CuGenDBv2

Gene ID	Moc09g28660
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:21494246..21496340
RNA-Seq Expression	Moc09g28660
Synteny	Moc09g28660
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

4.9e-46

50.93

Show/hide

Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+  ++L+L+D VL  V E  T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYG D+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K +++++    SKS+GK + +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEG
         +    S ANV +G
Subjt:  GKREHQSSANVLEG

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.0e-47

49.78

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Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+S ++L+L+D VL  V E  T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK+LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYGRD+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K +++++    SKS+GK + +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G         +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.8e-46

48.89

Show/hide

Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE  +S ++L+L+D VL  V E  T   LW++LE L+L KSLSNKI +KE+FFGY+M+ SK+LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
        +Y+++K AIKYGRD+L +  +LDAL+T+ LEI+ E K+ E L+A+ +S+ KS + K     +    SKS+GK + +CF CHK GHL K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G       + +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

TYK10877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.2e-46

48.44

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Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+S ++L+L+D VL    E+ T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK+LEENL EF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYGRD+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K ++N++     KSR     +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G         +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.5e-47

49.78

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Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+S ++L+L+D VL  V E  T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK+LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYGRD+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K +++++    SKS+GK + +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G         +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

2.4e-46

50.93

Show/hide

Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+  ++L+L+D VL  V E  T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYG D+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K +++++    SKS+GK + +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEG
         +    S ANV +G
Subjt:  GKREHQSSANVLEG

A0A5A7UB25 Putative gag-pol polyprotein

9.7e-48

49.78

Show/hide

Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+S ++L+L+D VL  V E  T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK+LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYGRD+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K +++++    SKS+GK + +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G         +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

A0A5D3CFX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-46

48.44

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Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+S ++L+L+D VL    E+ T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK+LEENL EF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYGRD+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K ++N++     KSR     +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G         +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

A0A5D3CG50 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-46

48.89

Show/hide

Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE  +S ++L+L+D VL  V E  T   LW++LE L+L KSLSNKI +KE+FFGY+M+ SK+LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
        +Y+++K AIKYGRD+L +  +LDAL+T+ LEI+ E K+ E L+A+ +S+ KS + K     +    SKS+GK + +CF CHK GHL K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G       + +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

A0A5D3DNU1 Putative gag-pol polyprotein

7.4e-48

49.78

Show/hide

Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        MDE A+S ++L+L+D VL  V E  T   LW++LE L+L+KSL NKI +KE+FFGY+M+ SK+LEENLDEF KI +DL N GEK+  ENQA+ILLNSLP+
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ
         Y+++K AIKYGRD+LT+  VLDAL+T+ LEI+ E+K+ E L+A+G+S+ KS + K +++++    SKS+GK + +CF CHK GH  K+C   K      
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQ

Query:  GKREHQSSANVLEGKEHDSSNSSFD
         +    S ANV +G         +D
Subjt:  GKREHQSSANVLEGKEHDSSNSSFD

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-27

33.64

Show/hide

Query:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ
        +DE A S + LHL+D+V+  + + +TA+G+W RLE L++SK+L+NK+ LK++ +   M        +L+ FN +   L N G KI  E++AI+LLNSLP 
Subjt:  MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQ

Query:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKS-DFKSHRNKYKKNYQEPQGSKSRGKDKV-ECFNCHKLGHLIKDC-RKLKYKN
         Y ++   I +G+ T+ LK V  AL   E   +  + + +ALI +G+   ++   N Y ++    + SK+R K +V  C+NC++ GH  +DC    K K 
Subjt:  MYKDIKVAIKYGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKS-DFKSHRNKYKKNYQEPQGSKSRGKDKV-ECFNCHKLGHLIKDC-RKLKYKN

Query:  KVQGKREHQSSANVLEGKEH
        +  G++   ++A +++  ++
Subjt:  KVQGKREHQSSANVLEGKEH

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATGAGTCAGCCTTCAGTATTATGATACTACATCTAACAGACAATGTTCTCTGCCAGGTTAGTGAAATCGAAACAGCAAAAGGGCTTTGGGAAAGATTGGAAAAATT
ATTTCTGAGCAAGTCTCTCTCAAATAAAATTCTTTTGAAAGAAAGATTCTTTGGCTATCGTATGGAGTCTTCAAAAACTCTCGAAGAAAATTTAGACGAATTTAATAAAA
TTTGTCTCGATTTAGAAAATGCTGGAGAAAAAATAGGGGGTGAAAATCAAGCAATAATATTGTTAAATTCTCTGCCACAAATGTATAAAGATATTAAAGTAGCAATCAAA
TATGGAAGGGATACCTTAACCCTCAAGACTGTTCTTGATGCTTTGAGAACTAAAGAACTGGAAATCAGAACTGAGAAAAAGGAAAATGAGGCATTAATAGCTAAAGGTAA
ATCAGATTTCAAAAGTCATCGTAACAAATACAAAAAGAACTATCAGGAGCCACAAGGATCAAAATCTAGAGGAAAAGACAAAGTTGAATGCTTCAATTGTCATAAGCTAG
GTCATCTAATTAAAGACTGTCGAAAACTGAAATATAAGAACAAGGTACAAGGTAAAAGAGAGCACCAATCTTCTGCAAATGTTCTTGAGGGAAAAGAGCATGATTCTAGC
AACAGTTCTTTTGATATTGAGCTAGACACTTTTGATAATCATGCTCCAAGTACTGACAAGCAACAACAAGTATCCCAACTATCTGAAGAGCCACACCAATAG

mRNA sequence

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Protein sequence

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MDESAFSIMILHLTDNVLCQVSEIETAKGLWERLEKLFLSKSLSNKILLKERFFGYRMESSKTLEENLDEFNKICLDLENAGEKIGGENQAIILLNSLPQMYKDIKVAIK
YGRDTLTLKTVLDALRTKELEIRTEKKENEALIAKGKSDFKSHRNKYKKNYQEPQGSKSRGKDKVECFNCHKLGHLIKDCRKLKYKNKVQGKREHQSSANVLEGKEHDSS
NSSFDIELDTFDNHAPSTDKQQQVSQLSEEPHQ

Moc09g28660 (gene) of Bitter gourd (OHB3-1) v2 genome