; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g28680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g28680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr9:21502499..21503939
RNA-Seq ExpressionMoc09g28680
SyntenyMoc09g28680
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.9e-3735.15Show/hide
Query:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHLTPTENGWTSTSLKDYVAR
        ++ +D   +P  I ++K +P DRPE SEK  ++K+KGFDLEEL+DQADSPF EEIM EK                              T+ SL DYV R
Subjt:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHLTPTENGWTSTSLKDYVAR

Query:  FNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR------------
        FN+ KLQ+E LTDAVSL+AF+ G++DEHLSFSFGK+T STFSE                                   +PQG     R            
Subjt:  FNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR------------

Query:  --------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSKSPTREIRTILG
                P +  L++                                                       +EYV +PKAT + + D KSP REIRTI+G
Subjt:  --------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSKSPTREIRTILG

Query:  GPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK
        GP+ERESGRKRK                          I+FSEDE THL HPHN+AL+I LKIAN +
Subjt:  GPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK

XP_022150104.1 uncharacterized protein LOC111018365 [Momordica charantia]2.2e-2539.34Show/hide
Query:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL--------------------------RPQGRNGGSRP--------
        T  SL +YVARFNE KLQ+E LTD VSL+AFMSG++DEHLSFSF KKT STFSE                           + + R+G   P        
Subjt:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL--------------------------RPQGRNGGSRP--------

Query:  --------------------------------YD-----TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS---------
                                        +D      GL++    +EYV D KAT + + D KSP REIRTI+GG +ERESGRK K           
Subjt:  --------------------------------YD-----TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS---------

Query:  --------------KIKFSEDEVTHLFHPHNNALIIALKIANAK
                       I+FSEDE TH  HPHN+AL+IALKIAN K
Subjt:  --------------KIKFSEDEVTHLFHPHNNALIIALKIANAK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.6e-4735.94Show/hide
Query:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------
        ++  D   +P  I ++K +P DRPE SEK  S KEKGFDLEEL+DQADSPF EEIM EK+PPKFKLP +KQFD +T+ +DHL                  
Subjt:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------

Query:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF
           + T NG    W                                          T+ SL+DYVARFNE KLQ+E LTDAVSL+AFMSG++DEHLSFSF
Subjt:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF

Query:  GKKTSSTFSEL----------------------------------RPQG---------------------------------------------------
        GK+T +TFSE                                   +PQG                                                   
Subjt:  GKKTSSTFSEL----------------------------------RPQG---------------------------------------------------

Query:  ------------RNGGSRPYD--------TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS-------------------
                    R+ G    D         GL++    +EYV +PKAT + + D KSP REIRTI+GGP+ERESGRKRK                     
Subjt:  ------------RNGGSRPYD--------TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS-------------------

Query:  ----KIKFSEDEVTHLFHPHNNALIIALKIANAK
             I+FSEDE THL HPHN+AL+I LKIAN K
Subjt:  ----KIKFSEDEVTHLFHPHNNALIIALKIANAK

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]6.4e-3345.71Show/hide
Query:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------
        N+  +   +P  I +NK +P DRPE SEK  ++KEKGFDLEEL+ QADSPF EEIM EK+PPKFKLP +K FDG T  +DHL                  
Subjt:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------

Query:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF
           + T NG    W                                          T+ SL DYVARFNE KLQ+E LTDAVSL+AFMSG++DEHLSFSF
Subjt:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF

Query:  GKKTSSTFSE
         K+T STFSE
Subjt:  GKKTSSTFSE

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.3e-2535.61Show/hide
Query:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR-
        T+ SL DYVARFN+ KLQIE LTD VSL+AFMSG++DEHLSFSFGKKT STFSE                                   +PQG     R 
Subjt:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR-

Query:  -------------------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSK
                           P +  L++                                                       QEYV +PKAT + + + K
Subjt:  -------------------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSK

Query:  SPTREIRTILGGPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK
        SP REIRTI+GGP+ERES RKRK                          I+FSEDE THL HPHN+AL+I LKIAN K
Subjt:  SPTREIRTILGGPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128059.3e-3835.15Show/hide
Query:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHLTPTENGWTSTSLKDYVAR
        ++ +D   +P  I ++K +P DRPE SEK  ++K+KGFDLEEL+DQADSPF EEIM EK                              T+ SL DYV R
Subjt:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHLTPTENGWTSTSLKDYVAR

Query:  FNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR------------
        FN+ KLQ+E LTDAVSL+AF+ G++DEHLSFSFGK+T STFSE                                   +PQG     R            
Subjt:  FNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR------------

Query:  --------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSKSPTREIRTILG
                P +  L++                                                       +EYV +PKAT + + D KSP REIRTI+G
Subjt:  --------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSKSPTREIRTILG

Query:  GPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK
        GP+ERESGRKRK                          I+FSEDE THL HPHN+AL+I LKIAN +
Subjt:  GPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK

A0A6J1D911 uncharacterized protein LOC1110183651.1e-2539.34Show/hide
Query:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL--------------------------RPQGRNGGSRP--------
        T  SL +YVARFNE KLQ+E LTD VSL+AFMSG++DEHLSFSF KKT STFSE                           + + R+G   P        
Subjt:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL--------------------------RPQGRNGGSRP--------

Query:  --------------------------------YD-----TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS---------
                                        +D      GL++    +EYV D KAT + + D KSP REIRTI+GG +ERESGRK K           
Subjt:  --------------------------------YD-----TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS---------

Query:  --------------KIKFSEDEVTHLFHPHNNALIIALKIANAK
                       I+FSEDE TH  HPHN+AL+IALKIAN K
Subjt:  --------------KIKFSEDEVTHLFHPHNNALIIALKIANAK

A0A6J1DWY0 uncharacterized protein LOC1110252937.6e-4835.94Show/hide
Query:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------
        ++  D   +P  I ++K +P DRPE SEK  S KEKGFDLEEL+DQADSPF EEIM EK+PPKFKLP +KQFD +T+ +DHL                  
Subjt:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------

Query:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF
           + T NG    W                                          T+ SL+DYVARFNE KLQ+E LTDAVSL+AFMSG++DEHLSFSF
Subjt:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF

Query:  GKKTSSTFSEL----------------------------------RPQG---------------------------------------------------
        GK+T +TFSE                                   +PQG                                                   
Subjt:  GKKTSSTFSEL----------------------------------RPQG---------------------------------------------------

Query:  ------------RNGGSRPYD--------TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS-------------------
                    R+ G    D         GL++    +EYV +PKAT + + D KSP REIRTI+GGP+ERESGRKRK                     
Subjt:  ------------RNGGSRPYD--------TGLLQP---QEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVS-------------------

Query:  ----KIKFSEDEVTHLFHPHNNALIIALKIANAK
             I+FSEDE THL HPHN+AL+I LKIAN K
Subjt:  ----KIKFSEDEVTHLFHPHNNALIIALKIANAK

A0A6J1DYL6 uncharacterized protein LOC1110257856.2e-2635.61Show/hide
Query:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR-
        T+ SL DYVARFN+ KLQIE LTD VSL+AFMSG++DEHLSFSFGKKT STFSE                                   +PQG     R 
Subjt:  TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSEL----------------------------------RPQGRNGGSR-

Query:  -------------------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSK
                           P +  L++                                                       QEYV +PKAT + + + K
Subjt:  -------------------PYDTGLLQ------------------------------------------------------PQEYVGDPKATLSDKCDSK

Query:  SPTREIRTILGGPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK
        SP REIRTI+GGP+ERES RKRK                          I+FSEDE THL HPHN+AL+I LKIAN K
Subjt:  SPTREIRTILGGPMERESGRKRKVS-----------------------KIKFSEDEVTHLFHPHNNALIIALKIANAK

A0A6J1E1E7 uncharacterized protein LOC1110255483.1e-3345.71Show/hide
Query:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------
        N+  +   +P  I +NK +P DRPE SEK  ++KEKGFDLEEL+ QADSPF EEIM EK+PPKFKLP +K FDG T  +DHL                  
Subjt:  NERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHL------------------

Query:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF
           + T NG    W                                          T+ SL DYVARFNE KLQ+E LTDAVSL+AFMSG++DEHLSFSF
Subjt:  ---TPTENG----W------------------------------------------TSTSLKDYVARFNEAKLQIEVLTDAVSLIAFMSGIKDEHLSFSF

