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Moc09g28600 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g28600
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:21456788..21459458
RNA-Seq ExpressionMoc09g28600
SyntenyMoc09g28600
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131653.1 uncharacterized protein LOC111004780 [Momordica charantia]3.2e-2641.56Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A S++  DI+I IQIGPCTFDITFQVMDITSAYSFLLGR WIHS G+                   IS++E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFEC-------------------RTVKKQNVWQD-----------------------LRTTS---------------NYPRRTICPPLHHS
                 SFE                     T K +N   D                       +R  S               +YPRR I P L+HS
Subjt:  ---------SFEC-------------------RTVKKQNVWQD-----------------------LRTTS---------------NYPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFV
        FRS GIIHQEYDE+SAV  VTEEREQ GPFV
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFV

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]7.4e-3140.3Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A S++ GDI+IPIQIGPCTFDITFQVMDITS YSFLLGR+WIHSAG+                   IS  E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS
                 SFE                       K  N   D  LR   N                                    YPRRT+ PPL HS
Subjt:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI
        FRS G IHQEYD +S V  VTEEREQ  PFV+ C  GFELS  ++   I  D D+   +  PI
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]5.1e-3242.04Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAG--------------------------------SGISQIE--
        MRPST+IVRAFD A S++ GDI+IPIQIGPCTFDITFQVMDITSAYSFLLGR WIHSAG                                + +S +E  
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAG--------------------------------SGISQIE--

Query:  ----EISFECRTV----------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS
            E SF+   +                      K  N   D  LR   N                                    YPRR I PPL HS
Subjt:  ----EISFECRTV----------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI
        FRS G IHQEYDE+S V  VTEEREQ GPFV+LC  GFELS  ++
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]1.3e-2738.78Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A +++ GDI+IPIQIG CTFDITFQVMDITSAYSFLLGR WIHSAG+                   IS  E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFE---------------------------------CRTVK---------KQNVWQDLRTTS---------------NYPRRTICPPLHHS
                 SFE                                  R  K         K N    +R  S               +Y RRT+ PPL HS
Subjt:  ---------SFE---------------------------------CRTVK---------KQNVWQDLRTTS---------------NYPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI
         RS G IHQEYDE+S    VTEEREQ  PFV+ C  GF+LS  ++   I  D D+   +  PI
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]2.4e-2942.04Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A S+  GDI+IPIQIGPCTFD TFQVMDITSAYSFLLGR  IHSAG+                   IS  E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS
                 SFE                       K  N   D  LR   N                                    YPRR I PPL HS
Subjt:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI
        FRS G IHQEYDE+S V  VTEEREQ GPFV+LC  GFELS  ++
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI

TrEMBL top hitse value%identityAlignment
A0A6J1BU14 uncharacterized protein LOC1110047801.6e-2641.56Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A S++  DI+I IQIGPCTFDITFQVMDITSAYSFLLGR WIHS G+                   IS++E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFEC-------------------RTVKKQNVWQD-----------------------LRTTS---------------NYPRRTICPPLHHS
                 SFE                     T K +N   D                       +R  S               +YPRR I P L+HS
Subjt:  ---------SFEC-------------------RTVKKQNVWQD-----------------------LRTTS---------------NYPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFV
        FRS GIIHQEYDE+SAV  VTEEREQ GPFV
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFV

A0A6J1CNY7 Ribonuclease H3.6e-3140.3Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A S++ GDI+IPIQIGPCTFDITFQVMDITS YSFLLGR+WIHSAG+                   IS  E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS
                 SFE                       K  N   D  LR   N                                    YPRRT+ PPL HS
Subjt:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI
        FRS G IHQEYD +S V  VTEEREQ  PFV+ C  GFELS  ++   I  D D+   +  PI
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI

A0A6J1D099 Ribonuclease H2.5e-3242.04Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAG--------------------------------SGISQIE--
        MRPST+IVRAFD A S++ GDI+IPIQIGPCTFDITFQVMDITSAYSFLLGR WIHSAG                                + +S +E  
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAG--------------------------------SGISQIE--

Query:  ----EISFECRTV----------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS
            E SF+   +                      K  N   D  LR   N                                    YPRR I PPL HS
Subjt:  ----EISFECRTV----------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI
        FRS G IHQEYDE+S V  VTEEREQ GPFV+LC  GFELS  ++
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI

A0A6J1D7C7 Ribonuclease H6.3e-2838.78Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A +++ GDI+IPIQIG CTFDITFQVMDITSAYSFLLGR WIHSAG+                   IS  E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFE---------------------------------CRTVK---------KQNVWQDLRTTS---------------NYPRRTICPPLHHS
                 SFE                                  R  K         K N    +R  S               +Y RRT+ PPL HS
Subjt:  ---------SFE---------------------------------CRTVK---------KQNVWQDLRTTS---------------NYPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI
         RS G IHQEYDE+S    VTEEREQ  PFV+ C  GF+LS  ++   I  D D+   +  PI
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPI

A0A6J1DR66 uncharacterized protein LOC1110227911.1e-2942.04Show/hide
Query:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------
        MRPST+IVRAFD A S+  GDI+IPIQIGPCTFD TFQVMDITSAYSFLLGR  IHSAG+                   IS  E+I              
Subjt:  MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSG------------------ISQIEEI--------------

Query:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS
                 SFE                       K  N   D  LR   N                                    YPRR I PPL HS
Subjt:  ---------SFECRTV-------------------KKQNVWQD--LRTTSN------------------------------------YPRRTICPPLHHS

Query:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI
        FRS G IHQEYDE+S V  VTEEREQ GPFV+LC  GFELS  ++
Subjt:  FRSVGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCCAAGTACTATGATAGTGAGAGCATTCGATGAAGCTCACAGCTCTATTTTTGGGGATATTGATATCCCGATCCAAATAGGTCCTTGCACCTTTGACATA
ACATTTCAAGTTATGGACATTACATCAGCTTATAGCTTCTTGCTGGGGCGAATCTGGATACATTCGGCAGGATCAGGTATAAGCCAAATAGAGGAGATATCATTC
GAGTGTAGAACCGTGAAAAAGCAAAATGTCTGGCAAGATTTGAGAACAACAAGCAACTACCCAAGGAGAACTATATGTCCACCTCTTCACCACTCTTTCAGAAGT
GTCGGCATAATCCATCAGGAGTACGATGAGAACTCTGCAGTTACAACTGTGACAGAAGAAAGGGAGCAAACTGGACCTTTTGTCTTCCTGTGCTCATATGGCTTT
GAGCTTAGCAAAGCTGCCATCTTTTATGGTATATTTCACGACTTTGATGCATCCATGACCATGGCTATCCCAATTAGCTTCATGAACTTCAATTTCTTGGACAAT
ATTTTGAGAAATATTGGGAACATGATAAGTGTGATGTTTGAAGAGTTGAGGGTCATGGGATCAGCAGAGAAGTCAAGTTTTGAAGGAATCATGAAGTTCGATGGG
GCCAATTTCGAATATTGGAAGATGCTGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAAGGACCAGTATGGATGAAAGATGAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGCCAAGTACTATGATAGTGAGAGCATTCGATGAAGCTCACAGCTCTATTTTTGGGGATATTGATATCCCGATCCAAATAGGTCCTTGCACCTTTGACATA
ACATTTCAAGTTATGGACATTACATCAGCTTATAGCTTCTTGCTGGGGCGAATCTGGATACATTCGGCAGGATCAGGTATAAGCCAAATAGAGGAGATATCATTC
GAGTGTAGAACCGTGAAAAAGCAAAATGTCTGGCAAGATTTGAGAACAACAAGCAACTACCCAAGGAGAACTATATGTCCACCTCTTCACCACTCTTTCAGAAGT
GTCGGCATAATCCATCAGGAGTACGATGAGAACTCTGCAGTTACAACTGTGACAGAAGAAAGGGAGCAAACTGGACCTTTTGTCTTCCTGTGCTCATATGGCTTT
GAGCTTAGCAAAGCTGCCATCTTTTATGGTATATTTCACGACTTTGATGCATCCATGACCATGGCTATCCCAATTAGCTTCATGAACTTCAATTTCTTGGACAAT
ATTTTGAGAAATATTGGGAACATGATAAGTGTGATGTTTGAAGAGTTGAGGGTCATGGGATCAGCAGAGAAGTCAAGTTTTGAAGGAATCATGAAGTTCGATGGG
GCCAATTTCGAATATTGGAAGATGCTGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAAGGACCAGTATGGATGAAAGATGAAGATTAG
Protein sequenceShow/hide protein sequence
MRPSTMIVRAFDEAHSSIFGDIDIPIQIGPCTFDITFQVMDITSAYSFLLGRIWIHSAGSGISQIEEISFECRTVKKQNVWQDLRTTSNYPRRTICPPLHHSFRS
VGIIHQEYDENSAVTTVTEEREQTGPFVFLCSYGFELSKAAIFYGIFHDFDASMTMAIPISFMNFNFLDNILRNIGNMISVMFEELRVMGSAEKSSFEGIMKFDG
ANFEYWKMLIKDYLTCKKLNKALKEGPVWMKDED