; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g28860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g28860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein PAF1 homolog
Genome locationchr9:21642311..21642937
RNA-Seq ExpressionMoc09g28860
SyntenyMoc09g28860
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]1.6e-9891.28Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP
        PSQAPTQ P+M PHGYVNFQQLPT NI Q+SEFRAENPQQLPPMINPGMYQPFMFN VPSYHF LSQMQIPASVHPYGMPN STLFPSL PYYGMGHWVP
Subjt:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        P NYGMISPRVPPPPQL FLERGPQAPQLNPNILSTFNMG LKPLEPPRMP PTNMPMD GDEHGGEQEKSHSHRLEPGV IGQKRKGKEVM DP
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

XP_022156936.1 uncharacterized protein LOC111023763 [Momordica charantia]5.2e-9491.35Show/hide
Query:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQQLPTLNI QNSEFRAENPQQLPPMINPGMYQPFMFN VPSYHF LSQMQI ASVHPYGMPN STLFPS PPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQ PQLNPN LSTFNMGHLKPLEPPRMPIPTNMPMD G EHGGEQEKSH  RLEP +SIGQKRKGKEVMTDP
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

XP_022157800.1 protein PAF1 homolog [Momordica charantia]1.5e-9689.23Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP
        PSQAPTQ PMM PHGYVNFQQLP LNI QNSEFRAE+PQQ PPMINPGMYQPF+FNPVP YHF LSQMQIPASVHPYGMPN STLFPSLPPYY MG+WVP
Subjt:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMG LKPLEPP MPIP N+PMDTG EHGGEQEKSH+ RLEP VSIGQKRKGKEV+TDP
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

XP_022158357.1 uncharacterized protein LOC111024860 [Momordica charantia]2.8e-10377.29Show/hide
Query:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPM
        MASSSQHTSLPTS                                           PSQAPTQ P+M PHGYVNFQQLPTLNI QNSEFRAENPQQLPPM
Subjt:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPM

Query:  INPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKP
        INPGMYQPFMFNPVPSYHF LSQMQIPASVHPYGMPN STLFPSLPPYYGMGHW+PPQNYGMISP+VPPPPQLPFLERGPQAPQL+PNILST+NMG LKP
Subjt:  INPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKP

Query:  LEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        LEPPRMP PTNMPMD GDEHGGEQEK HSHRLEPGVSIGQKRKGKEVMTDP
Subjt:  LEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

XP_022158852.1 uncharacterized protein LOC111025316 [Momordica charantia]3.0e-9794.05Show/hide
Query:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQ LPTLNI QNSEFRAE+PQQLPPMINPGMYQPFMFNPVPSYHF LSQMQIPASVHPYGMPN STLFPSLPPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEP RM IPTNMPMDTGDEHGGEQEKSHS RLEPGVSIGQKRKGKEVM+DP
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

TrEMBL top hitse value%identityAlignment
A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201107.6e-9991.28Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP
        PSQAPTQ P+M PHGYVNFQQLPT NI Q+SEFRAENPQQLPPMINPGMYQPFMFN VPSYHF LSQMQIPASVHPYGMPN STLFPSL PYYGMGHWVP
Subjt:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        P NYGMISPRVPPPPQL FLERGPQAPQLNPNILSTFNMG LKPLEPPRMP PTNMPMD GDEHGGEQEKSHSHRLEPGV IGQKRKGKEVM DP
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

A0A6J1DU32 protein PAF1 homolog7.1e-9789.23Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP
        PSQAPTQ PMM PHGYVNFQQLP LNI QNSEFRAE+PQQ PPMINPGMYQPF+FNPVP YHF LSQMQIPASVHPYGMPN STLFPSLPPYY MG+WVP
Subjt:  PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMG LKPLEPP MPIP N+PMDTG EHGGEQEKSH+ RLEP VSIGQKRKGKEV+TDP
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

A0A6J1DWG3 uncharacterized protein LOC1110237632.5e-9491.35Show/hide
Query:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQQLPTLNI QNSEFRAENPQQLPPMINPGMYQPFMFN VPSYHF LSQMQI ASVHPYGMPN STLFPS PPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQ PQLNPN LSTFNMGHLKPLEPPRMPIPTNMPMD G EHGGEQEKSH  RLEP +SIGQKRKGKEVMTDP
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

