGTGTTTCGAGGTGGGCGCGGCGGTCTGTGGT
GTTGAGCGACGTCTCGAGGGTTTGGTGGCGGCCAATGATCCATCTCAACTCAGTATGGGAGACCCCCACACCCTTGTGGCAATGATTAGGGCTGTAAGGACGTTTTCGGT
AAGGATTGGAGTTACAACCATGGTGGTGATGTGGGGAAGACTCGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGAAATGCTTCCACAAATTTCTCAGATATCATTACTATTGGAGAAAGAATTGAATATGGAGTGAAATATGGAAGGATCATGCATACAACATCAAATTCAAGTAA
CAAAAAGAGTTTTATTCCAAAAAAGAAAGAAGGAGAAGTCCACGAGATTAGTTATGGTCAGAAACCACTTATTGGAAATCTGAAGCCTATACATTACCCGACGACCAGCA
ACAAACCTCGAAGTTCTTACAATAGGCCATTAGATGCTCGTGATTCGAACGTGCCTGTTGCTTCAAAAAGGGCAATTGGGCATTCAATAGAAAATTGGTATTCACTCAAG
GGGAAGGTGCAGGATTTGATGAGGGCAGGATGGCTTAAATTTCAAAAGGCAGAAGAGGATAATAAAGTAGTACCATGGAATTATGGTTGTCATACTCTCGATAAGGAAGC
ACCCATTGTGACTAACATTTCTGGAATTAGTGGAATGACTAGAAGCGGAAGATGCTACGACCCTGAAGCCTCAAAAGCATCACAAATTGATGAGCAGCACAAAATTCAGA
TTGAAAAAGGAAAAGTGAAGGAGCGCCTTGATCTAAAGGAAAATTGGGCTGATGAGCCTATTATAGTTAAAGGAAGTTCATCTAAGAAAATAGTATCTGATGAAGAAGTT
TTTGAAGTTGATCCAAATAGAATATGCTTTTCTATTAGTGGGGGTCTTTCTCTACTGTTGTTGATATCCGCTTTTAGATATGCTTCTGCTTTTACTGATGCTTATGGATT
ACTTGTTGGATCAAATCTAAAAACGTCTCAATTTGATCGGCCTGACCATTCAGCAGAGAAATTGAAGTATACGTGTAACGCCCTGCGTTACTCAGTCGTCAGCCTCCCTG
ACAGTACCCGACGACACACTCTAGTGGACGACGGTGCAACAGGCATCTCGGCGGCAACGGAGTTCCGCTCCATTTCGCGGTGTTTCGAGGTGGGCGCGGCGGTCTGTGGT
GTTGAGCGACGTCTCGAGGGTTTGGTGGCGGCCAATGATCCATCTCAACTCAGTATGGGAGACCCCCACACCCTTGTGGCAATGATTAGGGCTGTAAGGACGTTTTCGGT
AAGGATTGGAGTTACAACCATGGTGGTGATGTGGGGAAGACTCGACTGA
Protein sequenceShow/hide protein sequence
MIGNASTNFSDIITIGERIEYGVKYGRIMHTTSNSSNKKSFIPKKKEGEVHEISYGQKPLIGNLKPIHYPTTSNKPRSSYNRPLDARDSNVPVASKRAIGHSIENWYSLK
GKVQDLMRAGWLKFQKAEEDNKVVPWNYGCHTLDKEAPIVTNISGISGMTRSGRCYDPEASKASQIDEQHKIQIEKGKVKERLDLKENWADEPIIVKGSSSKKIVSDEEV
FEVDPNRICFSISGGLSLLLLISAFRYASAFTDAYGLLVGSNLKTSQFDRPDHSAEKLKYTCNALRYSVVSLPDSTRRHTLVDDGATGISAATEFRSISRCFEVGAAVCG
VERRLEGLVAANDPSQLSMGDPHTLVAMIRAVRTFSVRIGVTTMVVMWGRLD