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Moc09g28340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g28340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein isoform X1
Genome locationchr9:21306012..21308544
RNA-Seq ExpressionMoc09g28340
SyntenyMoc09g28340
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.9e-33100Show/hide
Query:  ARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG
        ARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG
Subjt:  ARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]2.8e-0544.16Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAK
        +E     ARTNL ENE +QVAR +GGL  DI+E++++Q   +L+EAI+ A T+EE  A + K   +RR+  +T+  K
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAK

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]2.8e-0544.16Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAK
        +E     ARTNL ENE +QVAR +GGL  DI+E++++Q   +L+EAI+ A T+EE  A + K   +RR+  +T+  K
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAK

XP_031745468.1 uncharacterized protein LOC116405837 [Cucumis sativus]2.8e-0544.16Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAK
        +E     ARTNL ENE +QVAR +GGL  DI+E++++Q   +L+EAI+ A T+EE  A + K   +RR+  +T+  K
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAK

XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]4.3e-0643.75Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVA
        +E     ARTNL ENE +Q+AR +GGL  DI+E++++Q + +L+EAI+ A T+EE  A K K   +RR T + +  KK +
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVA

TrEMBL top hitse value%identityAlignment
A0A5A7T256 Reverse transcriptase8.8e-0540.24Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG
        +E     AR NL ENE +Q+AR IGGL  DI+E++++     L+EAI+ A T+EE    + K   +RR   +T+ +KK + G
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG

A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X42.3e-0540.74Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVAT
        +E      RTNL ENEH+Q+AR IGGL  DI+E++++Q   +L+EAI+ A T++E  A   ++++      D   AKK+ T
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVAT

A0A5D3C3X9 Reverse transcriptase3.0e-0550Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYK
        +E  + GAR NL ENE +Q+AR IGGL  DI+E+I++Q   +L+EAI+ A T+EE  A + K
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYK

A0A5D3E417 Transposon Ty3-I Gag-Pol polyprotein isoform X11.8e-0541.46Show/hide
Query:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG
        +E    GAR NL ENE +Q+AR IGGL  DI+E++++     L+EAI+ A T+EE    + K   +RR   +T+ +KK + G
Subjt:  QEQQNPGARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG

A0A6J1DLQ6 uncharacterized protein LOC1110223209.0e-34100Show/hide
Query:  ARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG
        ARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG
Subjt:  ARTNLGENEHYQVARCIGGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGAGCGGTGCGAACGTGCAAGCTACACCGCTTGGGATACTCTCATCATGCATCTGCGATCATTCGGAGATGGAGCTGCGTGGACACGTGTGTTGCATTGCTTG
TATTTGTGAGACTCATTCGCCTCAACTGCAAGCCGAATGCAGTAGGTGGAGGCGTCAACCCATACATCATCGGCGGGAGTATCAGGCAGATTCGTCCAGTCATGAAGATG
ACATTAAGGAATGGGACGGCAGGGGCCGATTCCCATGTCAAGAACAACAAAACCCAGGTGCTCGAACAAACCTTGGAGAGAATGAACACTATCAAGTGGCTCGATGCATT
GGGGGCCTTTGTAATGACATCGAGGAAAGGATTCAGGTCCAGCTTATAGGGTATCTCAATGAGGCTATTGCCACTGCTGTCACCATTGAGGAACAACAGGCTAATAAATA
TAAATTCCAGTATCACAGGAGAGCTACTGGGGATACTTCTTTAGCCAAAAAAGTTGCTACCGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGAGCGGTGCGAACGTGCAAGCTACACCGCTTGGGATACTCTCATCATGCATCTGCGATCATTCGGAGATGGAGCTGCGTGGACACGTGTGTTGCATTGCTTG
TATTTGTGAGACTCATTCGCCTCAACTGCAAGCCGAATGCAGTAGGTGGAGGCGTCAACCCATACATCATCGGCGGGAGTATCAGGCAGATTCGTCCAGTCATGAAGATG
ACATTAAGGAATGGGACGGCAGGGGCCGATTCCCATGTCAAGAACAACAAAACCCAGGTGCTCGAACAAACCTTGGAGAGAATGAACACTATCAAGTGGCTCGATGCATT
GGGGGCCTTTGTAATGACATCGAGGAAAGGATTCAGGTCCAGCTTATAGGGTATCTCAATGAGGCTATTGCCACTGCTGTCACCATTGAGGAACAACAGGCTAATAAATA
TAAATTCCAGTATCACAGGAGAGCTACTGGGGATACTTCTTTAGCCAAAAAAGTTGCTACCGGCTAA
Protein sequenceShow/hide protein sequence
MKGSGANVQATPLGILSSCICDHSEMELRGHVCCIACICETHSPQLQAECSRWRRQPIHHRREYQADSSSHEDDIKEWDGRGRFPCQEQQNPGARTNLGENEHYQVARCI
GGLCNDIEERIQVQLIGYLNEAIATAVTIEEQQANKYKFQYHRRATGDTSLAKKVATG