A0A6J1DX11 uncharacterized protein LOC1110248601.3e-10377.29Show/hide
Query:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPM
        MASSSQHTSLPTS                                           PSQAPTQ P+M PHGYVNFQQLPTLNI QNSEFRAENPQQLPPM
Subjt:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPM

Query:  INPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKP
        INPGMYQPFMFNPVPSYHF LSQMQIPASVHPYGMPN STLFPSLPPYYGMGHW+PPQNYGMISP+VPPPPQLPFLERGPQAPQL+PNILST+NMG LKP
Subjt:  INPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKP

Query:  LEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        LEPPRMP PTNMPMD GDEHGGEQEK HSHRLEPGVSIGQKRKGKEVMTDP
Subjt:  LEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

A0A6J1DY94 uncharacterized protein LOC1110253161.4e-9794.05Show/hide
Query:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQ LPTLNI QNSEFRAE+PQQLPPMINPGMYQPFMFNPVPSYHF LSQMQIPASVHPYGMPN STLFPSLPPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEP RM IPTNMPMDTGDEHGGEQEKSHS RLEPGVSIGQKRKGKEVM+DP
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTCTTCTCAACACACTTCACTCCCTACTTCTCCTTCCCAAGCTCCTACACAACCTCCTATGATGGGACCACATGGTTATGTAAATTTTCAGCAACTA
CCCACCCTTAATATACGTCAAAACAGTGAGTTTAGGGCTGAAAATCCTCAACAACTTCCTCCAATGATCAATCCGGGTATGTACCAACCATTTATGTTTAACCCG
GTTCCTTCCTATCATTTTCGCTTGTCCCAAATGCAAATTCCAGCTAGTGTTCATCCTTACGGAATGCCCAACTCATCTACTCTATTTCCTAGCCTTCCACCTTAT
TATGGAATGGGTCATTGGGTACCTCCACAAAATTATGGGATGATTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGCACCA
CAATTGAACCCTAACATATTGAGTACCTTCAACATGGGACACCTAAAACCCTTAGAGCCTCCTAGGATGCCAATCCCAACCAATATGCCAATGGATACAGGAGAT
GAGCATGGAGGAGAGCAAGAGAAGAGCCATAGCCATAGGCTAGAGCCCGGGGTCTCGATAGGACAAAAGAGGAAGGGCAAGGAGGTGATGACGGACCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTCTTCTCAACACACTTCACTCCCTACTTCTCCTTCCCAAGCTCCTACACAACCTCCTATGATGGGACCACATGGTTATGTAAATTTTCAGCAACTA
CCCACCCTTAATATACGTCAAAACAGTGAGTTTAGGGCTGAAAATCCTCAACAACTTCCTCCAATGATCAATCCGGGTATGTACCAACCATTTATGTTTAACCCG
GTTCCTTCCTATCATTTTCGCTTGTCCCAAATGCAAATTCCAGCTAGTGTTCATCCTTACGGAATGCCCAACTCATCTACTCTATTTCCTAGCCTTCCACCTTAT
TATGGAATGGGTCATTGGGTACCTCCACAAAATTATGGGATGATTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGCACCA
CAATTGAACCCTAACATATTGAGTACCTTCAACATGGGACACCTAAAACCCTTAGAGCCTCCTAGGATGCCAATCCCAACCAATATGCCAATGGATACAGGAGAT
GAGCATGGAGGAGAGCAAGAGAAGAGCCATAGCCATAGGCTAGAGCCCGGGGTCTCGATAGGACAAAAGAGGAAGGGCAAGGAGGTGATGACGGACCCATAA
Protein sequenceShow/hide protein sequence
MASSSQHTSLPTSPSQAPTQPPMMGPHGYVNFQQLPTLNIRQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFRLSQMQIPASVHPYGMPNSSTLFPSLPPY
YGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGHLKPLEPPRMPIPTNMPMDTGDEHGGEQEKSHSHRLEPGVSIGQKRKGKEVMTDP