Query:  GKKTSSTFSE
         K+T STFSE
Subjt:  GKKTSSTFSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGTAATGAACGCCAAGATGCCCAAGGAGACCCCGGACTTATTGACATCAACAAGGAAAGGCCGTGGGATCGACCGGAGCCATCAGAGAAGCTGTTAAGCAAGAA
GGAGAAGGGATTTGACCTCGAAGAATTGATAGACCAGGCTGACTCTCCGTTTAGGGAGGAAATAATGGGAGAAAAGCTCCCTCCAAAATTTAAGCTCCCGGTCATAAAGC
AATTCGACGGGTCGACCAACCTGATAGATCACTTGACACCTACCGAGAATGGATGGACATCTACGAGCCTCAAAGACTACGTGGCTCGGTTTAATGAGGCAAAGCTACAA
ATCGAAGTACTAACTGACGCAGTGTCGCTGATAGCCTTCATGTCTGGCATAAAAGATGAGCACCTGTCGTTCTCATTTGGAAAGAAAACTTCGAGCACCTTTTCAGAACT
TCGACCTCAGGGAAGAAATGGAGGATCACGACCATACGACACAGGATTGCTTCAACCTCAAGAGTATGTAGGTGATCCCAAGGCGACTCTGAGCGACAAATGCGACAGCA
AATCCCCTACCAGGGAGATACGAACAATACTGGGAGGTCCAATGGAGAGAGAGTCTGGCAGGAAGAGAAAGGTCTCCAAGATCAAGTTCTCAGAGGATGAGGTAACCCAC
CTATTCCACCCACACAATAACGCGCTGATCATTGCTCTTAAAATAGCCAACGCAAAGAATGCTGAAGAGCAGCTCGGCCCCGCTGGTAGGGTTCGAAGATTCCAAAACAG
AATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGTAATGAACGCCAAGATGCCCAAGGAGACCCCGGACTTATTGACATCAACAAGGAAAGGCCGTGGGATCGACCGGAGCCATCAGAGAAGCTGTTAAGCAAGAA
GGAGAAGGGATTTGACCTCGAAGAATTGATAGACCAGGCTGACTCTCCGTTTAGGGAGGAAATAATGGGAGAAAAGCTCCCTCCAAAATTTAAGCTCCCGGTCATAAAGC
AATTCGACGGGTCGACCAACCTGATAGATCACTTGACACCTACCGAGAATGGATGGACATCTACGAGCCTCAAAGACTACGTGGCTCGGTTTAATGAGGCAAAGCTACAA
ATCGAAGTACTAACTGACGCAGTGTCGCTGATAGCCTTCATGTCTGGCATAAAAGATGAGCACCTGTCGTTCTCATTTGGAAAGAAAACTTCGAGCACCTTTTCAGAACT
TCGACCTCAGGGAAGAAATGGAGGATCACGACCATACGACACAGGATTGCTTCAACCTCAAGAGTATGTAGGTGATCCCAAGGCGACTCTGAGCGACAAATGCGACAGCA
AATCCCCTACCAGGGAGATACGAACAATACTGGGAGGTCCAATGGAGAGAGAGTCTGGCAGGAAGAGAAAGGTCTCCAAGATCAAGTTCTCAGAGGATGAGGTAACCCAC
CTATTCCACCCACACAATAACGCGCTGATCATTGCTCTTAAAATAGCCAACGCAAAGAATGCTGAAGAGCAGCTCGGCCCCGCTGGTAGGGTTCGAAGATTCCAAAACAG
AATATAG
Protein sequenceShow/hide protein sequence
MEGNERQDAQGDPGLIDINKERPWDRPEPSEKLLSKKEKGFDLEELIDQADSPFREEIMGEKLPPKFKLPVIKQFDGSTNLIDHLTPTENGWTSTSLKDYVARFNEAKLQ
IEVLTDAVSLIAFMSGIKDEHLSFSFGKKTSSTFSELRPQGRNGGSRPYDTGLLQPQEYVGDPKATLSDKCDSKSPTREIRTILGGPMERESGRKRKVSKIKFSEDEVTH
LFHPHNNALIIALKIANAKNAEEQLGPAGRVRRFQNRI